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Branstetter MG, Childers AK, Cox-Foster D, Hopper KR, Kapheim KM, Toth AL, Worley KC. Genomes of the Hymenoptera. CURRENT OPINION IN INSECT SCIENCE 2018; 25:65-75. [PMID: 29602364 PMCID: PMC5993429 DOI: 10.1016/j.cois.2017.11.008] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 11/16/2017] [Indexed: 05/06/2023]
Abstract
Hymenoptera is the second-most sequenced arthropod order, with 52 publically archived genomes (71 with ants, reviewed elsewhere), however these genomes do not capture the breadth of this very diverse order (Figure 1, Table 1). These sequenced genomes represent only 15 of the 97 extant families. Although at least 55 other genomes are in progress in an additional 11 families (see Table 2), stinging wasps represent 35 (67%) of the available and 42 (76%) of the in progress genomes. A more comprehensive catalog of hymenopteran genomes is needed for research into the evolutionary processes underlying the expansive diversity in terms of ecology, behavior, and physiological traits within this group. Additional sequencing is needed to generate an assembly for even 0.05% of the estimated 1 million hymenopteran species, and we recommend premier level assemblies for at least 0.1% of the >150,000 named species dispersed across the order. Given the haplodiploid sex determination in Hymenoptera, haploid male sequencing will help minimize genome assembly issues to enable higher quality genome assemblies.
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Affiliation(s)
- Michael G Branstetter
- Pollinating Insect-biology, Management, Systematics Research Unit, USDA-ARS, Logan, UT 84322, United States
| | - Anna K Childers
- Bee Research Laboratory, USDA-ARS, Beltsville, MD 20705, United States
| | - Diana Cox-Foster
- Pollinating Insect-biology, Management, Systematics Research Unit, USDA-ARS, Logan, UT 84322, United States
| | - Keith R Hopper
- Beneficial Insects Introduction Research Unit, USDA-ARS, Newark, DE 19713, United States
| | - Karen M Kapheim
- Utah State University, Department of Biology, Logan, UT 84322, United States
| | - Amy L Toth
- Iowa State University, Department of Ecology, Evolution, and Organismal Biology and Department of Entomology, Ames, IA 50011, United States
| | - Kim C Worley
- Human Genome Sequencing Center, and Department of Molecular and Human Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, United States
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Allen JD, Armstrong AF, Ziegler SL. Environmental Induction of Polyembryony in Echinoid Echinoderms. THE BIOLOGICAL BULLETIN 2015; 229:221-231. [PMID: 26695821 DOI: 10.1086/bblv229n3p221] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Polyembryony, or the production of multiple offspring from a single zygote, is a widespread phenomenon in the animal kingdom. Various types of polyembryony have been described in arthropods, bryozoans, chordates, cnidarians, echinoderms, and platyhelminthes. We describe the induction of polyembryony in embryos of the sand dollar Echinarachnius parma and the pencil urchin Eucidaris tribuloides in response to elevated temperature and reduced salinity. Data on the environmental variation in temperature and salinity that normally occurs during the spawning season, combined with the range of laboratory conditions over which polyembryony was induced, suggest that polyembryony may occur frequently in these species under natural conditions. We tested an additional two species of echinoids for similar responses, but found little evidence for polyembryony in the green urchin Strongylocentrotus droebachiensis or the variegated urchin Lytechinus variegatus, suggesting that polyembryony is not a universal response of echinoids to fluctuations in temperature and salinity. The unexpected developmental changes that we observed in response to present-day fluctuations in temperature and salinity suggest that ongoing and future environmental shifts may drive substantial changes in marine invertebrate developmental patterns, and that these changes will be different across taxa.
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Affiliation(s)
- Jonathan D Allen
- Department of Biology, College of William and Mary, Williamsburg, Virginia 23187; and
| | - Anne Frances Armstrong
- Department of Biology, College of William and Mary, Williamsburg, Virginia 23187; and Center for Population Biology, University of California, Davis, Davis, California 95616
| | - Shelby L Ziegler
- Department of Biology, College of William and Mary, Williamsburg, Virginia 23187; and
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Hu J, Wang P, Zhang W. Two types of embryos with different functions are generated in the polyembryonic wasp Macrocentrus cingulum (Hymenoptera: Braconidae). ARTHROPOD STRUCTURE & DEVELOPMENT 2015; 44:677-687. [PMID: 25936922 DOI: 10.1016/j.asd.2015.04.007] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2014] [Revised: 04/21/2015] [Accepted: 04/21/2015] [Indexed: 06/04/2023]
Abstract
In this study, we report that two types of embryos, normal and pseudogerm, are generated from a single egg of the polyembryonic larval endoparasitoid Macrocentrus cingulum (Braconidae). M. cingulum larvae develop in the host hemocoel, emerging from the host to pupate. After egg cleavage and embryo proliferation dozens of normal embryos and thousands of pseudogerms are generated in the host larva. The difference between normal embryos and pseudogerms is that the former develop into larvae while the latter do not. The primordium that develops in normal embryos is surrounded by an extraembryonic membrane that originates from the syncytium. Pseudogerms in contrast consist only of a syncytium containing many large nuclei and are continuously generated during embryonic development. Both pseudogerms and early embryos possess dense microvilli that function to absorb nutrients from the host. After eclosion wasp larvae produced from normal embryos feed on pseudogerms. Therefore, two types of embryos originating from the same egg serve different functions. These results contribute to our understanding of the development of polyembryonic parasitoids.
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Affiliation(s)
- Jian Hu
- State Key Laboratory of Biocontrol, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China.
| | - Peng Wang
- State Key Laboratory of Biocontrol, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China; Department of Emergency Medicine, Sun Yat-Sen Memorial Hospital, Guangzhou, People's Republic of China
| | - Wenqing Zhang
- State Key Laboratory of Biocontrol, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
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Inoue H, Yoshimura J, Iwabuchi K. Gene expression of protein-coding and non-coding RNAs related to polyembryogenesis in the parasitic wasp, Copidosoma floridanum. PLoS One 2014; 9:e114372. [PMID: 25469914 PMCID: PMC4255003 DOI: 10.1371/journal.pone.0114372] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2014] [Accepted: 11/06/2014] [Indexed: 11/18/2022] Open
Abstract
Polyembryony is a unique form of development in which many embryos are clonally produced from a single egg. Polyembryony is known to occur in many animals, but the underlying genetic mechanism responsible is unknown. In a parasitic wasp, Copidosoma floridanum, polyembryogenesis is initiated during the formation and division of the morula. In the present study, cDNA libraries were constructed from embryos at the cleavage and subsequent primary morula stages, times when polyembryogenesis is likely to be controlled genetically. Of 182 and 263 cDNA clones isolated from these embryos, 38% and 70%, respectively, were very similar to protein-coding genes obtained from BLAST analysis and 55 and 65 clones, respectively, were stage-specific. In our libraries we also detected a high frequency of long non-coding RNA. Some of these showed stage-specific expression patterns in reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis. The stage-specificity of expression implies that these protein-coding and non-coding genes are related to polyembryogenesis in C. floridanum. The non-coding genes are not similar to any known non-coding RNAs and so are good candidates as regulators of polyembryogenesis.
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Affiliation(s)
- Hiroki Inoue
- Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan
| | - Jin Yoshimura
- Graduate School of Science and Technology, and Department of Mathematical and Systems Engineering, Shizuoka University, Hamamatsu, Shizuoka, Japan
- Department of Environmental and Forest Biology, State University of New York College of Environmental Science and Forestry, Syracuse, New York, United States of America
- Marine Biosystems Research Center, Chiba University, Kamogawa, Chiba, Japan
| | - Kikuo Iwabuchi
- Faculty of Agriculture, Tokyo University of Agriculture and Technology, Fuchu, Tokyo, Japan
- * E-mail:
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Farrell JA, O'Farrell PH. From egg to gastrula: how the cell cycle is remodeled during the Drosophila mid-blastula transition. Annu Rev Genet 2014; 48:269-94. [PMID: 25195504 DOI: 10.1146/annurev-genet-111212-133531] [Citation(s) in RCA: 135] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Many, if not most, embryos begin development with extremely short cell cycles that exhibit unusually rapid DNA replication and no gap phases. The commitment to the cell cycle in the early embryo appears to preclude many other cellular processes that only emerge as the cell cycle slows just prior to gastrulation at a major embryonic transition known as the mid-blastula transition (MBT). As reviewed here, genetic and molecular studies in Drosophila have identified changes that extend S phase and introduce a post-replicative gap phase, G2, to slow the cell cycle. Although many mysteries remain about the upstream regulators of these changes, we review the core mechanisms of the change in cell cycle regulation and discuss advances in our understanding of how these might be timed and triggered. Finally, we consider how the elements of this program may be conserved or changed in other organisms.
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Affiliation(s)
- Jeffrey A Farrell
- Department of Molecular and Cellular Biology, Harvard University, Cambridge, Massachusetts 02138;
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Sucena É, Vanderberghe K, Zhurov V, Grbić M. Reversion of developmental mode in insects: evolution from long germband to short germband in the polyembrionic wasp Macrocentrus cingulum Brischke. Evol Dev 2014; 16:233-46. [PMID: 24981069 DOI: 10.1111/ede.12086] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Germband size in insects has played a central role in our understanding of insect patterning mechanisms and their evolution. The polarity of evolutionary change in insect patterning has been viewed so far as the unidirectional shift from the ancestral short germband patterning of basal hemimetabolous insects to the long germband patterning observed in most modern Holometabola. However, some orders of holometabolic insects display both short and long germband development, though the absence of a clear phylogenetic context does not permit definite conclusions on the polarity of change. Derived hymenoptera, that is, bees and wasps, represent a classical textbook example of long germband development. Yet, in some wasps putative short germband development has been described correlating with lifestyle changes, namely with evolution of endoparasitism and polyembryony. To address the potential reversion from long to short germband, we focused on the family Braconidae, which displays ancestral long germband development, and examined the derived polyembryonic braconid Macrocentrus cingulum. Using SEM analysis of M. cingulum embryogenesis coupled with analyses of embryonic patterning markers, we show that this wasp evolved short germband embryogenesis secondarily, in a way that is reminiscent of embryogenesis in the beetle Tribolium castaneum. This work shows that the evolution of germband size in insects is a reversible process that may correlate with other life-history traits and suggests broader implications on the mechanisms and evolvability of insect development.
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Affiliation(s)
- Élio Sucena
- Instituto Gulbenkian de Ciência, Apartado 14, 2781-901, Oeiras, Portugal; Universidade de Lisboa, Faculdade de Ciências, Departamento de Biologia Animal, edifício C2, Campo Grande, 1749-016, Lisboa, Portugal
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Segoli M, Harari AR, Rosenheim JA, Bouskila A, Keasar T. The evolution of polyembryony in parasitoid wasps. J Evol Biol 2010; 23:1807-19. [PMID: 20629853 DOI: 10.1111/j.1420-9101.2010.02049.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Polyembryony has evolved independently in four families of parasitoid wasps. We review three main hypotheses for the selective forces favouring this developmental mode in parasitoids: polyembryony (i) reduces the costs of egg limitation; (ii) reduces the genetic conflict among offspring; and (iii) allows offspring to adjust their numbers to the quality of the host. Using comparative data and verbal and mathematical arguments, we evaluate the relative importance of the different selective forces through different evolutionary stages and in the different groups of polyembryonic wasps. We conclude that reducing the cost of egg limitation is especially important when large broods are favoured. Reducing genetic conflict may be most important when broods are small, thus might have been important during, or immediately following, the initial transition from monoembryony to polyembryony. Empirical data provide little support for the brood-size adjustment hypothesis, although it is likely to interact with other selective forces favouring polyembryony.
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Affiliation(s)
- M Segoli
- Department of Life Sciences, Ben Gurion University, Beer Sheva, Israel
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Vuosku J, Sutela S, Tillman-Sutela E, Kauppi A, Jokela A, Sarjala T, Häggman H. Pine embryogenesis: many licences to kill for a new life. PLANT SIGNALING & BEHAVIOR 2009; 4:928-32. [PMID: 19826239 PMCID: PMC2801355 DOI: 10.4161/psb.4.10.9535] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
In plants, programmed cell death (PCD) is an important mechanism that controls normal growth and development as well as many defence responses. At present, research on PCD in different plant species is actively carried out due to the possibilities offered by modern methods in molecular biology and the increasing amount of genome data. The pine seed provides a favourable model for PCD because it represents an interesting inheritance of seed tissues as well as an anatomically well-described embryogenesis during which several tissues die via morphologically different PCD processes.
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Affiliation(s)
- Jaana Vuosku
- Department of Biology, University of Oulu, Oulu, Finland.
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Segoli M, Harari AR, Bouskila A, Keasar T. Brood size in a polyembryonic parasitoid wasp is affected by relatedness among competing larvae. Behav Ecol 2009. [DOI: 10.1093/beheco/arp057] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Segoli M, Bouskila A, Harari AR, Keasar T. Developmental patterns in the polyembryonic parasitoid wasp Copidosoma koehleri. ARTHROPOD STRUCTURE & DEVELOPMENT 2009; 38:84-90. [PMID: 18638571 DOI: 10.1016/j.asd.2008.05.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2008] [Revised: 05/22/2008] [Accepted: 05/22/2008] [Indexed: 05/26/2023]
Abstract
Polyembryony is a unique mode of development in which multiple genetically identical embryos develop from a single egg. In some polyembryonic species a proportion of the embryos develop into soldier larvae, which attack competitors in the host. We studied the development of the polyembryonic wasp Copidosoma koehleri in its host Phthorimaea opercullela. We dissected hosts parasitized by either virgin or mated female wasps at 2day intervals from hatching to the final instars. We documented host mass and head width, the number and size of developing wasps and the presence of a soldier larva. Additionally, we kept a sample of parasitized hosts until emergence of wasps and measured the head width of emerging adults. We characterized wasp development in relation to host development. One half of the broods produced by mated wasps contained one soldier larva throughout development. This suggests that in C. koehleri each female brood produces a single soldier larva, and that the soldier probably survives and grows gradually during host development. Additionally, we found that female broods were larger than male broods during development and also upon emergence. Accordingly, body size was larger for males during development as well as upon emergence. These findings may extend the existing knowledge on polyembryonic development in general, and serve as a baseline for further experiments.
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Affiliation(s)
- Michal Segoli
- Department of Life Sciences, Ben Gurion University, POB 653, Beer Sheva 84105, Israel.
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