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Durán-Soria S, Pott DM, Will F, Mesa-Marín J, Lewandowski M, Celejewska K, Masny A, Żurawicz E, Jennings N, Sønsteby A, Krüger E, Osorio S. Exploring Genotype-by-Environment Interactions of Chemical Composition of Raspberry by Using a Metabolomics Approach. Metabolites 2021; 11:metabo11080490. [PMID: 34436431 PMCID: PMC8398420 DOI: 10.3390/metabo11080490] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2021] [Revised: 07/21/2021] [Accepted: 07/26/2021] [Indexed: 12/21/2022] Open
Abstract
Promoting the consumption of fruits is a key objective of nutrition policy campaigns due to their associated health benefits. Raspberries are well appreciated for their remarkable flavor and nutritional value attributable to their antioxidant properties. Consequently, one of the objectives of present-day raspberry breeding programs is to improve the fruit’s sensory and nutritive characteristics. However, developing new genotypes with enhanced quality traits is a complex task due to the intricate impacts genetic and environmental factors have on these attributes, and the difficulty to phenotype them. We used a multi-platform metabolomic approach to compare flavor- and nutritional-related metabolite profiles of four raspberry cultivars (‘Glen Ample’, ‘Schönemann’, ‘Tulameen’ and ‘Veten’) grown in different European climates. Although the cultivars appear to be better adapted to high latitudes, for their content in soluble solids and acidity, multivariate statistical analyses allowed us to underscore important genotypic differences based on the profiles of important metabolites. ‘Schönemann’ and ‘Veten’ were characterized by high levels of anthocyanins and ellagitannins, respectively, ‘Tulameen’ by its acidity, and ‘Glen Ample’ for its content of sucrose and β-ionone, two main flavor contributors. Our results confirmed the value of metabolomic-driven approaches, which may foster the development of cultivars with enhanced health properties and flavor.
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Affiliation(s)
- Sara Durán-Soria
- Departamento de Biología Molecular y Bioquímica, Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Campus de Teatinos, 29071 Málaga, Spain; (S.D.-S.); (D.M.P.); (J.M.-M.)
| | - Delphine M. Pott
- Departamento de Biología Molecular y Bioquímica, Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Campus de Teatinos, 29071 Málaga, Spain; (S.D.-S.); (D.M.P.); (J.M.-M.)
| | - Frank Will
- Institute of Beverage Research, Hochschule Geisenheim University, 65366 Geisenheim, Germany;
| | - Jennifer Mesa-Marín
- Departamento de Biología Molecular y Bioquímica, Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Campus de Teatinos, 29071 Málaga, Spain; (S.D.-S.); (D.M.P.); (J.M.-M.)
| | - Mariusz Lewandowski
- The National Institute of Horticultural Research (INHORT), Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland; (M.L.); (K.C.); (A.M.)
| | - Karolina Celejewska
- The National Institute of Horticultural Research (INHORT), Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland; (M.L.); (K.C.); (A.M.)
| | - Agnieszka Masny
- The National Institute of Horticultural Research (INHORT), Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland; (M.L.); (K.C.); (A.M.)
| | - Edward Żurawicz
- The National Institute of Horticultural Research (INHORT), Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland; (M.L.); (K.C.); (A.M.)
| | - Nikki Jennings
- Department of Genetics, James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK;
| | - Anita Sønsteby
- NIBIO, Norwegian Institute of Bioeconomy Research, 1431 Ås, Norway;
| | - Erika Krüger
- Institute of Pomology, Hochschule Geisenheim University, 65366 Geisenheim, Germany;
| | - Sonia Osorio
- Departamento de Biología Molecular y Bioquímica, Campus de Teatinos, Instituto de Hortofruticultura Subtropical y Mediterránea “La Mayora”, Universidad de Málaga-Consejo Superior de Investigaciones Científicas, Campus de Teatinos, 29071 Málaga, Spain; (S.D.-S.); (D.M.P.); (J.M.-M.)
- Correspondence: ; Tel.: +34-952-132-394
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Carvalho E, Franceschi P, Feller A, Herrera L, Palmieri L, Arapitsas P, Riccadonna S, Martens S. Discovery of A-type procyanidin dimers in yellow raspberries by untargeted metabolomics and correlation based data analysis. Metabolomics 2016; 12:144. [PMID: 27547172 PMCID: PMC5047924 DOI: 10.1007/s11306-016-1090-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/06/2016] [Accepted: 07/27/2016] [Indexed: 11/30/2022]
Abstract
INTRODUCTION Raspberries are becoming increasingly popular due to their reported health beneficial properties. Despite the presence of only trace amounts of anthocyanins, yellow varieties seems to show similar or better effects in comparison to conventional raspberries. OBJECTIVES The aim of this work is to characterize the metabolic differences between red and yellow berries, focussing on the compounds showing a higher concentration in yellow varieties. METHODS The metabolomic profile of 13 red and 12 yellow raspberries (of different varieties, locations and collection dates) was determined by UPLC-TOF-MS. A novel approach based on Pearson correlation on the extracted ion chromatograms was implemented to extract the pseudospectra of the most relevant biomarkers from high energy LC-MS runs. The raw data will be made publicly available on MetaboLights (MTBLS333). RESULTS Among the metabolites showing higher concentration in yellow raspberries it was possible to identify a series of compounds showing a pseudospectrum similar to that of A-type procyanidin polymers. The annotation of this group of compounds was confirmed by specific MS/MS experiments and performing standard injections. CONCLUSIONS In berries lacking anthocyanins the polyphenol metabolism might be shifted to the formation of a novel class of A-type procyanidin polymers.
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Affiliation(s)
- Elisabete Carvalho
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Pietro Franceschi
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Antje Feller
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Lorena Herrera
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Luisa Palmieri
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Panagiotis Arapitsas
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Samantha Riccadonna
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
| | - Stefan Martens
- Research and Innovation Centre, Fondazione Edmund Mach (FEM), Via E. Mach 1, 38010 San Michele all’Adige, Italy
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Gitonga VW, Stolker R, Koning-Boucoiran CFS, Aelaei M, Visser RGF, Maliepaard C, Krens FA. Inheritance and QTL analysis of the determinants of flower color in tetraploid cut roses. MOLECULAR BREEDING : NEW STRATEGIES IN PLANT IMPROVEMENT 2016; 36:143. [PMID: 27795693 PMCID: PMC5055553 DOI: 10.1007/s11032-016-0565-9] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2015] [Accepted: 10/03/2016] [Indexed: 05/09/2023]
Abstract
The success of cut rose cultivars is a direct result of their aesthetic value. The rose industry thrives on novelty, and the production of novel flower color has been extensively studied. The most popular color is red, and it is, therefore, important for breeders to produce a good red cultivar. The final visible color of the flower is a combination of a number of factors including the type of anthocyanin accumulating, modifications to the anthocyanidin molecule, co-pigmentation and vacuolar pH. Here, we analyze the quantitative variation of the biochemical constituents of flower color in a tetraploid rose population and combine this with marker information in the segregating rose population to map the chromosomal locations of putative QTLs for flower color traits. Within our tetraploid population, we found a number of QTLs that were mapped on ICM 1, 2, 6 and 7. We were able to show the effect of the different QTLs on the final visible color of the flower from salmon to dark red.
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Affiliation(s)
- Virginia W. Gitonga
- Wageningen UR Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, The Netherlands
- Selecta Kenya GmbH & Co. KG, P.O. Box 64132, Nairobi, 00620 Kenya
| | - Robert Stolker
- Wageningen UR Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, The Netherlands
- Deliflor Chrysanten b.v., P.O. Box 77, 2676 ZH Maasdijk, The Netherlands
| | - Carole F. S. Koning-Boucoiran
- Wageningen UR Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, The Netherlands
- HAN University of Applied Sciences, P.O. Box 6960, 6503 GL Nijmegen, The Netherlands
| | - Mitra Aelaei
- Department of Horticulture, Tehran University, Karaj, 31587-77871 Iran
- Department of Horticultural Sciences, University of Zanjan, Zanjan, 45371-38791 Iran
| | | | - Chris Maliepaard
- Wageningen UR Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, The Netherlands
| | - Frans A. Krens
- Wageningen UR Plant Breeding, P.O. Box 386, 6700 AJ Wageningen, The Netherlands
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Cavagnaro PF, Iorizzo M, Yildiz M, Senalik D, Parsons J, Ellison S, Simon PW. A gene-derived SNP-based high resolution linkage map of carrot including the location of QTL conditioning root and leaf anthocyanin pigmentation. BMC Genomics 2014; 15:1118. [PMID: 25514876 PMCID: PMC4378384 DOI: 10.1186/1471-2164-15-1118] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2014] [Accepted: 12/11/2014] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Purple carrots accumulate large quantities of anthocyanins in their roots and leaves. These flavonoid pigments possess antioxidant activity and are implicated in providing health benefits. Informative, saturated linkage maps associated with well characterized populations segregating for anthocyanin pigmentation have not been developed. To investigate the genetic architecture conditioning anthocyanin pigmentation we scored root color visually, quantified root anthocyanin pigments by high performance liquid chromatography in segregating F2, F3 and F4 generations of a mapping population, mapped quantitative trait loci (QTL) onto a dense gene-derived single nucleotide polymorphism (SNP)-based linkage map, and performed comparative trait mapping with two unrelated populations. RESULTS Root pigmentation, scored visually as presence or absence of purple coloration, segregated in a pattern consistent with a two gene model in an F2, and progeny testing of F3-F4 families confirmed the proposed genetic model. Purple petiole pigmentation was conditioned by a single dominant gene that co-segregates with one of the genes conditioning root pigmentation. Root total pigment estimate (RTPE) was scored as the percentage of the root with purple color.All five anthocyanin glycosides previously reported in carrot, as well as RTPE, varied quantitatively in the F2 population. For the purpose of QTL analysis, a high resolution gene-derived SNP-based linkage map of carrot was constructed with 894 markers covering 635.1 cM with a 1.3 cM map resolution. A total of 15 significant QTL for all anthocyanin pigments and for RTPE mapped to six chromosomes. Eight QTL with the largest phenotypic effects mapped to two regions of chromosome 3 with co-localized QTL for several anthocyanin glycosides and for RTPE. A single dominant gene conditioning anthocyanin acylation was identified and mapped.Comparative mapping with two other carrot populations segregating for purple color indicated that carrot anthocyanin pigmentation is controlled by at least three genes, in contrast to monogenic control reported previously. CONCLUSIONS This study generated the first high resolution gene-derived SNP-based linkage map in the Apiaceae. Two regions of chromosome 3 with co-localized QTL for all anthocyanin pigments and for RTPE, largely condition anthocyanin accumulation in carrot roots and leaves. Loci controlling root and petiole anthocyanin pigmentation differ across diverse carrot genetic backgrounds.
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Affiliation(s)
- Pablo F Cavagnaro
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
- />CONICET, Facultad de Ciencias Agrarias – Universidad Nacional de Cuyo, and INTA E.E.A. La Consulta, Ex Ruta 40. km 96, La Consulta CC 8, Mendoza, 5567 Argentina
| | - Massimo Iorizzo
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
| | - Mehtap Yildiz
- />Department of Agricultural Biotechnology, Faculty of Agriculture, Yuzuncu Yil University, 65080 Van, Turkey
| | - Douglas Senalik
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
- />USDA-Agricultural Research Service, Vegetable Crops Unit, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
| | - Joshua Parsons
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
| | - Shelby Ellison
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
| | - Philipp W Simon
- />Department of Horticulture, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
- />USDA-Agricultural Research Service, Vegetable Crops Unit, University of Wisconsin-Madison, 1575 Linden Drive, Madison, WI 53706 USA
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Longhi S, Giongo L, Buti M, Surbanovski N, Viola R, Velasco R, Ward JA, Sargent DJ. Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives. HORTICULTURE RESEARCH 2014; 1:1. [PMID: 26504527 PMCID: PMC4591673 DOI: 10.1038/hortres.2014.1] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2013] [Accepted: 11/24/2013] [Indexed: 05/04/2023]
Abstract
The Rosoideae is a subfamily of the Rosaceae that contains a number of species of economic importance, including the soft fruit species strawberry (Fragaria ×ananassa), red (Rubus idaeus) and black (Rubus occidentalis) raspberries, blackberries (Rubus spp.) and one of the most economically important cut flower genera, the roses (Rosa spp.). Molecular genetics and genomics resources for the Rosoideae have developed rapidly over the past two decades, beginning with the development and application of a number of molecular marker types including restriction fragment length polymorphisms, amplified fragment length polymorphisms and microsatellites, and culminating in the recent publication of the genome sequence of the woodland strawberry, Fragaria vesca, and the development of high throughput single nucleotide polymorphism (SNP)-genotyping resources for Fragaria, Rosa and Rubus. These tools have been used to identify genes and other functional elements that control traits of economic importance, to study the evolution of plant genome structure within the subfamily, and are beginning to facilitate genomic-assisted breeding through the development and deployment of markers linked to traits such as aspects of fruit quality, disease resistance and the timing of flowering. In this review, we report on the developments that have been made over the last 20 years in the field of molecular genetics and structural genomics within the Rosoideae, comment on how the knowledge gained will improve the efficiency of cultivar development and discuss how these advances will enhance our understanding of the biological processes determining agronomically important traits in all Rosoideae species.
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Affiliation(s)
- Sara Longhi
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Lara Giongo
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Matteo Buti
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Nada Surbanovski
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Roberto Viola
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | - Riccardo Velasco
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
| | | | - Daniel J Sargent
- Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Italy
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