Degradation of phenanthrene in river sediment under nitrate-reducing conditions

Effects of electron acceptors and donors on anaerobic biodegradation of PAHs in marine sediments

Polycyclic aromatic hydrocarbons (PAHs) are typical organic pollutants accumulated in the environment. PAHs' bioremediation in sediments can be promoted by adding electron acceptor (EA) and electron donor (ED). Bicarbonate and sulfate were chosen as two EAs, and acetate and lactate were selected as two EDs. Six groups of amendments were added into the sediments to access their role in the anaerobic biodegradation of five PAHs, containing phenanthrene, anthracene, fluoranthene, pyrene, and benzo[a]pyrene. The concentrations of PAHs, EAs and EDs, electron transport system activity, and microbial diversity were analyzed during 126-day biodegradation in serum bottles. The HA group (bicarbonate and acetate) achieved the maximum PAH degradation efficiency of 89.67 %, followed by the SL group (sulfate and lactate) with 87.10 %. As the main PAHs degrading bacteria, the abundance of Marinobacter in H group was 8.62 %, and the addition of acetate significantly increased the abundance of Marinobacter in the HA group by 75.65 %.

Interactions of PAH-degradation and nitrate-/sulfate-reducing assemblages in anaerobic sediment microbial community

Nitrate and sulfate are electron acceptors (EAs) for biodegradation of polycyclic aromatic hydrocarbons (PAHs) in anaerobic sediments. The efficiency of PAHs biodegradation depends on the strength of the interactions between PAH-degradation and EA-reduction assemblages. However, these interactions are less studied. In this study, microbial response and PAH degradation efficiencies in river sediment were investigated using nitrate and sulfate stimulation. Results showed that the functional assemblages (PAH-degraders, nitrate- and sulfate- reducers) were low connectivity in the microbial network without EA adding. Nitrate input rapidly (<1 day) raised the nitrate reduction intensity. And the PAH-degraders and nitrate reducers established significant and direct correlations under nitrate stimulation, seen from the 13 connectors (nodes) in the microbial network. In contrast, sulfate reducers slowly increased in abundance (>20 days) and were connected to PAH-degraders through indirect connection under sulfate stimulation. The null model suggested that nitrate led to a higher level of directional selection, which implied that nitrate was a more favorable EA to trigger the deterministic succession. As a result, PAHs degradation was faster with nitrate stimulation (t_1/2 = 68.3 d) than with sulfate stimulation (t_1/2 = 164.6 d). These mechanistic understandings can serve as the guidelines for EA selection in bioremediation.

Potential of dissimilatory nitrate reduction pathways in polycyclic aromatic hydrocarbon degradation

This study investigates the potential of an indigenous estuarine microbial consortium to degrade two polycyclic aromatic hydrocarbons (PAHs), naphthalene and fluoranthene, under nitrate-reducing conditions. Two physicochemically diverse sediment samples from the Lima Estuary (Portugal) were spiked individually with 25 mg L^-1 of each PAH in laboratory designed microcosms. Sediments without PAHs and autoclaved sediments spiked with PAHs were run in parallel. Destructive sampling at the beginning and after 3, 6, 12, 30 and 63 weeks incubation was performed. Naphthalene and fluoranthene levels decreased over time with distinct degradation dynamics varying with sediment type. Next-generation sequencing (NGS) of 16 S rRNA gene amplicons revealed that the sediment type and incubation time were the main drivers influencing the microbial community structure rather than the impact of PAH amendments. Predicted microbial functional analyses revealed clear shifts and interrelationships between genes involved in anaerobic and aerobic degradation of PAHs and in the dissimilatory nitrate-reducing pathways (denitrification and dissimilatory nitrate reduction to ammonium - DNRA). These findings reinforced by clear biogeochemical denitrification signals (NO₃^- consumption, and NH₄⁺ increased during the incubation period), suggest that naphthalene and fluoranthene degradation may be coupled with denitrification and DNRA metabolism. The results of this study contribute to the understanding of the dissimilatory nitrate-reducing pathways and help uncover their involvement in degradation of PAHs, which will be crucial for directing remediation strategies of PAH-contaminated anoxic sediments.

Determination of optimal phenanthrene, sulfate and biomass concentrations for anaerobic biodegradation of phenanthrene by sulfate-reducing bacteria and elucidation of metabolic pathway

Anaerobic biodegradation of phenanthrene (PHE) was investigated using an enrichment culture consists predominantly of sulfate-reducing bacteria (87+/-6%). Aqueous biodegradation experiments were designed using the rotatable central composite design with five levels. The designed concentrations were 2-50 mg L(-1) for PHE, 480-3360 mg L(-1) for sulfate, and 5-50 mg L(-1) for initial biomass. Experimental results indicated that the biomass concentration was the most significant variable, followed by the sulfate and PHE concentrations. The desirability functions methodology (DFM) was applied to find out the maximum specific PHE removal rate (R(s)). The maximum R(s) of 9.0 mg g(-1)VSS d(-1) within the designed ranges was obtained when the initial PHE, sulfate and biomass concentrations were 18.5, 841 and 50 mg L(-1), respectively. The R(s) observed in the present study was higher than the values reported in the previous studies. Subsequently, a confirmation study was performed under the optimal conditions, and the results matched well with the R(s) estimated using DFM. Samples collected during PHE biodegradation experiments inferred the formation of two novel metabolic intermediates, 2-methyl-5-hydroxybenzaldehyde and 1-propenyl-benzene, and subsequently degraded to p-cresol, phenol and hydrocarbons.

Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a review

PAHs are aromatic hydrocarbons with two or more fused benzene rings with natural as well as anthropogenic sources. They are widely distributed environmental contaminants that have detrimental biological effects, toxicity, mutagenecity and carcinogenicity. Due to their ubiquitous occurrence, recalcitrance, bioaccumulation potential and carcinogenic activity, the PAHs have gathered significant environmental concern. Although PAH may undergo adsorption, volatilization, photolysis, and chemical degradation, microbial degradation is the major degradation process. PAH degradation depends on the environmental conditions, number and type of the microorganisms, nature and chemical structure of the chemical compound being degraded. They are biodegraded/biotransformed into less complex metabolites, and through mineralization into inorganic minerals, H(2)O, CO(2) (aerobic) or CH(4) (anaerobic) and rate of biodegradation depends on pH, temperature, oxygen, microbial population, degree of acclimation, accessibility of nutrients, chemical structure of the compound, cellular transport properties, and chemical partitioning in growth medium. A number of bacterial species are known to degrade PAHs and most of them are isolated from contaminated soil or sediments. Pseudomonas aeruginosa, Pseudomons fluoresens, Mycobacterium spp., Haemophilus spp., Rhodococcus spp., Paenibacillus spp. are some of the commonly studied PAH-degrading bacteria. Lignolytic fungi too have the property of PAH degradation. Phanerochaete chrysosporium, Bjerkandera adusta, and Pleurotus ostreatus are the common PAH-degrading fungi. Enzymes involved in the degradation of PAHs are oxygenase, dehydrogenase and lignolytic enzymes. Fungal lignolytic enzymes are lignin peroxidase, laccase, and manganese peroxidase. They are extracellular and catalyze radical formation by oxidation to destabilize bonds in a molecule. The biodegradation of PAHs has been observed under both aerobic and anaerobic conditions and the rate can be enhanced by physical/chemical pretreatment of contaminated soil. Addition of biosurfactant-producing bacteria and light oils can increase the bioavailability of PAHs and metabolic potential of the bacterial community. The supplementation of contaminated soils with compost materials can also enhance biodegradation without long-term accumulation of extractable polar and more available intermediates. Wetlands, too, have found an application in PAH removal from wastewater. The intensive biological activities in such an ecosystem lead to a high rate of autotrophic and heterotrophic processes. Aquatic weeds Typha spp. and Scirpus lacustris have been used in horizontal-vertical macrophyte based wetlands to treat PAHs. An integrated approach of physical, chemical, and biological degradation may be adopted to get synergistically enhanced removal rates and to treat/remediate the contaminated sites in an ecologically favorable process.

Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soil

Known concentrations of phenanthrene, pyrene, anthracene, fluorene and acenapthene were added to soil samples to investigate the anaerobic degradation potential of polycyclic aromatic hydrocarbon (PAH). Consortia-treated river sediments taken from known sites of long-term pollution were added as inoculum. Mixtures of soil, consortia, and PAH (individually or combined) were amended with nutrients and batch incubated. High-to-low degradation rates for both soil types were phenanthrene > pyrene > anthracene > fluorene > acenaphthene. Degradation rates were faster in Taida soil than in Guishan soil. Faster individual PAH degradation rates were also observed in cultures containing a mixture of PAH substrates compared to the presence of a single substrate. Optimal incubation conditions were noted as pH 8.0 and 30 degrees C. Degradation was enhanced for PAH by the addition of acetate, lactate, or pyruvate. The addition of municipal sewage or oil refinery sludge to the soil samples stimulated PAH degradation. Biodegradation was also measured under three anaerobic conditions; results show the high-to-low order of biodegradation rates to be sulfate-reducing conditions > methanogenic conditions > nitrate-reducing conditions. The results show that sulfate-reducing bacteria, methanogen, and eubacteria are involved in the PAH degradation; sulfate-reducing bacteria constitute a major component of the PAH-adapted consortia.