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Taiwo OR, Onyeaka H, Oladipo EK, Oloke JK, Chukwugozie DC. Advancements in Predictive Microbiology: Integrating New Technologies for Efficient Food Safety Models. Int J Microbiol 2024; 2024:6612162. [PMID: 38799770 PMCID: PMC11126350 DOI: 10.1155/2024/6612162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 04/01/2024] [Accepted: 04/23/2024] [Indexed: 05/29/2024] Open
Abstract
Predictive microbiology is a rapidly evolving field that has gained significant interest over the years due to its diverse application in food safety. Predictive models are widely used in food microbiology to estimate the growth of microorganisms in food products. These models represent the dynamic interactions between intrinsic and extrinsic food factors as mathematical equations and then apply these data to predict shelf life, spoilage, and microbial risk assessment. Due to their ability to predict the microbial risk, these tools are also integrated into hazard analysis critical control point (HACCP) protocols. However, like most new technologies, several limitations have been linked to their use. Predictive models have been found incapable of modeling the intricate microbial interactions in food colonized by different bacteria populations under dynamic environmental conditions. To address this issue, researchers are integrating several new technologies into predictive models to improve efficiency and accuracy. Increasingly, newer technologies such as whole genome sequencing (WGS), metagenomics, artificial intelligence, and machine learning are being rapidly adopted into newer-generation models. This has facilitated the development of devices based on robotics, the Internet of Things, and time-temperature indicators that are being incorporated into food processing both domestically and industrially globally. This study reviewed current research on predictive models, limitations, challenges, and newer technologies being integrated into developing more efficient models. Machine learning algorithms commonly employed in predictive modeling are discussed with emphasis on their application in research and industry and their advantages over traditional models.
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Affiliation(s)
| | - Helen Onyeaka
- School of Chemical Engineering, University of Birmingham, Edgbaston B15 2TT, Birmingham, UK
| | - Elijah K. Oladipo
- Genomics Unit, Helix Biogen Institute, Ogbomosho, Oyo, Nigeria
- Department of Microbiology, Laboratory of Molecular Biology, Immunology and Bioinformatics, Adeleke University, Ede, Osun, Nigeria
| | - Julius Kola Oloke
- Department of Natural Science, Microbiology Unit, Precious Cornerstone University, Ibadan, Oyo, Nigeria
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Pessoa J, McAloon C, Boyle L, García Manzanilla E, Norton T, Rodrigues da Costa M. Value of simplified lung lesions scoring systems to inform future codes for routine meat inspection in pigs. Porcine Health Manag 2023; 9:31. [PMID: 37391833 DOI: 10.1186/s40813-023-00324-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 06/13/2023] [Indexed: 07/02/2023] Open
Abstract
BACKGROUND Across the European Union (EU), efforts are being made to achieve modernisation and harmonisation of meat inspection (MI) code systems. Lung lesions were prioritised as important animal based measures at slaughter, but existing standardized protocols are difficult to implement for routine MI. This study aimed to compare the informative value and feasibility of simplified lung lesion scoring systems to inform future codes for routine post mortem MI. RESULTS Data on lung lesions in finisher pigs were collected at slaughter targeting 83 Irish pig farms, with 201 batches assessed, comprising 31,655 pairs of lungs. Lungs were scored for cranioventral pulmonary consolidations (CVPC) and pleurisy lesions using detailed scoring systems, which were considered the gold standard. Using the data collected, scenarios for possible simplified scoring systems to record CVPC (n = 4) and pleurisy (n = 4) lesions were defined. The measurable outcomes were the prevalence and (if possible) severity scoring at batch level for CVPC and pleurisy. An arbitrary threshold was set to the upper quartile (i.e., the top 25% of batches with high prevalence/severity of CVPC or pleurisy, n = 50). Each pair of measurable outcomes was compared by calculating Spearman rank correlations and assessing if batches above the threshold for one measurable outcome were also above it for their pairwise comparison. All scenarios showed perfect agreement (k = 1) when compared among themselves and the gold standard for the prevalence of CVPC. The agreement among severity outcomes and the gold standard showed moderate to perfect agreement (k = [0.66, 1]). The changes in ranking were negligible for all measurable outcomes of pleurisy for scenarios 1, 2 and 3 when compared with the gold standard (rs ≥ 0.98), but these changes amounted to 50% for scenario 4. CONCLUSIONS The best simplified CVPC scoring system is to simply count the number of lung lobes affected excluding the intermediate lobe, which provides the best trade-off between value of information and feasibility, by incorporating information on CVPC prevalence and severity. While for pleurisy evaluation, scenario 3 is recommended. This simplified scoring system provides information on the prevalence of cranial and moderate and severe dorsocaudal pleurisy. Further validation of the scoring systems at slaughter and by private veterinarians and farmers is needed.
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Affiliation(s)
- Joana Pessoa
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland.
- Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland.
- Department of Reproduction, Obstetrics and Herd Health, Faculty of Veterinary Medicine, Ghent University, Salisburylaan 133, 9820, Merelbeke, Belgium.
| | - Conor McAloon
- Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland
| | - Laura Boyle
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland
| | - Edgar García Manzanilla
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland
- Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland
| | - Tomas Norton
- M3-BIORES-Measure, Model and Manage Bioresponses, KU Leuven, Leuven, Belgium
| | - Maria Rodrigues da Costa
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland
- Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College (SRUC), An Lòchran, 10 Inverness Campus, Inverness, IV2 5NA, Scotland, UK
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Additional post-mortem inspection procedures and laboratory methods as supplements for visual meat inspection of finishing pigs in Europe—Use and variability. J Verbrauch Lebensm 2022. [DOI: 10.1007/s00003-022-01391-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
AbstractIn the EU, a post-mortem inspection of finishing pigs comprises visual inspections of the carcass and offal followed by additional examinations, such as palpation and incision of parts, when needed. Moreover, it can include various laboratory tests. Since European meat inspection is regulated by the EU, one may assume that post-mortem inspection is performed in the same way in the Member States. However, previous studies showed that variations exist. This article shows the results of a survey performed in September 2020 on how visual meat inspection of finishing pigs is applied in Europe. By using a questionnaire, palpations, incisions and other procedures for 10 gross pathological findings and laboratory methods applied by official veterinarians to evaluate the fitness of meat for human consumption were assessed. We received 44 responses from 26 European countries. Most respondents reported that visual meat inspection was a generally applied inspection method. The main reason for not applying visual meat inspection was export requirements. The most important reasons for applying palpations and incisions in addition to visual inspection were findings detected in ante- or post-mortem inspection. There was considerable variation in the use of palpations and incisions, other post-mortem procedures and laboratory tests to assess meat fitness for human consumption. The respondents mentioned some country-specific practices, but we also observed variations within the responding official veterinarians that could not be explained by country of origin or years of work experience. Additional detailed studies on the variation are needed before harmonisation of meat inspection procedures are attempted.
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Tail-docking and tail biting in pigs: Findings at the slaughterhouse in Portugal. Livest Sci 2021. [DOI: 10.1016/j.livsci.2021.104756] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Food chain information in the European pork industry: Where are we? Trends Food Sci Technol 2021. [DOI: 10.1016/j.tifs.2021.10.030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Pessoa J, McAloon C, Rodrigues da Costa M, García Manzanilla E, Norton T, Boyle L. Adding value to food chain information: using data on pig welfare and antimicrobial use on-farm to predict meat inspection outcomes. Porcine Health Manag 2021; 7:55. [PMID: 34649629 PMCID: PMC8518164 DOI: 10.1186/s40813-021-00234-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2021] [Accepted: 09/27/2021] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Using Food Chain Information data to objectively identify high-risk animals entering abattoirs can represent an important step forward towards improving on-farm animal welfare. We aimed to develop and evaluate the performance of classification models, using Gradient Boosting Machine algorithms that utilise accurate longitudinal on-farm data on pig health and welfare to predict condemnations, pluck lesions and low cold carcass weight at slaughter. RESULTS The accuracy of the models was assessed using the area under the receiver operating characteristics (ROC) curve (AUC). The AUC for the prediction models for pneumonia, dorsocaudal pleurisy, cranial pleurisy, pericarditis, partial and total condemnations, and low cold carcass weight varied from 0.54 for pneumonia and 0.67 for low cold carcass weight. For dorsocaudal pleurisy, ear lesions assessed on pigs aged 12 weeks and antimicrobial treatments (AMT) were the most important prediction variables. Similarly, the most important variable for the prediction of cranial pleurisy was the number of AMT. In the case of pericarditis, ear lesions assessed both at week 12 and 14 were the most important variables and accounted for 33% of the Bernoulli loss reduction. For predicting partial and total condemnations, the presence of hernias on week 18 and lameness on week 12 accounted for 27% and 14% of the Bernoulli loss reduction, respectively. Finally, AMT (37%) and ear lesions assessed on week 12 (15%) were the most important variables for predicting pigs with low cold carcass weight. CONCLUSIONS The findings from our study show that on farm assessments of animal-based welfare outcomes and information on antimicrobial treatments have a modest predictive power in relation to the different meat inspection outcomes assessed. New research following the same group of pigs longitudinally from a larger number of farms supplying different slaughterhouses is required to confirm that on farm assessments can add value to Food Chain Information reports.
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Affiliation(s)
- Joana Pessoa
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland. .,Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland. .,M3-BIORES-Measure, Model and Manage Bioresponses, KU Leuven, Leuven, Belgium.
| | - Conor McAloon
- Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland
| | - Maria Rodrigues da Costa
- Epidemiology Research Unit, Department of Veterinary and Animal Science, Northern Faculty, Scotland's Rural College (SRUC), Inverness, Scotland
| | - Edgar García Manzanilla
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland.,Section of Herd Health and Animal Husbandry, School of Veterinary Medicine, University College Dublin, Belfield, Ireland
| | - Tomas Norton
- M3-BIORES-Measure, Model and Manage Bioresponses, KU Leuven, Leuven, Belgium
| | - Laura Boyle
- Pig Development Department, Teagasc Animal and Grassland Research and Innovation Centre, Moorepark, Ireland
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Antunović B, Blagojević B, Johler S, Guldimann C, Vieira-Pinto M, Vågsholm I, Meemken D, Alvseike O, Georgiev M, Alban L. Challenges and opportunities in the implementation of new meat inspection systems in Europe. Trends Food Sci Technol 2021. [DOI: 10.1016/j.tifs.2021.08.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Predictivity of Antemortem Findings on Postmortem Inspection in Italian Heavy Pigs Slaughterhouses. Animals (Basel) 2021; 11:ani11082470. [PMID: 34438927 PMCID: PMC8388805 DOI: 10.3390/ani11082470] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 08/19/2021] [Accepted: 08/20/2021] [Indexed: 12/19/2022] Open
Abstract
Simple Summary Inspections of pigs before (antemortem) and after (postmortem) being slaughtered are part of the official controls carried out in European abattoirs. The ability of data obtained from the antemortem inspections to predict lesions eventually found during postmortem inspections has not been thoroughly investigated so far. In this study, data obtained from inspections performed both ante- and postmortem in heavy pigs slaughtered in Italy were analyzed, determining the prevalence of the most common lesions and conditions found during the ante- and postmortem inspections and exploring the correlation between these findings. The most common findings were the presence of manure on more than the 30% of the body and pleurisy for antemortem and postmortem inspections, respectively. Some conditions found during the antemortem inspections were predictive of lesions reported during postmortem inspections. For instance, respiratory and kidney lesions were more likely to occur in pigs presenting manure on more than the 30% of the body, whereas dermatitis and skin wounds were more likely to be present in pigs showing skin lesions during the antemortem inspections. The results of this study show that information obtained from the antemortem inspection of pigs can be useful to characterize farms using a risk-based approach and to address the organization of official controls in slaughterhouses. Abstract Pigs slaughtered in European abattoirs must be submitted to antemortem inspection (AMI) and postmortem inspection (PMI), as required by the current European legislation in the matter of official controls. AMI and PMI are equally essential to guarantee food safety and to monitor swine health and welfare. However, little is known about the ability of AMI to predict conditions that are possibly found during PMI. In this study, such a correlation was explored together with the assessment of conditions typically found during AMI and PMI in heavy pigs slaughtered in two Italian slaughterhouses. An assessment scheme containing 13 variables for AMI and 34 lesions for PMI was used for the scope. The herd size was also considered as a variable and included in the study. A total of 24,510 pigs and 30,961 pigs were assessed during AMI and PMI, respectively. The most common conditions found were manure on the body covering more than 30% of the body (dirt >30%) and pluck lesions (‘pleurisy’, ‘pericarditis’, and ‘pneumonia’) for AMI and PMI, respectively. A significant correlation (p < 0.05) between some antemortem (AM) findings and postmortem (PM) conditions was found. In particular, the AM conditions ‘dirt >30%’and ‘skin lesions’ were positively related with PM conditions ‘skin wounds’ and ‘dermatitis’, while the complexes of respiratory and kidney lesions were predicted only by the condition ‘dirt >30%’. The variable ‘standardized herd size’ was negatively associated with ‘milk spot liver’ and positively associated with ‘arthritis/bursitis’. The results of this study show that findings reported during AMI can potentially be used to predict certain conditions found in pigs at PMI. These data can be useful for the competent authorities in characterizing swine farms using a risk-based approach and in developing systems and specific plans for official controls.
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Blagojevic B, Nesbakken T, Alvseike O, Vågsholm I, Antic D, Johler S, Houf K, Meemken D, Nastasijevic I, Vieira Pinto M, Antunovic B, Georgiev M, Alban L. Drivers, opportunities, and challenges of the European risk-based meat safety assurance system. Food Control 2021. [DOI: 10.1016/j.foodcont.2021.107870] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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