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For: Mammadov JA, Chen W, Ren R, Pai R, Marchione W, Yalçin F, Witsenboer H, Greene TW, Thompson SA, Kumpatla SP. Development of highly polymorphic SNP markers from the complexity reduced portion of maize [Zea mays L.] genome for use in marker-assisted breeding. Theor Appl Genet 2010;121:577-88. [PMID: 20401646 DOI: 10.1007/s00122-010-1331-8] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2009] [Accepted: 03/26/2010] [Indexed: 05/20/2023]
Number Cited by Other Article(s)
1
Development of Novel Markers for Yield in Hevea brasiliensis Muell. Arg. Based on Candidate Genes from Biosynthetic Pathways Associated with Latex Production. Biochem Genet 2022;60:2171-2199. [PMID: 35296963 DOI: 10.1007/s10528-022-10211-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 02/24/2022] [Indexed: 12/22/2022]
2
Bahri BA, Daverdin G, Xu X, Cheng JF, Barry KW, Brummer EC, Devos KM. Natural variation in genes potentially involved in plant architecture and adaptation in switchgrass (Panicum virgatum L.). BMC Evol Biol 2018;18:91. [PMID: 29898656 PMCID: PMC6000970 DOI: 10.1186/s12862-018-1193-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2017] [Accepted: 05/15/2018] [Indexed: 11/24/2022]  Open
3
Kumar J, Gupta DS, Gupta S, Dubey S, Gupta P, Kumar S. Quantitative trait loci from identification to exploitation for crop improvement. PLANT CELL REPORTS 2017;36:1187-1213. [PMID: 28352970 DOI: 10.1007/s00299-017-2127-y] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2016] [Accepted: 03/09/2017] [Indexed: 05/24/2023]
4
Nazareno AG, Bemmels JB, Dick CW, Lohmann LG. Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species. Mol Ecol Resour 2017;17:1136-1147. [DOI: 10.1111/1755-0998.12654] [Citation(s) in RCA: 156] [Impact Index Per Article: 22.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 01/04/2017] [Accepted: 01/09/2017] [Indexed: 12/16/2022]
5
Evaluation of random forest regression for prediction of breeding value from genomewide SNPs. J Genet 2016;94:187-92. [PMID: 26174666 DOI: 10.1007/s12041-015-0501-5] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
6
Yang H, Wei CL, Liu HW, Wu JL, Li ZG, Zhang L, Jian JB, Li YY, Tai YL, Zhang J, Zhang ZZ, Jiang CJ, Xia T, Wan XC. Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing. PLoS One 2016;11:e0151424. [PMID: 26962860 PMCID: PMC4786323 DOI: 10.1371/journal.pone.0151424] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2015] [Accepted: 02/28/2016] [Indexed: 12/19/2022]  Open
7
Wang J, Zhang K, Zhang X, Yan G, Zhou Y, Feng L, Ni Y, Duan X. Construction of Commercial Sweet Cherry Linkage Maps and QTL Analysis for Trunk Diameter. PLoS One 2015;10:e0141261. [PMID: 26516760 PMCID: PMC4627659 DOI: 10.1371/journal.pone.0141261] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2015] [Accepted: 10/05/2015] [Indexed: 12/03/2022]  Open
8
Yang H, Li C, Lam HM, Clements J, Yan G, Zhao S. Sequencing consolidates molecular markers with plant breeding practice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2015;128:779-95. [PMID: 25821196 DOI: 10.1007/s00122-015-2499-8] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2014] [Accepted: 03/14/2015] [Indexed: 05/20/2023]
9
Tian HL, Wang FG, Zhao JR, Yi HM, Wang L, Wang R, Yang Y, Song W. Development of maizeSNP3072, a high-throughput compatible SNP array, for DNA fingerprinting identification of Chinese maize varieties. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2015. [PMID: 26052247 DOI: 10.1007/s11032-015-0202-z] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
10
Tian HL, Wang FG, Zhao JR, Yi HM, Wang L, Wang R, Yang Y, Song W. Development of maizeSNP3072, a high-throughput compatible SNP array, for DNA fingerprinting identification of Chinese maize varieties. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2015;35:136. [PMID: 26052247 PMCID: PMC4449932 DOI: 10.1007/s11032-015-0335-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Accepted: 05/23/2015] [Indexed: 05/03/2023]
11
Patel DA, Zander M, Dalton-Morgan J, Batley J. Advances in plant genotyping: where the future will take us. Methods Mol Biol 2015;1245:1-11. [PMID: 25373745 DOI: 10.1007/978-1-4939-1966-6_1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
12
Grover A, Sharma PC. Development and use of molecular markers: past and present. Crit Rev Biotechnol 2014;36:290-302. [PMID: 25430893 DOI: 10.3109/07388551.2014.959891] [Citation(s) in RCA: 122] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
13
De novo assembly and characterization of the fruit transcriptome of Chinese jujube (Ziziphus jujuba Mill.) Using 454 pyrosequencing and the development of novel tri-nucleotide SSR markers. PLoS One 2014;9:e106438. [PMID: 25184704 PMCID: PMC4153635 DOI: 10.1371/journal.pone.0106438] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2014] [Accepted: 07/29/2014] [Indexed: 12/14/2022]  Open
14
Wang S, Liu Y, Ma L, Liu H, Tang Y, Wu L, Wang Z, Li Y, Wu R, Pang X. Isolation and characterization of microsatellite markers and analysis of genetic diversity in Chinese jujube (Ziziphus jujuba Mill.). PLoS One 2014;9:e99842. [PMID: 24932973 PMCID: PMC4059666 DOI: 10.1371/journal.pone.0099842] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Accepted: 05/17/2014] [Indexed: 11/18/2022]  Open
15
Molecular markers for genetics and plant breeding: the MFLP marker system and its application in narrow-leafed lupin (Lupinus angustifolius). Methods Mol Biol 2014;1069:179-201. [PMID: 23996316 DOI: 10.1007/978-1-62703-613-9_13] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
16
Duarte J, Rivière N, Baranger A, Aubert G, Burstin J, Cornet L, Lavaud C, Lejeune-Hénaut I, Martinant JP, Pichon JP, Pilet-Nayel ML, Boutet G. Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. BMC Genomics 2014;15:126. [PMID: 24521263 PMCID: PMC3925251 DOI: 10.1186/1471-2164-15-126] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2013] [Accepted: 02/05/2014] [Indexed: 12/21/2022]  Open
17
Ray S, Satya P. Next generation sequencing technologies for next generation plant breeding. FRONTIERS IN PLANT SCIENCE 2014;5:367. [PMID: 25126091 PMCID: PMC4115663 DOI: 10.3389/fpls.2014.00367] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2014] [Accepted: 07/09/2014] [Indexed: 05/18/2023]
18
Thirunavukkarasu N, Hossain F, Shiriga K, Mittal S, Arora K, Rathore A, Mohan S, Shah T, Sharma R, Namratha PM, Mithra ASV, Mohapatra T, Gupta HS. Unraveling the genetic architecture of subtropical maize (Zea mays L.) lines to assess their utility in breeding programs. BMC Genomics 2013;14:877. [PMID: 24330649 PMCID: PMC3867671 DOI: 10.1186/1471-2164-14-877] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2013] [Accepted: 12/10/2013] [Indexed: 01/14/2023]  Open
19
Next generation characterisation of cereal genomes for marker discovery. BIOLOGY 2013;2:1357-77. [PMID: 24833229 PMCID: PMC4009793 DOI: 10.3390/biology2041357] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 10/29/2013] [Accepted: 11/08/2013] [Indexed: 12/30/2022]
20
Van K, Kang YJ, Han KS, Lee YH, Gwag JG, Moon JK, Lee SH. Genome-wide SNP discovery in mungbean by Illumina HiSeq. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2013;126:2017-27. [PMID: 23674132 DOI: 10.1007/s00122-013-2114-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/23/2012] [Accepted: 04/20/2013] [Indexed: 05/08/2023]
21
Sequence-based mapping of the polyploid wheat genome. G3-GENES GENOMES GENETICS 2013;3:1105-14. [PMID: 23665877 PMCID: PMC3704239 DOI: 10.1534/g3.113.005819] [Citation(s) in RCA: 111] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
22
A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor. Proc Natl Acad Sci U S A 2013;110:7940-5. [PMID: 23610408 DOI: 10.1073/pnas.1219082110] [Citation(s) in RCA: 178] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
23
Frésard L, Leroux S, Dehais P, Servin B, Gilbert H, Bouchez O, Klopp C, Cabau C, Vignoles F, Feve K, Ricros A, Gourichon D, Diot C, Richard S, Leterrier C, Beaumont C, Vignal A, Minvielle F, Pitel F. Fine mapping of complex traits in non-model species: using next generation sequencing and advanced intercross lines in Japanese quail. BMC Genomics 2012;13:551. [PMID: 23066875 PMCID: PMC3534603 DOI: 10.1186/1471-2164-13-551] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Accepted: 10/08/2012] [Indexed: 11/16/2022]  Open
24
Yang H, Tao Y, Zheng Z, Li C, Sweetingham MW, Howieson JG. Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. BMC Genomics 2012;13:318. [PMID: 22805587 PMCID: PMC3430595 DOI: 10.1186/1471-2164-13-318] [Citation(s) in RCA: 88] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2011] [Accepted: 06/04/2012] [Indexed: 11/29/2022]  Open
25
Kilian B, Graner A. NGS technologies for analyzing germplasm diversity in genebanks. Brief Funct Genomics 2012;11:38-50. [PMID: 22257472 PMCID: PMC3281264 DOI: 10.1093/bfgp/elr046] [Citation(s) in RCA: 74] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]  Open
26
Mammadov J, Aggarwal R, Buyyarapu R, Kumpatla S. SNP markers and their impact on plant breeding. INTERNATIONAL JOURNAL OF PLANT GENOMICS 2012;2012:728398. [PMID: 23316221 PMCID: PMC3536327 DOI: 10.1155/2012/728398] [Citation(s) in RCA: 165] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2012] [Accepted: 11/14/2012] [Indexed: 05/19/2023]
27
Russell JR, Bayer M, Booth C, Cardle L, Hackett CA, Hedley PE, Jorgensen L, Morris JA, Brennan RM. Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC PLANT BIOLOGY 2011;11:147. [PMID: 22035129 PMCID: PMC3217869 DOI: 10.1186/1471-2229-11-147] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2011] [Accepted: 10/28/2011] [Indexed: 05/27/2023]
28
Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EAG, Tuberosa R. High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.). TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2011;123:555-69. [PMID: 21611761 DOI: 10.1007/s00122-011-1607-7] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2011] [Accepted: 04/26/2011] [Indexed: 05/07/2023]
29
Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 2011;12:499-510. [PMID: 21681211 DOI: 10.1038/nrg3012] [Citation(s) in RCA: 1454] [Impact Index Per Article: 111.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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