Secondary metabolism as an expression of microbial growth and development

Hierarchical amino acid utilization and its influence on fermentation dynamics: rifamycin B fermentation using Amycolatopsis mediterranei S699, a case study

Background

Industrial fermentation typically uses complex nitrogen substrates which consist of mixture of amino acids. The uptake of amino acids is known to be mediated by several amino acid transporters with certain preferences. However, models to predict this preferential uptake are not available. We present the stoichiometry for the utilization of amino acids as a sole carbon and nitrogen substrate or along with glucose as an additional carbon source. In the former case, the excess nitrogen provided by the amino acids is excreted by the organism in the form of ammonia. We have developed a cybernetic model to predict the sequence and kinetics of uptake of amino acids. The model is based on the assumption that the growth on a specific substrate is dependent on key enzyme(s) responsible for the uptake and assimilation of the substrates. These enzymes may be regulated by mechanisms of nitrogen catabolite repression. The model hypothesizes that the organism is an optimal strategist and invests resources for the uptake of a substrate that are proportional to the returns.

Results

Stoichiometric coefficients and kinetic parameters of the model were estimated experimentally for Amycolatopsis mediterranei S699, a rifamycin B overproducer. The model was then used to predict the uptake kinetics in a medium containing cas amino acids. In contrast to the other amino acids, the uptake of proline was not affected by the carbon or nitrogen catabolite repression in this strain. The model accurately predicted simultaneous uptake of amino acids at low cas concentrations and sequential uptake at high cas concentrations. The simulated profile of the key enzymes implies the presence of specific transporters for small groups of amino acids.

Conclusion

The work demonstrates utility of the cybernetic model in predicting the sequence and kinetics of amino acid uptake in a case study involving Amycolatopsis mediterranei, an industrially important organism. This work also throws some light on amino acid transporters and their regulation in A. mediterranei .Further, cybernetic model based experimental strategy unravels formation and utilization of ammonia as well as its inhibitory role during amino acid uptake. Our results have implications for model based optimization and monitoring of other industrial fermentation processes involving complex nitrogen substrate.

Physiology of a wild strain and high yielding mutants of Streptomyces rimosus, producing oxytetracycline

A wild-type Streptomyces strain, yielding 1 g/L of oxytetracycline was compared with mutants giving up to 7 g/L, using complex media in stirred and shaken culture. Increased production of oxytetracycline was associated with high specific production rates and a longer production period. The superiority of the mutants was associated with changes in morphological behaviour during growth in submerged culture, and in their patterns of growth and respiration, coupled with increased resistance to the product. The productivity of the mutants was sensitive to the rate of stirring, the type of calcium carbonate used in the medium and the type of inoculum. Careful control of these factors was necessary to obtain high yields of oxytetracycline. With the exception of acetyl-CoA carboxylase, the levels of enzymes measured and of amounts of adenylates in the mycelium did not appear to be related to the degree of antibiotic production.

Changes in the lipid composition of Paecilomyces persicinus P-10 M1 during growth and cephalosporin C production

The lipid composition of the fungus Paecilomyces persicinus P-10 M1 was monitored daily for 6 days to detect any changes during growth and cephalosporin C production. Total lipid yields and cephalosporin C production were maximal after 72 h of incubation. Analysis of the total lipids revealed that the neutral lipid fraction was elevated at this time, whereas polar lipids were depressed. Phosphatidylethanolamine and phosphatidylcholine represented the major phospholipids detected. Phosphatidylethanolamine levels were descending when cephalosporin C was detected at its highest concentration. Increases in phosphatidylcholine levels paralleled those of cephalosporin C but reached a maximum at 48 h after the latter. Diphosphatidylglycerol, phosphatidic acid, and phosphatidylserine were also detected. Fatty acids present in the total lipid fraction ranged in carbon length from C12 to C24. The major acids were C16 (palmitic), C18:1 (oleic), and C18:2 (linoleic). All fatty acids exhibited minor variations in concentration during the 6-day period, and none displayed a direct correlation with cephalosporin C yields.

[Secondary metabolites as endogenous effectors of microbial cytodifferentiation]

The present survey covers the regulatory role of microbial secondary metabolites and related compounds as endogenous signals of cell differentiation of the producing organisms. Several antibiotics have been shown to exert autoregulatory effects on differentiation-associated functions. The mechanisms of self-protection of the producing cells against the autotoxicity of secondary metabolites are discussed in terms of an integral part of the modulation of signal strength. As a further topic, the review deals with the hormone-like interference of particular metabolites with differentiating cells. Conclusive discussion concerns the potential use of microbial signal molecules either as tools for directed manipulations of product syntheses or as pharmaceutics.

[Possibilities for direct manipulation of gene expression of microbial secondary metabolism]

The present review deals with some theoretical and applied aspects of directed manipulations of control mechanisms governing the expression of microbial secondary metabolism. In attempting to make broad generalizations, the production of secondary metabolites is discussed in terms of the cellular differentiation of relevant organisms. On the basis of the actual information about the regulation of microbial idiolite synthesis, some potential ways for the quantitative and the qualitative improvement of secondary metabolite production are discussed. A number of examples demonstrate the effectiveness of rational strategies of strain development, e. g., the removal of non-specific repressions of secondary metabolism by environmental factors, the excessive production of precursors due to altered control of intermediary metabolism, the increased resistance of producer organism against the autotoxicity of some idiolites, the deletion of alternative pathways of the primary and secondary metabolism, manipulations concerning the product spectrum, the deletion of feedback mechanisms, and elimination of degradating pathways in the secondary metabolism etc. The scope and limitations of rational strategies of strain improvement by genetic and physiologic manipulations are subjected to final discussion.