Immunology of the pathogen virulence and phytotoxin production in relation to disease severity: a case study in sheath blight of rice

Identification of a new phytotoxic compound from culture filtrates of an aggressive Rhizoctonia solani AG 1A isolate inducing sheath blight of rice

Phytotoxins produced by Rhizoctonia solani AG1-1A (Anastomosis Group 1 Subgroup 1A) play a significant role in developing sheath blight disease in rice. A phytotoxin in the partially purified ethyl acetate fraction from the culture filtrate of a highly aggressive R. solani (RIRS-K) isolate, with Indian Type Culture Collection (ITCC) number 7479, infecting rice that could incite necrotic symptoms characteristic of the fungus was identified. The role of the crude toxin in the pathogenicity and virulence of the fungal pathogen on rice was first established by artificial inoculation assay under controlled conditions. The crude ethyl acetate extract obtained from the culture filtrate of RIRS-K was first fractionated by column chromatography. Further purification of the bioactive fraction was carried out by using bioassay-guided fractionation, and a toxic fraction was obtained. The most bioactive fraction was analyzed by GC-MS analysis, and 3-butylpyridine (3-BP) was identified as a major compound in the active fraction by comparing its mass spectrum with NIST library and its standard. The purified bioactive fraction and standard (3-BP) toxicity was further validated and compared at 1000 ppm. The result showed that both the bioactive fraction and the 3-BP have caused necrosis, similar to the one incited by R. solani. This study showed that 3-BP is one of the major compounds responsible for the necrosis development in the rice plant during ShB disease and is a hitherto unexplored toxin of R. solani in rice.

Metabolomic analysis of sheath blight disease of rice (Oryza sativa L.) induced by Rhizoctonia solani phytotoxin

AIM

To understand the mechanism of necrosis incited by a host-selective phytotoxin designated as Rhizoctonia solani toxin (RST) identified to be a potential pathogenic factor of Rhizoctonia solani AG1 IA, causing sheath blight (ShB) of rice.

METHODS AND RESULTS

The metabolomic changes induced by the phytotoxic metabolite in a ShB susceptible rice cultivar were elucidated by Gas Chromatography-Mass Spectrometry (GC-MS) analysis and compared with that of the pathogen to identify rice metabolites targeted by the phytotoxin. The profiles of about 29 metabolites with various physiological roles in rice plants have been identified worldwide. Unsupervised and supervised multivariate chemometrics (Principal Component Analysis, PCA and Partial Least Squares-Discriminant Analysis, PLS-DA) and cluster (Heat maps) analyses were used to compare the metabolites obtained from chemical profiles of the treatments with sterile distilled water (SDW) control. The results indicated that the rice plant expressed more metabolites in response to the pathogen than the phytotoxin and was lowest in SDW control. The key metabolites expressed in rice in response to the treatments were investigated by the Variable Importance in Projection (VIP) analysis using P< 0.05 VIP >15. The analysis identified 7 and 11 upregulating metabolites in the phytotoxin and the pathogen treatments, respectively, compared to the untreated control. Among the phytotoxin-treated and the pathogen inoculated samples, the phytotoxin treated sample recorded upregulation of 6 metabolites, whereas 9 metabolites were upregulated in the pathogen inoculated samples. These upregulating metabolites are speculated for the necrotic symptoms characteristic to both the phytotoxin and pathogen. In this analysis, hexadecanoic acid and dotriacontane were highly expressed metabolites specific to the phytotoxin and pathogen-treated samples, respectively. Besides upregulation, the metabolites also have a VIP score of >1.5 and hence fulfilled the criteria of classifying them as reliable potential biomarkers. In the pathway analysis, hexadecanoic acid and dotriacontane were identified to be involved in several important biosynthetic pathways of rice, such as the biosynthesis of saturated fatty acid and unsaturated fatty acids cutin, suberin, and wax.

CONCLUSIONS

The study concludes that though certain metabolites induced by the phytotoxin in the susceptible variety during necrosis shares with that of the pathogen, the identification of metabolites specific to the phytotoxin in comparison to the pathogenic and SDW controls indicated that the phytotoxin modulates the host metabolism differently and hence can be a potential pathogenicity factor of the ShB fungus.

SIGNIFICANCE AND IMPACT OF THE STUDY

Due to lack of knowledge on the pathway genes of RST and in the absence of an ShB resistant variety, understanding differentially expressed metabolic changes induced in the susceptible variety by the phytotoxin in comparison to that of the pathogenic and uninoculated controls enables us to identify the key metabolite changes during the ShB infection. Such metabolomic changes can further be used to infer gene functions for exploitation in ShB control.

Molecular biology of Ganoderma pathogenicity and diagnosis in coconut seedlings

The pathogenicity of Ganoderma boninense was tested on coconut seedlings under greenhouse conditions and infection confirmed by using immunological and molecular diagnostic tools. Desiccation of older leaves and the emergence of sporophores were observed from pathogen-inoculated seedlings, whereas a control seedling does not show any pathogenic symptoms. Mature sporophores were formed within 10-13 weeks after inoculation. Polyclonal antibodies raised against mycelial proteins of Ganoderma were used for detection of Ganoderma in infected field palm and seedlings through indirect enzyme-linked immunosorbent assay technique. We adopted dot-immunobinding assay for the detection of Ganoderma from greenhouse and field samples. Under nucleic-acid-based diagnosis, G. boninense (167 bp) was detected from artificially inoculated seedlings and infected field palms by polymerase chain reaction. Apart from these, histopathological studies also support the Ganoderma pathogenicity in coconut seedlings. The pathogenicity test and combination of all the three diagnostic methods for Ganoderma could be highly reliable, rapid, sensitive and effective screening of resistance in planting material in the future.

Characterization of antimicrobial peptides against a US strain of the rice pathogen Rhizoctonia solani

AIM

To identify antimicrobial peptides with high lytic activity against Rhizoctonia solani strain LR172, causal agent of rice sheath blight and aerial blight of soyabeans in the US.

METHODS AND RESULTS

Among 12 natural and synthetic antimicrobial peptides tested in vitro, the wheat-seed peptide, purothionin, showed the strongest inhibitory activity that was similar to the antifungal antibiotics, nystatin and nikkomycin Z. Cecropin B, a natural peptide from cecropia moth, and synthetic peptide D4E1 produced the highest inhibitory activity against R. solani among linear peptides. Membrane permeabilization levels strongly correlated with antifungal activity of the peptides. Noticeable changes in membrane integrity were observed at concentrations of >/=0.5 micromol l(-1) for purothionin, 2 micromol l(-1) for cecropin B, D4E1, D2A21, melittin, and phor21, and 8 micromol l(-1) for magainin II and phor14. An increase of nuclear membrane permeabilization was observed in fungal cells treated with cecropin B, but not with purothionin. Diffusion of nuclear content was observed by fluorescent microscopy 10 min after adding a lethal concentration of cecropin B. Evaluation by electron microscopy confirmed severe cytoplasmic degradation and plasma membrane vesiculation. Purothionin and cecropin B were the most stable against proteolytic degradation when added to liquid cultures of R. solani.

CONCLUSIONS

Purothionin, cecropin B, D4E1 and phor21 were shown to exhibit high in vitro lytic activity against R. solani strain LR172 for rice and soyabean. These peptides are greater than 16 amino acids long and rapidly increase fungal membrane permeabilization. Resistance to proteolysis is important for sufficient antifungal activity of antimicrobial peptides.

SIGNIFICANCE AND IMPACT OF THE STUDY

Selected antimicrobial peptides offer an attractive alternative to traditional chemicals that could be utilized in molecular breeding to develop crops resistant to rice sheath blight and aerial blight of soyabean.