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Kaur H, Mir RA, Hussain SJ, Prasad B, Kumar P, Aloo BN, Sharma CM, Dubey RC. Prospects of phosphate solubilizing microorganisms in sustainable agriculture. World J Microbiol Biotechnol 2024; 40:291. [PMID: 39105959 DOI: 10.1007/s11274-024-04086-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2024] [Accepted: 07/16/2024] [Indexed: 08/07/2024]
Abstract
Phosphorus (P), an essential macronutrient for various plant processes, is generally a limiting soil component for crop growth and yields. Organic and inorganic types of P are copious in soils, but their phyto-availability is limited as it is present largely in insoluble forms. Although phosphate fertilizers are applied in P-deficit soils, their undue use negatively impacts soil quality and the environment. Moreover, many P fertilizers are lost because of adsorption and fixation mechanisms, further reducing fertilizer efficiencies. The application of phosphate-solubilizing microorganisms (PSMs) is an environmentally friendly, low-budget, and biologically efficient method for sustainable agriculture without causing environmental hazards. These beneficial microorganisms are widely distributed in the rhizosphere and can hydrolyze inorganic and organic insoluble P substances to soluble P forms which are directly assimilated by plants. The present review summarizes and discusses our existing understanding related to various forms and sources of P in soils, the importance and P utilization by plants and microbes,, the diversification of PSMs along with mixed consortia of diverse PSMs including endophytic PSMs, the mechanism of P solubilization, and lastly constraints being faced in terms of production and adoption of PSMs on large scale have also been discussed.
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Affiliation(s)
- Harmanjit Kaur
- Department of Botany, University of Allahabad, Prayagraj, Uttar Pradesh, 211002, India
| | - Rakeeb Ahmad Mir
- Department of Biotechnology, School of Life Sciences, Central University of Kashmir, Ganderbal, Jammu, Kashmir, 191201, India
| | - Sofi Javed Hussain
- Department of Botany, Central University of Kashmir, Ganderbal, Jammu, Kashmir, 191201, India
| | - Bhairav Prasad
- Department of Biotechnology, Chandigarh Group of Colleges, SAS Nagar, Landran, Punjab, 140307, India
| | - Pankaj Kumar
- Department of Botany and Microbiology, School of Life Sciences, H.N.B. Garhwal University (A Central University), Srinagar Garhwal, Uttarakhand, 246174, India.
| | - Becky N Aloo
- Department of Biological Sciences, University of Eldoret, P. O. Box 1125-30100, Eldoret, Kenya
| | - Chandra Mohan Sharma
- Department of Botany and Microbiology, School of Life Sciences, H.N.B. Garhwal University (A Central University), Srinagar Garhwal, Uttarakhand, 246174, India
| | - Ramesh Chandra Dubey
- Department of Botany and Microbiology, Gurukul Kangri Vishwavidyalaya, Haridwar, Uttarakhand, 249404, India
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González-Benítez N, Bautista LF, Simarro R, Vargas C, Salmerón A, Murillo Y, Molina MC. Bacterial diversity in aqueous/sludge phases within diesel fuel storage tanks. World J Microbiol Biotechnol 2020; 36:180. [PMID: 33164118 DOI: 10.1007/s11274-020-02956-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Accepted: 10/27/2020] [Indexed: 10/23/2022]
Abstract
Diesel fuel storage tanks are not hostile environments for microorganisms and tend to form sludges in the water deposited at the bottom of the tanks. The lack of nutrient, carbon and energy limitations within these habitats boost the abundance and the metabolic activity of microorganisms providing microbial hotspots with high growing rates of diesel degradation (0.10 ± 0.021 d-1). Five different Phyla (Thermotogae, Spirochaetes, Firmicutes, Bacteroidetes Proteobacteria) were identified within the aqueous/sludge phase from in situ diesel storage tanks, by cultured independent molecular surveys using the 16S rDNA gene fragment. The identified dominant strains were Geotoga aestuarianus, Flavobacterium ceti, Spirochaeta thermophila, Propionispira arboris, Sporobacterium olearium and Dysgonomonas genera. The altitude where the storage tanks are located and the organic carbon concentration within the aqueous/sludge phases affected the bacterial diversity. Therefore, the more diverse the microbial communities are, the more probability of the presence of bacteria with capacity to metabolized diesel and eliminate organic matter. Despite, only phosphate showed an effect on the bacterial distribution within the storage tanks, there was an apparent lack of deterministic process in structuring microbial communities. Consequently, preventative protocols are a priority to avoid the microbial growth within diesel fuel storage tanks. A new focus of this worldwide problem within the oil industry would be to explore deeply the wide range of metabolic and adaptive capacities of these microorganisms. These microbial consortia are potential tools with new specific services to apply in bioremediation among others.
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Affiliation(s)
- Natalia González-Benítez
- Department of Biology, Geology, Physics and Inorganic Chemistry, ESCET, Universidad Rey Juan Carlos., 28933, Móstoles, Madrid, Spain.
| | - Luis Fernando Bautista
- Department of Chemical and Environmental Technology, ESCET, Universidad Rey Juan Carlos, 28933, Móstoles, Madrid, Spain
| | - Raquel Simarro
- Department of Biology, Geology, Physics and Inorganic Chemistry, ESCET, Universidad Rey Juan Carlos., 28933, Móstoles, Madrid, Spain
| | - Carolina Vargas
- Department of Chemical and Environmental Technology, ESCET, Universidad Rey Juan Carlos, 28933, Móstoles, Madrid, Spain
| | - Armando Salmerón
- Repsol Technology Centre, C/ Agustín de Betancourt, s/n., 28935, Móstoles, Madrid, Spain
| | - Yolanda Murillo
- Repsol Technology Centre, C/ Agustín de Betancourt, s/n., 28935, Móstoles, Madrid, Spain
| | - María Carmen Molina
- Department of Biology, Geology, Physics and Inorganic Chemistry, ESCET, Universidad Rey Juan Carlos., 28933, Móstoles, Madrid, Spain
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A High Throughput Isolation Method for Phosphate-Accumulating Organisms. Sci Rep 2019; 9:18083. [PMID: 31792245 PMCID: PMC6888830 DOI: 10.1038/s41598-019-53429-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2019] [Accepted: 11/01/2019] [Indexed: 11/08/2022] Open
Abstract
Hyperphosphatemia is a secondary issue associated with chronic kidney disorder. Use of phosphate binders and dialysis are the treatments for hyperphosphatemia, albeit with harmful side effects and high cost, respectively. A safer and healthier approach is attempted to administer phosphate-accumulating organisms (PAOs) from probiotics to prevent hyperphosphatemia. However, screening and isolation of PAOs are limited by inefficient enrichment of relevant metabolism and contamination. Therefore, we devised a novel strategy to isolate elite PAOs from Lactobacillus casei JCM 1134 and Bifidobacterium adolescentis JCM 1275 (previously reported PAOs). PAOs were first enriched for phosphate uptake and incubated in low-pH phosphate-free media to dormant non-PAOs, and then purified using Percoll density gradient centrifugation. Subsequently, elite PAOs were isolated from centrifuged pellet on a toluidine blue O-supplemented agar-based media. Using this technique, elite PAOs could not only be isolated, but also semi-quantitatively scored for their phosphate accumulation capabilities. Additionally, these scores correlated well with their accumulated phosphate values. The elite PAOs isolated from L. casei and B. adolescentis showed 0.81 and 0.70 [mg-phosphate/mg-dry cell], respectively (23- and 4.34-fold increase, respectively). Thus, our method can be used to successfully isolate elite PAOs, which might be of use to prevent hyperphosphatemia at early stages.
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Anand A, Sato M, Aoyagi H. Screening of Phosphate-accumulating Probiotics for Potential Use in Chronic Kidney Disorder. FOOD SCIENCE AND TECHNOLOGY RESEARCH 2019. [DOI: 10.3136/fstr.25.89] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Ajeeta Anand
- Institute of Life Sciences and Bioengineering, Graduate School of Life and Environmental Sciences, University of Tsukuba
| | - Mayuko Sato
- Institute of Life Sciences and Bioengineering, Graduate School of Life and Environmental Sciences, University of Tsukuba
| | - Hideki Aoyagi
- Institute of Life Sciences and Bioengineering, Graduate School of Life and Environmental Sciences, University of Tsukuba
- Faculty of Life and Environmental Sciences, University of Tsukuba
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Manjunath M, Kanchan A, Ranjan K, Venkatachalam S, Prasanna R, Ramakrishnan B, Hossain F, Nain L, Shivay YS, Rai AB, Singh B. Beneficial cyanobacteria and eubacteria synergistically enhance bioavailability of soil nutrients and yield of okra. Heliyon 2016; 2:e00066. [PMID: 27441245 PMCID: PMC4945968 DOI: 10.1016/j.heliyon.2016.e00066] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2015] [Revised: 01/12/2016] [Accepted: 01/15/2016] [Indexed: 12/25/2022] Open
Abstract
Microorganisms in the rhizosphere mediate the cycling of nutrients, their enhanced mobilisation and facilitate their uptake, leading to increased root growth, biomass and yield of plants. We examined the promise of beneficial cyanobacteria and eubacteria as microbial inoculants, applied singly or in combination as consortia or biofilms, to improve growth and yields of okra. Interrelationships among the microbial activities and the micro/macro nutrient dynamics in soils and okra yield characteristics were assessed along with the changes in the soil microbiome. A significant effect of microbial inoculation on alkaline phosphatase activity was recorded both at the mid-crop and harvest stages. Microbial biomass carbon values were highest due to the Anabaena sp. - Providencia sp. (CR1 + PR3) application. The yield of okra ranged from 444.6-478.4 g(-1) plant and a positive correlation (0.69) recorded between yield and root weight. The application of Azotobacter led to the highest root weight and yield. The concentration of Zn at mid-crop stage was 60-70% higher in the Azotobacter sp. and Calothrix sp. inoculated soils, as compared to uninoculated control. Iron concentration in soil was more than 2-3 folds higher than control at the mid-crop stage, especially due to the application of Anabaena-Azotobacter biofilm and Azotobacter sp. Both at the mid-crop and harvest stages, the PCR-DGGE profiles of eubacterial communities were similar among the uninoculated control, the Anabaena sp. - Providencia sp. (CW1 + PW5) and the Anabaena-Azotobacter biofilm treatments. Although the profiles of the Azotobacter, Calothrix and CR1 + PR3 treatments were identical at these stages of growth, the profile of CR1 + PR3 was clearly distinguishable. The performance of the inoculants, particularly Calothrix (T6) and consortium of Anabaena and Providencia (CR1 + PR3; T5), in terms of microbiological and nutrient data, along with generation of distinct PCR-DGGE profiles suggested their superiority and emphasized the utility of combining microbiological and molecular tools in the selection of effective microbial inoculants.
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Affiliation(s)
- Mallappa Manjunath
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Jakhini, Sahanshapur, Varanasi, 221305, Uttar Pradesh, India
| | - Amrita Kanchan
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Kunal Ranjan
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Siddarthan Venkatachalam
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Radha Prasanna
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | | | - Firoz Hossain
- Division of Genetics, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Lata Nain
- Division of Microbiology, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Yashbir Singh Shivay
- Division of Agronomy, ICAR-Indian Agricultural Research Institute (IARI), New Delhi, 110012, India
| | - Awadhesh Bahadur Rai
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Jakhini, Sahanshapur, Varanasi, 221305, Uttar Pradesh, India
| | - Bijendra Singh
- Division of Crop Protection, ICAR-Indian Institute of Vegetable Research, Jakhini, Sahanshapur, Varanasi, 221305, Uttar Pradesh, India
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Kulakovskaya TV, Lichko LP, Ryazanova LP. Diversity of phosphorus reserves in microorganisms. BIOCHEMISTRY (MOSCOW) 2015; 79:1602-14. [PMID: 25749167 DOI: 10.1134/s0006297914130100] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Phosphorus compounds are indispensable components of the Earth's biomass metabolized by all living organisms. Under excess of phosphorus compounds in the environment, microorganisms accumulate reserve phosphorus compounds that are used under phosphorus limitation. These compounds vary in their structure and also perform structural and regulatory functions in microbial cells. The most common phosphorus reserve in microorganism is inorganic polyphosphates, but in some archae and bacteria insoluble magnesium phosphate plays this role. Some yeasts produce phosphomannan as a phosphorus reserve. This review covers also other topics, i.e. accumulation of phosphorus reserves under nutrient limitation, phosphorus reserves in activated sludge, mycorrhiza, and the role of mineral phosphorus compounds in mammals.
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Affiliation(s)
- T V Kulakovskaya
- Skryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia.
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Lichko LP, Kulakovskaya TV, Kulaev IS. Extracellular phosphomannan as a phosphate reserve in the yeast Kuraishia capsulata. BIOCHEMISTRY (MOSCOW) 2013; 78:674-7. [DOI: 10.1134/s0006297913060138] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Almeida DM, Prestes RA, da Fonseca AF, Woiciechowski AL, Wosiacki G. Minerals consumption by Acetobacter xylinum on cultivation medium on coconut water. Braz J Microbiol 2013; 44:197-206. [PMID: 24159306 PMCID: PMC3804200 DOI: 10.1590/s1517-83822013005000012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2011] [Accepted: 07/02/2012] [Indexed: 11/21/2022] Open
Abstract
The objective of this work is to verifying the consume of the minerals K, Na, Fe, Mg, P, S-SO4 (-2), B, N Total Kjedahl (NTK), NO3 (-)-N, and NH4 (+)-N in the production of bacterial cellulose by Acetobacter xylinum, according to the medium and the manner of cultivation. The fermentative process was in ripe and green coconut water. K and Na were determined by flame emission photometry, Mg and Fe by atomic absorption spectrophotometry, P by molecular absorption spectrophotometry, S-SO4 (-2) by barium sulphate turbidimetry, B by Azomethin-H method, NTK by Kjeldahl method, N-NO3 (-) and N-NH4 (+) by vapor distillation with magnesium oxide and Devarda's alloy, respectively. In Fermentation of ripe coconut water there were higher consumption of K (69%), Fe (84,3%), P (97,4%), S-SO2 (-2) (64,9%), B (56,1%), N-NO3 (-) (94,7%) and N-NH4 (+) (95,2%), whereas coconut water of green fruit the most consumed ions were Na (94,5%), Mg (67,7%) and NTK (56,6%). The cultivation under agitation showed higher mineral consumption. The higher bacterial cellulose production, 6 g.L(-1), was verified in the coconut water fermentative in ripe fruit, added KH2PO4, FeSO4 and NaH2PO4 kept under agitation.
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Affiliation(s)
- Denise Milleo Almeida
- Programa de Pós-Graduação em Processos Biotecnológicos, Universidade Federal do Paraná, Curitiba, PR, Brazil
- Departamentos de Alimentos, Universidade Tecnológica Federal do Paraná, Campus Ponta Grossa, Ponta Grossa, PR, Brazil
| | - Rosilene Aparecida Prestes
- Programa de Pós-Graduação em Ciências e Tecnologia de Alimentos, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil
| | - Adriel Ferreira da Fonseca
- Departamento de Ciência do Solo e Engenharia Agrícola, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil
| | - Adenise L. Woiciechowski
- Programa de Pós-Graduação em Processos Biotecnológicos, Universidade Federal do Paraná, Curitiba, PR, Brazil
| | - Gilvan Wosiacki
- Programa de Pós-Graduação em Processos Biotecnológicos, Universidade Federal do Paraná, Curitiba, PR, Brazil
- Programa de Pós-Graduação em Ciências e Tecnologia de Alimentos, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil
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Breus NA, Ryazanova LP, Dmitriev VV, Kulakovskaya TV, Kulaev IS. Accumulation of phosphate and polyphosphate by Cryptococcus humicola and Saccharomyces cerevisiae in the absence of nitrogen. FEMS Yeast Res 2012; 12:617-24. [DOI: 10.1111/j.1567-1364.2012.00812.x] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2011] [Revised: 03/06/2012] [Accepted: 05/02/2012] [Indexed: 12/01/2022] Open
Affiliation(s)
- Natalia A. Breus
- Skryabin Institute of Biochemistry and Physiology of Microorganisms; Russian Academy of Sciences; Pushchino; Russia
| | - Lubov P. Ryazanova
- Skryabin Institute of Biochemistry and Physiology of Microorganisms; Russian Academy of Sciences; Pushchino; Russia
| | - Vladimir V. Dmitriev
- Skryabin Institute of Biochemistry and Physiology of Microorganisms; Russian Academy of Sciences; Pushchino; Russia
| | - Tatiana V. Kulakovskaya
- Skryabin Institute of Biochemistry and Physiology of Microorganisms; Russian Academy of Sciences; Pushchino; Russia
| | - Igor S. Kulaev
- Skryabin Institute of Biochemistry and Physiology of Microorganisms; Russian Academy of Sciences; Pushchino; Russia
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Breus NA, Ryazanova LP, Suzina NE, Kulakovskaya NV, Valiakhmetov AY, Yashin VA, Sorokin VV, Kulaev IS. Accumulation of inorganic polyphosphates in Saccharomyces cerevisiae under nitrogen deprivation: Stimulation by magnesium ions and peculiarities of localization. Microbiology (Reading) 2011. [DOI: 10.1134/s002626171105002x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Chaudhry V, Nautiyal CS. A high throughput method and culture medium for rapid screening of phosphate accumulating microorganisms. BIORESOURCE TECHNOLOGY 2011; 102:8057-8062. [PMID: 21705216 DOI: 10.1016/j.biortech.2011.05.045] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2011] [Revised: 05/17/2011] [Accepted: 05/18/2011] [Indexed: 05/31/2023]
Abstract
A novel PA Medium (PAM) for efficient screening of phosphate-accumulating organisms (PAOs) was developed taking Serratia marcescens NBRI1213 as model organism. The defined National Botanical Research Institute's growth medium (NBRI) supplemented with 0.1% maltose, designed for quantitative estimation of phosphate accumulation was designated as PAM. Our work suggested usage of PAM for efficient qualitative screening and as a microbiological medium for preferential selection of PAOs on Petri-plates. For qualitative screening of PAOs, Toluidine blue-O dye (TBO) was supplemented in PAM, designated as PAM-TBO. Qualitative analysis of phosphate accumulated by various groups correlated well with grouping based upon quantitative analysis of PAOs, effect of carbon, nitrogen, salts, and phosphate accumulation-defective transposon mutants. For significantly increasing sample throughput, efficiency of screening PAOs was further enhanced by adaptation of PAM-TBO assay to microtiter plate based method. It is envisaged that usage of this medium will be salutary for quick screening of PAOs from environment.
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Affiliation(s)
- Vasvi Chaudhry
- Division of Plant Microbe Interactions, National Botanical Research Institute, Rana Pratap Marg, Lucknow 226 001, India
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