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Assalve G, Lunetti P, Zara V, Ferramosca A. In Vivo Antioxidant Activity of Common Dietary Flavonoids: Insights from the Yeast Model Saccharomyces cerevisiae. Antioxidants (Basel) 2024; 13:1103. [PMID: 39334762 PMCID: PMC11429029 DOI: 10.3390/antiox13091103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 09/05/2024] [Accepted: 09/10/2024] [Indexed: 09/30/2024] Open
Abstract
BACKGROUND Oxidative stress, associated with diseases and aging, underscores the therapeutic potential of natural antioxidants. Flavonoids, known for scavenging free radicals and modulating cell signaling, offer significant health benefits and contribute to longevity. To explore their in vivo effects, we investigated the antioxidant activity of quercetin, apigenin, luteolin, naringenin, and genistein, using Saccharomyces cerevisiae as a model organism. METHODS We performed viability assays to evaluate the effects of these compounds on cell growth, both in the presence and absence of H2O2. Additional assays, including spot assays, drug drop tests, and colony-forming unit assays, were also conducted. RESULTS Viability assays indicated that the tested compounds are non-toxic. H2O2 reduced yeast viability, but flavonoid-treated cells showed increased resistance, confirming their protective effect. Polyphenols scavenged intracellular reactive oxygen species (ROS) and protected cells from oxidative damage. Investigations into defense systems revealed that H2O2 induced catalase activity and oxidized glutathione accumulation, both of which were reduced by polyphenol treatment. CONCLUSIONS The tested natural compounds enhance cell viability and reduce oxidative damage by scavenging ROS and modulating antioxidant defenses. These results suggest their potential as supplements and pave the way for further research.
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Kaur J, Tiwari N, Asif MH, Dharmesh V, Naseem M, Srivastava PK, Srivastava S. Integrated genome-transcriptome analysis unveiled the mechanism of Debaryomyces hansenii-mediated arsenic stress amelioration in rice. JOURNAL OF HAZARDOUS MATERIALS 2024; 469:133954. [PMID: 38484657 DOI: 10.1016/j.jhazmat.2024.133954] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 02/22/2024] [Accepted: 03/02/2024] [Indexed: 04/07/2024]
Abstract
Globally, rice is becoming more vulnerable to arsenic (As) pollution, posing a serious threat to public food safety. Previously Debaryomyces hansenii was found to reduce grain As content of rice. To better understand the underlying mechanism, we performed a genome analysis to identify the key genes in D. hansenii responsible for As tolerance and plant growth promotion. Notably, genes related to As resistance (ARR, Ycf1, and Yap) were observed in the genome of D. hansenii. The presence of auxin pathway and glutathione metabolism-related genes may explain the plant growth-promoting potential and As tolerance mechanism of this novel yeast strain. The genome annotation of D. hansenii indicated that it contains a repertoire of genes encoding antioxidants, well corroborated with the in vitro studies of GST, GR, and glutathione content. In addition, the effect of D. hansenii on gene expression profiling of rice plants under As stress was also examined. The Kyoto Encyclopedia of Genes and Genomes (KEGG) database revealed 307 genes, annotated in D. hansenii-treated rice, related to metabolic pathways (184), photosynthesis (12), glutathione (10), tryptophan (4), and biosynthesis of secondary metabolite (117). Higher expression of regulatory elements like AUX/IAA and WRKY transcription factors (TFs), and defense-responsive genes dismutases, catalases, peroxiredoxin, and glutaredoxins during D. hansenii+As exposure was also observed. Combined analysis revealed that D. hansenii genes are contributing to stress mitigation in rice by supporting plant growth and As-tolerance. The study lays the foundation to develop yeast as a beneficial biofertilizer for As-prone areas.
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Affiliation(s)
- Jasvinder Kaur
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Nikita Tiwari
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Mehar Hasan Asif
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Varsha Dharmesh
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Mariya Naseem
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India
| | - Pankaj Kumar Srivastava
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Suchi Srivastava
- CSIR-National Botanical Research Institute, Rana Pratap Marg, Lucknow 226001, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
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Hsu P, Cheng Y, Liao C, Litan RRR, Jhou Y, Opoc FJG, Amine AAA, Leu J. Rapid evolutionary repair by secondary perturbation of a primary disrupted transcriptional network. EMBO Rep 2023; 24:e56019. [PMID: 37009824 PMCID: PMC10240213 DOI: 10.15252/embr.202256019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 03/16/2023] [Accepted: 03/17/2023] [Indexed: 04/04/2023] Open
Abstract
The discrete steps of transcriptional rewiring have been proposed to occur neutrally to ensure steady gene expression under stabilizing selection. A conflict-free switch of a regulon between regulators may require an immediate compensatory evolution to minimize deleterious effects. Here, we perform an evolutionary repair experiment on the Lachancea kluyveri yeast sef1Δ mutant using a suppressor development strategy. Complete loss of SEF1 forces cells to initiate a compensatory process for the pleiotropic defects arising from misexpression of TCA cycle genes. Using different selective conditions, we identify two adaptive loss-of-function mutations of IRA1 and AZF1. Subsequent analyses show that Azf1 is a weak transcriptional activator regulated by the Ras1-PKA pathway. Azf1 loss-of-function triggers extensive gene expression changes responsible for compensatory, beneficial, and trade-off phenotypes. The trade-offs can be alleviated by higher cell density. Our results not only indicate that secondary transcriptional perturbation provides rapid and adaptive mechanisms potentially stabilizing the initial stage of transcriptional rewiring but also suggest how genetic polymorphisms of pleiotropic mutations could be maintained in the population.
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Affiliation(s)
- Po‐Chen Hsu
- Institute of Molecular BiologyAcademia SinicaTaipeiTaiwan
| | - Yu‐Hsuan Cheng
- Institute of Molecular BiologyAcademia SinicaTaipeiTaiwan
- Present address:
Morgridge Institute for ResearchMadisonWIUSA
- Present address:
Howard Hughes Medical InstituteUniversity of Wisconsin‐MadisonMadisonWIUSA
| | - Chia‐Wei Liao
- Institute of Molecular BiologyAcademia SinicaTaipeiTaiwan
| | | | - Yu‐Ting Jhou
- Institute of Molecular BiologyAcademia SinicaTaipeiTaiwan
| | | | | | - Jun‐Yi Leu
- Institute of Molecular BiologyAcademia SinicaTaipeiTaiwan
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Schnitzer B, Welkenhuysen N, Leake MC, Shashkova S, Cvijovic M. The effect of stress on biophysical characteristics of misfolded protein aggregates in living Saccharomyces cerevisiae cells. Exp Gerontol 2022; 162:111755. [PMID: 35240259 DOI: 10.1016/j.exger.2022.111755] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 02/11/2022] [Accepted: 02/24/2022] [Indexed: 11/28/2022]
Abstract
Aggregation of misfolded or damaged proteins is often attributed to numerous metabolic and neurodegenerative disorders. To reveal underlying mechanisms and cellular responses, it is crucial to investigate protein aggregate dynamics in cells. Here, we used super-resolution single-molecule microscopy to obtain biophysical characteristics of individual aggregates of a model misfolded protein ∆ssCPY* labelled with GFP. We demonstrated that oxidative and hyperosmotic stress lead to increased aggregate stoichiometries but not necessarily the total number of aggregates. Moreover, our data suggest the importance of the thioredoxin peroxidase Tsa1 for the controlled sequestering and clearance of aggregates upon both conditions. Our work provides novel insights into the understanding of the cellular response to stress via revealing the dynamical properties of stress-induced protein aggregates.
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Affiliation(s)
- Barbara Schnitzer
- Department of Mathematical Sciences, Chalmers University of Technology, 412 96 Gothenburg, Sweden; Department of Mathematical Sciences, University of Gothenburg, 412 96 Gothenburg, Sweden
| | - Niek Welkenhuysen
- Department of Mathematical Sciences, Chalmers University of Technology, 412 96 Gothenburg, Sweden; Department of Mathematical Sciences, University of Gothenburg, 412 96 Gothenburg, Sweden
| | - Mark C Leake
- Department of Physics, University of York, YO10 5DD York, UK; Department of Biology, University of York, YO10 5DD York, UK
| | - Sviatlana Shashkova
- Department of Mathematical Sciences, Chalmers University of Technology, 412 96 Gothenburg, Sweden; Department of Mathematical Sciences, University of Gothenburg, 412 96 Gothenburg, Sweden; Department of Physics, University of York, YO10 5DD York, UK.
| | - Marija Cvijovic
- Department of Mathematical Sciences, Chalmers University of Technology, 412 96 Gothenburg, Sweden; Department of Mathematical Sciences, University of Gothenburg, 412 96 Gothenburg, Sweden.
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Sudharshan SJ, Tirupathi R, Dyavaiah M. Astaxanthin reduces perfluorooctanoic acid cytotoxicity in Saccharomyces cerevisiae. Toxicol Res (Camb) 2019; 8:1009-1015. [PMID: 32922741 PMCID: PMC7478099 DOI: 10.1039/c9tx00215d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Accepted: 11/04/2019] [Indexed: 12/18/2022] Open
Abstract
Perfluorooctanoic acid (PFA) has been identified as an environmental contaminant of high concern for human health. In this study, we demonstrated that PFA induces a dose (0 to 1.5 mM) dependent cytotoxicity in S. cerevisiae cells which can be rescued by astaxanthin. The percent sensitivity induced by PFA and the cell protection offered by astaxanthin (30 μM) were demonstrated by CFU counts and spots. The increase in intracellular ROS, superoxide dismutase (SOD), glutathione and lipid peroxidation levels in PFA treated cells suggested that increased oxidative stress resulted in yeast cell death. In contrast, decreased ROS level, increased SOD activity, reduced glutathione and decreased lipid peroxidation by astaxanthin supplementation suggest that the cells are protected from the PFA induced oxidative stress mediated cytotoxicity. Reduced chromatin condensation and nuclear fragmentation in astaxanthin pre-treated cells indicate that astaxanthin rescued the cells from PFA induced apoptosis. Our overall results suggest that PFA induces oxidative stress-mediated cytotoxicity in yeast cells, which were rescued by astaxanthin treatment.
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Affiliation(s)
- S J Sudharshan
- Department of Biochemistry and Molecular Biology , School of Life Sciences , Pondicherry University , Pondicherry 605014 , India .
| | - Raghavendra Tirupathi
- Keystone Health , Department of Infectious Diseases , 830 , Fifth Avenue , Suite 201 , Chambersburg , Pennsylvania 17201 , USA
| | - Madhu Dyavaiah
- Department of Biochemistry and Molecular Biology , School of Life Sciences , Pondicherry University , Pondicherry 605014 , India .
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Subramaniyan S, Alugoju P, SJ S, Veerabhadrappa B, Dyavaiah M. Magnolol protects Saccharomyces cerevisiae antioxidant-deficient mutants from oxidative stress and extends yeast chronological life span. FEMS Microbiol Lett 2019; 366:5423324. [DOI: 10.1093/femsle/fnz065] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2018] [Accepted: 03/27/2019] [Indexed: 12/12/2022] Open
Affiliation(s)
- Subasri Subramaniyan
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry 605014, India
| | - Phaniendra Alugoju
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry 605014, India
| | - Sudharshan SJ
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry 605014, India
| | - Bhavana Veerabhadrappa
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry 605014, India
| | - Madhu Dyavaiah
- Department of Biochemistry and Molecular Biology, School of Life Sciences, Pondicherry University, Pondicherry 605014, India
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Astaxanthin supplementation reduces dichlorvos-induced cytotoxicity in Saccharomyces cerevisiae. 3 Biotech 2019; 9:88. [PMID: 30800599 DOI: 10.1007/s13205-019-1634-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Accepted: 02/11/2019] [Indexed: 01/06/2023] Open
Abstract
This study evaluates the protective effect of astaxanthin against dichlorvos cytotoxicity in yeast Saccharomyces cerevisiae. Dichlorvos induce a dose-dependent cytotoxicity in yeast cells, which is mediated by oxidative stress. Our experimental results showed pre-treatment with astaxanthin enhances cell viability by 20-30% in yeast cells exposed to dichlorvos. A decrease in DCF fluorescence intensity and lipid peroxidation, increased SOD activity, and glutathione levels in astaxanthin-treated cells indicate that astaxanthin protected the cells against dichlorvos-induced oxidative stress. Reduced chromatin condensation and nuclear fragmentation in astaxanthin pre-treated cells also indicate that astaxanthin rescued the cells from dichlorvos-induced apoptosis. Our overall results suggest that dichlorvos induces oxidative stress-mediated cytotoxicity in yeast cells, and that was rescued by astaxanthin pre-treatment.
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Tello-Padilla MF, Perez-Gonzalez AY, Canizal-García M, González-Hernández JC, Cortes-Rojo C, Olivares-Marin IK, Madrigal-Perez LA. Glutathione levels influence chronological life span ofSaccharomyces cerevisiaein a glucose-dependent manner. Yeast 2018; 35:387-396. [DOI: 10.1002/yea.3302] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2017] [Revised: 12/12/2017] [Accepted: 12/14/2017] [Indexed: 12/13/2022] Open
Affiliation(s)
- Mayra Fabiola Tello-Padilla
- Laboratorio de Biotecnología Microbiana, Instituto Tecnológico Superior de Ciudad Hidalgo; Av. Ing. Carlos Rojas Gutiérrez #2120 Ciudad Hidalgo Michoacán 61100 México
| | - Alejandra Yudid Perez-Gonzalez
- Laboratorio de Biotecnología Microbiana, Instituto Tecnológico Superior de Ciudad Hidalgo; Av. Ing. Carlos Rojas Gutiérrez #2120 Ciudad Hidalgo Michoacán 61100 México
| | - Melina Canizal-García
- Laboratorio de Biotecnología Microbiana, Instituto Tecnológico Superior de Ciudad Hidalgo; Av. Ing. Carlos Rojas Gutiérrez #2120 Ciudad Hidalgo Michoacán 61100 México
| | - Juan Carlos González-Hernández
- Laboratorio de Bioquímica del Instituto Tecnológico de Morelia; Av. Tecnológico de Morelia Morelia Michoacán 58030 México
| | - Christian Cortes-Rojo
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo; Morelia Michoacán 58120 México
| | | | - Luis Alberto Madrigal-Perez
- Laboratorio de Biotecnología Microbiana, Instituto Tecnológico Superior de Ciudad Hidalgo; Av. Ing. Carlos Rojas Gutiérrez #2120 Ciudad Hidalgo Michoacán 61100 México
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Saini P, Beniwal A, Vij S. Physiological response of Kluyveromyces marxianus during oxidative and osmotic stress. Process Biochem 2017. [DOI: 10.1016/j.procbio.2017.03.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Induction of energy metabolism related enzymes in yeast Saccharomyces cerevisiae exposed to ibogaine is adaptation to acute decrease in ATP energy pool. Eur J Pharmacol 2009; 627:131-5. [PMID: 19853595 DOI: 10.1016/j.ejphar.2009.10.032] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2009] [Revised: 09/23/2009] [Accepted: 10/13/2009] [Indexed: 11/21/2022]
Abstract
Ibogaine has been extensively studied in the last decades in relation to its anti-addictive properties that have been repeatedly reported as being addiction interruptive and craving eliminative. In our previous study we have already demonstrated induction of energy related enzymes in rat brains treated with ibogaine at a dose of 20mg/kg i.p. 24 and 72 h prior to proteomic analysis. In this study a model organism yeast Saccharomyces cerevisiae was cultivated with ibogaine in a concentration of 1mg/l. Energy metabolism cluster enzymes glyceraldehyde-3-phosphate dehydrogenase, phosphoglycerate kinase, enolase and alcohol dehydrogenase were induced after 5h of exposure. This is a compensation of demonstrated ATP pool decrease after ibogaine. Yeast in a stationary growth phase is an accepted model for studies of housekeeping metabolism of eukaryotes, including humans. Study showed that ibogaine's influence on metabolism is neither species nor tissue specific. Effect is not mediated by binding of ibogaine to receptors, as previously described in literature since they are lacking in this model.
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