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Giordani S, Marassi V, Placci A, Zattoni A, Roda B, Reschiglian P. Field-Flow Fractionation in Molecular Biology and Biotechnology. Molecules 2023; 28:6201. [PMID: 37687030 PMCID: PMC10488451 DOI: 10.3390/molecules28176201] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Revised: 08/08/2023] [Accepted: 08/15/2023] [Indexed: 09/10/2023] Open
Abstract
Field-flow fractionation (FFF) is a family of single-phase separative techniques exploited to gently separate and characterize nano- and microsystems in suspension. These techniques cover an extremely wide dynamic range and are able to separate analytes in an interval between a few nm to 100 µm size-wise (over 15 orders of magnitude mass-wise). They are flexible in terms of mobile phase and can separate the analytes in native conditions, preserving their original structures/properties as much as possible. Molecular biology is the branch of biology that studies the molecular basis of biological activity, while biotechnology deals with the technological applications of biology. The areas where biotechnologies are required include industrial, agri-food, environmental, and pharmaceutical. Many species of biological interest belong to the operational range of FFF techniques, and their application to the analysis of such samples has steadily grown in the last 30 years. This work aims to summarize the main features, milestones, and results provided by the application of FFF in the field of molecular biology and biotechnology, with a focus on the years from 2000 to 2022. After a theoretical background overview of FFF and its methodologies, the results are reported based on the nature of the samples analyzed.
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Affiliation(s)
- Stefano Giordani
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
| | - Valentina Marassi
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
- byFlow srl, 40129 Bologna, Italy
| | - Anna Placci
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
| | - Andrea Zattoni
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
- byFlow srl, 40129 Bologna, Italy
| | - Barbara Roda
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
- byFlow srl, 40129 Bologna, Italy
| | - Pierluigi Reschiglian
- Department of Chemistry “Giacomo Ciamician”, University of Bologna, 40126 Bologna, Italy (V.M.)
- byFlow srl, 40129 Bologna, Italy
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Guo S, Qiu BL, Zhu CQ, Yang YYG, Wu D, Liang QH, Han NY. Effects of comprehensive function of factors on retention behavior of microparticles in gravitational field-flow fractionation. J Chromatogr B Analyt Technol Biomed Life Sci 2016; 1031:1-7. [DOI: 10.1016/j.jchromb.2016.07.009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2016] [Revised: 06/29/2016] [Accepted: 07/04/2016] [Indexed: 10/21/2022]
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3
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Retention behavior of microparticles in gravitational field-flow fractionation (GrFFF): Effect of ionic strength. Talanta 2015; 132:945-53. [DOI: 10.1016/j.talanta.2014.05.061] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2014] [Revised: 05/28/2014] [Accepted: 05/29/2014] [Indexed: 11/19/2022]
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4
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Liekens A, Billen J, Sherant R, Ritchie H, Denayer J, Desmet G. High performance liquid chromatography column packings with deliberately broadened particle size distribution: Relation between column performance and packing structure. J Chromatogr A 2011; 1218:6654-62. [DOI: 10.1016/j.chroma.2011.07.055] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2011] [Revised: 07/14/2011] [Accepted: 07/17/2011] [Indexed: 11/29/2022]
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Lee S, Kang DY, Park M, Williams PS. Effect of Carrier Fluid Viscosity on Retention Time and Resolution in Gravitational Field-Flow Fractionation. Anal Chem 2011; 83:3343-51. [DOI: 10.1021/ac103002g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Seungho Lee
- Department of Chemistry, Hannam University, Daejeon 305-811, South Korea
| | - Da Young Kang
- Department of Chemistry, Hannam University, Daejeon 305-811, South Korea
| | - Miri Park
- Department of Chemistry, Hannam University, Daejeon 305-811, South Korea
| | - P. Stephen Williams
- Department of Biomedical Engineering, Lerner Research Institute, Cleveland Clinic, 9500 Euclid Avenue, Cleveland, Ohio 44195, United States
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Study of the influence of surfactants on the size distribution and mass ratio of wheat starch granules by sedimentation/steric field-flow fractionation. Food Hydrocoll 2008. [DOI: 10.1016/j.foodhyd.2007.05.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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7
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Particle packed columns and monolithic columns in high-performance liquid chromatography-comparison and critical appraisal. J Chromatogr A 2008; 1184:393-415. [DOI: 10.1016/j.chroma.2007.11.118] [Citation(s) in RCA: 271] [Impact Index Per Article: 16.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2007] [Revised: 11/28/2007] [Accepted: 11/30/2007] [Indexed: 11/29/2022]
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Melucci† D, Gianni G, Torsi G, Zattoni A, Reschiglian P. Experimental Analysis of Second-Order Effects on Gravitational Field-Flow Fractionation Retention of Silica Particles. J LIQ CHROMATOGR R T 2006. [DOI: 10.1080/10826079708005583] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- D. Melucci†
- a Department of Chemistry “G. Ciamician” , University of Bologna Via Selmi 2 , Bologna, Italy , I-40126
| | - G. Gianni
- a Department of Chemistry “G. Ciamician” , University of Bologna Via Selmi 2 , Bologna, Italy , I-40126
| | - G. Torsi
- a Department of Chemistry “G. Ciamician” , University of Bologna Via Selmi 2 , Bologna, Italy , I-40126
| | - A. Zattoni
- a Department of Chemistry “G. Ciamician” , University of Bologna Via Selmi 2 , Bologna, Italy , I-40126
| | - P. Reschiglian
- a Department of Chemistry “G. Ciamician” , University of Bologna Via Selmi 2 , Bologna, Italy , I-40126
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Assidjo E, P Cardot PJ. Sedimentation Field-Flow Fractionation at Gravitational Field of Red Blood Cells: Systematic Studies of Injection Conditions. J LIQ CHROMATOGR R T 2006. [DOI: 10.1080/10826079708005581] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- Emmanuel Assidjo
- a Laboratoire de Chimie Analytique et de Bromatologie , Université de Limoges Faculté de Pharmacie 2 rue du Dr Marcland , F-87025, Limoges Cedex, France
| | - Philippe J. P Cardot
- a Laboratoire de Chimie Analytique et de Bromatologie , Université de Limoges Faculté de Pharmacie 2 rue du Dr Marcland , F-87025, Limoges Cedex, France
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Koliadima A. THE KINETIC STUDY OF AGGREGATION OF THE SULPHIDE Cu0.2Zn0.8S PARTICLES BY GRAVITATIONAL FIELD-FLOW FRACTIONATION. J LIQ CHROMATOGR R T 2006. [DOI: 10.1081/jlc-100101810] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- A. Koliadima
- a Department of Chemistry , University of Patras , Patras , GR-26500 , Greece
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Farmakis L, Koliadima A, Karaiskakis G. STUDY OF THE INFLUENCE OF IONIC STRENGTH AND pH OF THE SUSPENDING MEDIUM ON THE SIZE OF WHEAT STARCH GRANULES, MEASURED BY SEDIMENTATION/STERIC FIELD-FLOW FRACTIONATION. J LIQ CHROMATOGR R T 2006. [DOI: 10.1081/jlc-100108738] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Lambros Farmakis
- a Department of Chemistry , University of Patras , Patras, 26500, Greece
| | | | - George Karaiskakis
- b Department of Chemistry , University of Patras , Patras, 26500, Greece
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Chen Z, Chauhan A. DNA separation by EFFF in a microchannel. J Colloid Interface Sci 2005; 285:834-44. [PMID: 15837503 DOI: 10.1016/j.jcis.2004.11.061] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2004] [Accepted: 11/29/2004] [Indexed: 11/21/2022]
Abstract
This paper theoretically explores the application of electric field flow fractionation (EFFF) for the size-based separation of DNA strands in a microchannel. An axial electric field cannot separate DNA strands in solution because the electrical mobility of the strands is independent of the length. However, lateral electric fields coupled with an axial Poiseuille flow can separate the DNA strands of different sizes. By using regular perturbation analysis, we obtain the effective diffusivity and the mean velocity of the DNA molecules that are undergoing a pressure driven Poiseuille flow in a 2D channel in presence of a lateral electric field. The mean velocities and the dispersion coefficients are then utilized to determine the scaling for length of the channel and the time required for separation of DNA molecules in different parameter regimes. The results show that EFFF can separate DNA strands in the range of 10 kbp that differ in size by about 2.5 kbp in about half an hour in a 1 cm long channel. While DNA strands can be separated by EFFF, the performance of devices based on EFFF seems to be at best comparable to other techniques such as entropic trapping.
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Affiliation(s)
- Zhi Chen
- Department of Chemical Engineering, University of Florida, Gainesville, FL 32611, USA
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Sanz R, Puigno L, Reschiglian P, Galceran MT. Gravitational field-flow fractionation for the characterisation of active dry wine yeast. J Chromatogr A 2001; 919:339-47. [PMID: 11442040 DOI: 10.1016/s0021-9673(01)00807-x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Gravitational field-flow fractionation (GrFFF) is applied to the fractionation of active dry wine yeast. An experimental approach to the analysis of the effects that field variation by changing mobile phase composition and flow-rate have on the fractionation process of standard particles (polystyrene) was first developed to further obtain effective fractionation of wine yeast by GrFFF. Scanning electron microscopy and Coulter counter particle size measurements were used to monitor the fractionation extent and capabilities of GrFFF to describe the distribution of yeast cells populations.
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Affiliation(s)
- R Sanz
- Department de Química Analítica, Universitat de Barcelona, Spain
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Reschiglian P, Melucci D, Zattoni A, Malló L, Hansen M, Kummerow A, Miller M. Working without accumulation membrane in flow field-flow fractionation. Anal Chem 2000; 72:5945-54. [PMID: 11140761 DOI: 10.1021/ac000608q] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Nonideal interaction of sample with the separation device is a difficulty found in chromatographic methods as well as in field-flow fractionation. However, in field-flow fractionation (FFF), greater flexibility in the choice of carrier solution composition is possible, thus reducing the need of a wide choice of surface chemistry when nonideal sample interaction is to be minimized. The use of an ultrafiltration membrane as the surface for the accumulation wall is common practice in flow field-flow fractionation. Typical membranes in use are laminates of a skin membrane onto a backing material such as woven polyester. At this point, only a limited choice of membrane chemistries is available. Many membranes have been developed for protein applications as membranes are widely used in the pharmaceutical industries. While these membranes work well for protein applications, flow field-flow fractionation is applicable to polymeric particulate as well as protein samples. Thus, sample interaction with the membrane surface is possible with nonprotein applications and these interactions can induce significant secondary effects on retention ratio and affect instrumental reliability. Also, the woven texture of membranes may detrimentally affect the FFF separation. For these reasons, the study of flow field-flow fractionation using a flat, smooth surface of controlled chemistry is of relevance. We present here the results of a new, membraneless channel that uses a bare frit as the accumulation wall and that is intended for analysis of micrometer-sized particles only. Selectivity results are comparable to those obtained with the membrane, while relative sample recovery indicates that the best quantitative performance can be obtained without the membrane. Moreover, neither sample immobilization nor losses through the frit occur when operating membraneless. On the other hand, first experimental evidence of a certain level of frit surface activity suggests that optimization of experimental conditions is required.
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Affiliation(s)
- P Reschiglian
- Department of Chemistry G. Ciamician, Bologna, Italy.
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Contado C, Reschiglian P, Faccini S, Zattoni A, Dondi F. Continuous split-flow thin cell and gravitational field-flow fractionation of wheat starch particles. J Chromatogr A 2000; 871:449-60. [PMID: 10735325 DOI: 10.1016/s0021-9673(99)01191-7] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The combined employment of the SPLITT (split-flow thin) cell--a relatively new system for fast, continuous binary separation--and of gravitational field-flow fractionation (GrFFF)--a fractionation technique suitable for micron particle size distribution determination--was investigated for starch separation and characterization. Emphasis is placed on the main advantages of both techniques: operating under gentle earth gravity field, low cost and ease of maintenance. The reproducibility of GrFFF is demonstrated. Both the SPLITT separation and GrFFF fractionation results were checked by optical microscopy. Application examples of typical starch fractionation experiments are reported and discussed.
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Affiliation(s)
- C Contado
- Department of Chemistry, University of Ferrara, Italy.
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Cölfen H, Antonietti M. Field-Flow Fractionation Techniques for Polymer and Colloid Analysis. NEW DEVELOPMENTS IN POLYMER ANALYTICS I 2000. [DOI: 10.1007/3-540-48764-6_2] [Citation(s) in RCA: 69] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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17
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Standardless method for quantitative particle-size distribution studies by gravitational field-flow fractionation. Application to silica particles. Chromatographia 2000. [DOI: 10.1007/bf02490701] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Reschiglian P, Melucci D, Torsi G. A quantitative approach to the analysis of supermicron dispersions by field-flow fractionation with UV-vis detectors. The application of an absolute method. Chromatographia 1997. [DOI: 10.1007/bf02466452] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Reschiglian P, MeLucci D, Zattoni A, Torsi G. Quantitative approach to field-flow fractionation for the characterization of supermicron particles. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/(sici)1520-667x(1997)9:7<545::aid-mcs4>3.0.co;2-1] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Pazourek J, Chmelík J. Characterization of chromatographic silica gel support particles by gravitational field-flow fractionation. ACTA ACUST UNITED AC 1997. [DOI: 10.1002/(sici)1520-667x(1997)9:8<611::aid-mcs4>3.0.co;2-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Reschiglian P, Melucci D, Torsi G. Experimental study on the retention of silica particles in gravitational field-flow fractionation effects of the mobile phase composition. J Chromatogr A 1996. [DOI: 10.1016/0021-9673(96)00117-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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