1
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Pan L, Yuan B, Li Q, Ouyang J, Yang J, Zhou Y, Cui C. Efficient biodegradation of chlorobenzene via monooxygenation pathways by Pandoraea sp. XJJ-1 with high potential for groundwater bioremediation. Int Microbiol 2024:10.1007/s10123-024-00544-4. [PMID: 38900217 DOI: 10.1007/s10123-024-00544-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 05/15/2024] [Accepted: 06/04/2024] [Indexed: 06/21/2024]
Abstract
Chlorobenzene (CB), extensively used in industrial processes, has emerged as a significant contaminant in soil and groundwater. The eco-friendly and cost-effective microbial remediation has been increasingly favored to address this environmental challenge. In this study, a degrading bacterium was isolated from CB-contaminated soil at a pesticide plant, identified as Pandoraea sp. XJJ-1 (CCTCC M 2021057). This strain completely degraded 100 mg·L-1 CB and showed extensive degradability across a range of pH (5.0-9.0), temperature (10-37 °C), and CB concentrations (100-600 mg·L-1). Notably, the degradation efficiency was 85.2% at 15 °C, and the strain could also degrade six other aromatic hydrocarbons, including benzene, toluene, ethylbenzene, and xylene (o-, m-, p-). The metabolic pathway of CB was inferred using ultraperformance liquid chromatography, gas chromatography-mass spectrometry, and genomic analysis. In strain XJJ-1, CB was metabolized to o-chlorophenol and 3-chloroxychol by CB monooxygenase, followed by ortho-cleavage by the action of 3-chlorocatechol 1,2-dioxygenase. Moreover, the presence of the chlorobenzene monooxygenation pathway metabolism in strain XJJ-1 is reported for the first time in Pandoraea. As a bacterium with low-temperature resistance and composite pollutant degradation capacity, strain XJJ-1 has the potential application prospects in the in-situ bioremediation of CB-contaminated sites.
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Affiliation(s)
- Lixu Pan
- State Environmental Protection Key Laboratory of Environmental Risk Assessment and Control On Chemical Process, School of Resources and Environmental Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Bo Yuan
- State Environmental Protection Key Laboratory of Environmental Risk Assessment and Control On Chemical Process, School of Resources and Environmental Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Qingqing Li
- State Environment Protection Engineering Center for Urban Soil Contamination Control and Remediation, Shanghai Academy of Environmental Sciences, Shanghai, 200233, China
| | - Ji Ouyang
- State Environmental Protection Key Laboratory of Environmental Risk Assessment and Control On Chemical Process, School of Resources and Environmental Engineering, East China University of Science and Technology, Shanghai, 200237, China
| | - Jie Yang
- State Environment Protection Engineering Center for Urban Soil Contamination Control and Remediation, Shanghai Academy of Environmental Sciences, Shanghai, 200233, China
| | - Yan Zhou
- Sinopec Fifth Construction Co., Ltd, Guangzhou, 510145, China
| | - Changzheng Cui
- State Environmental Protection Key Laboratory of Environmental Risk Assessment and Control On Chemical Process, School of Resources and Environmental Engineering, East China University of Science and Technology, Shanghai, 200237, China.
- Institute of Pollution Control and Ecological Security, Shanghai, 200092, China.
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2
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Zhang S, Baig SA, Xu X. Efficacy and mechanism of enhanced Sb(V) removal from textile wastewater using ferric flocs in aerobic biological treatment. CHEMOSPHERE 2024; 357:141920. [PMID: 38636914 DOI: 10.1016/j.chemosphere.2024.141920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/25/2024] [Accepted: 04/04/2024] [Indexed: 04/20/2024]
Abstract
Antimony contamination from textile industries has been a global environmental concern and the existing treatment technologies could not reduce Sb(V) to meet the discharge standards. To overcome this shortcoming, ferric flocs were introduced to expedite the biological process for enhanced Sb(V) removal in wastewater treatment plant (WWTP). For this purpose, a series of laboratorial-scale sequential batch reactor activated sludge processes (SBRs) were applied for Sb(V) removal with varied reactor conditions and the transformation of Fe and Sb in SBR system was investigated. Results showed a significant improvement in Sb(V) removal and the 20 mg L-1 d-1 iron ions dosage and iron loss rate was found to be only 15.2%. The influent Sb(V) concentration ranging 153-612 μg L-1 was reduced to below 50 μg L-1, and the maximum Sb(V) removal rate of the enhanced system reached about 94.3%. Furthermore, it exhibited high stability of Sb(V) removal in the face of antimonate load, Fe strike and matrix change of wastewater. Sludge total Sb determination and capacity calculation revealed decreasing in Sb adsorption capacity and desorption without fresh Fe dosage. While sludge morphology analysis demonstrated the aging and crystallization of iron hydroxides. These results verify the distinct effects of fresh iron addition and iron aging on Sb(V) removal. High-throughput gene pyrosequencing results showed that the iron addition changed microbial mechanisms and effect Fe oxidized bacterial quantity, indicating Sb(V) immobilization achieved by microbial synergistic iron oxidation. The present study successfully established a simple and efficient method for Sb(V) removal during biological treatment, and the modification of biological process by iron supplement could provide insights for real textile wastewater treatment.
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Affiliation(s)
- Shuangyu Zhang
- Department of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, People's Republic of China
| | - Shams Ali Baig
- Department of Environmental Sciences, Abdul Wali Khan University Mardan (AWKUM), Mardan, 23200, Pakistan.
| | - Xinhua Xu
- Department of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, People's Republic of China.
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3
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Feng Z, Yang Z, Yang S, Xiong H, Ning Y, Wang C, Li Y. Current status and future challenges of chlorobenzenes pollution in soil and groundwater (CBsPSG) in the twenty-first century: a bibliometric analysis. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:111748-111765. [PMID: 37843707 DOI: 10.1007/s11356-023-29956-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Accepted: 09/14/2023] [Indexed: 10/17/2023]
Abstract
The global industrial structure had undertaken significant changes since the twenty-first century, making a severe problem of chlorobenzene pollution in soil and groundwater (CBsPSG). CBsPSG receives increasing attention due to the high toxicity, persistence, and bioaccumulation of chlorobenzenes. To date, despite the gravity of this issue, no bibliometric analysis (BA) of CBsPSG does exist. This study fills up the gap by conducting a BA of 395 articles related to CBsPSG from the Web of Science Core Collection database using CiteSpace. Based on a comprehensive analysis of various aspects, including time-related, related disciplines, keywords, journal contribution, author productivity, and institute and country distribution, the status, development, and hotspots of research in the field were shown visually and statistically. Moreover, this study has also delved into the environmental behavior and remediation techniques of CBsPSG. In addition, four challenges (unequal research development, insufficient cooperation, deeply mechanism research, and developing new technologies) have been identified, and corresponding suggestions have been proposed for the future development of research in the field. Afterwards, the limitations of BA were discussed. This work provides a powerful insight into CBsPSG, enabling to quickly identify the hotspot and direction of future studies by relevant researchers.
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Affiliation(s)
- Zhi Feng
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Zhe Yang
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Sen Yang
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Hanxiang Xiong
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Yu Ning
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Changxiang Wang
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China
| | - Yilian Li
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, China.
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4
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Li H, Cao H, Li T, He Z, Zhao J, Zhang Y, Song HL. Biofilm electrode reactor coupled manganese ore substrate up-flow microbial fuel cell-constructed wetland system: High removal efficiencies of antibiotic, zinc (II), and the corresponding antibiotic resistance genes. JOURNAL OF HAZARDOUS MATERIALS 2023; 460:132394. [PMID: 37657329 DOI: 10.1016/j.jhazmat.2023.132394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2023] [Revised: 08/20/2023] [Accepted: 08/23/2023] [Indexed: 09/03/2023]
Abstract
A coupled system comprised of a biofilm electrode reactor (BER) and a manganese ore substrate microbial fuel cell-constructed wetland (MFC-CW) system was used to remove co-exposed antibiotic and Zn (II), as well as simultaneously reduce copies of antibiotic resistance genes (ARGs) in the current study. In this system, BER primarily reduced the concentrations of antibiotics and Zn (II), and the effluent was used as the input to the MFC-CW, thereby providing electricity to BER. Co-exposure to a high concentration of Zn (II) decreased the relative abundances (RAs) of ARGs in the BER effluent, whereas the remaining sub-lethal concentration of Zn (II) increased the RAs of ARGs in the MFC-CW effluent. Even though the absolute copies of ARGs in the effluents increased during co-exposure, the total number of target ARG copies in the effluent of MFC-CW was significantly lower than that of BER. Moreover, BER pre-treatment eliminated most of Zn (II), which improved the electrical power generation characteristic of the MFC-CW unit. Correspondingly, the bacterial community and the ARGs hosts were analyzed to demonstrate the mechanism. In conclusion, the coupled system demonstrates significant potential to reduce antibiotics, Zn (II) and environmental risks posed by ARGs.
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Affiliation(s)
- Hua Li
- College of Urban Construction, Nanjing Tech University, Nanjing 211816, China
| | - Haipeng Cao
- College of Urban Construction, Nanjing Tech University, Nanjing 211816, China
| | - Tao Li
- College of Urban Construction, Nanjing Tech University, Nanjing 211816, China
| | - Zhiming He
- Department of Environmental Engineering, Technical University of Denmark, Kgs Lyngby 2800, Denmark
| | - Jinhui Zhao
- College of Urban Construction, Nanjing Tech University, Nanjing 211816, China
| | - Yifeng Zhang
- Department of Environmental Engineering, Technical University of Denmark, Kgs Lyngby 2800, Denmark
| | - Hai-Liang Song
- School of Environment, Jiangsu Engineering Lab of Water and Soil Eco-remediation, Jiangsu Province Engineering Research Center of Environmental Risk Prevention and Emergency Response Technology, Nanjing Normal University, Wenyuan Road 1, Nanjing 210023, China.
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5
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Iasakov T. Evolution End Classification of tfd Gene Clusters Mediating Bacterial Degradation of 2,4-Dichlorophenoxyacetic Acid (2,4-D). Int J Mol Sci 2023; 24:14370. [PMID: 37762674 PMCID: PMC10531765 DOI: 10.3390/ijms241814370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2023] [Revised: 09/11/2023] [Accepted: 09/16/2023] [Indexed: 09/29/2023] Open
Abstract
The tfd (tfdI and tfdII) are gene clusters originally discovered in plasmid pJP4 which are involved in the bacterial degradation of 2,4-dichlorophenoxyacetic acid (2,4-D) via the ortho-cleavage pathway of chlorinated catechols. They share this activity, with respect to substituted catechols, with clusters tcb and clc. Although great effort has been devoted over nearly forty years to exploring the structural diversity of these clusters, their evolution has been poorly resolved to date, and their classification is clearly obsolete. Employing comparative genomic and phylogenetic approaches has revealed that all tfd clusters can be classified as one of four different types. The following four-type classification and new nomenclature are proposed: tfdI, tfdII, tfdIII and tfdIV(A,B,C). Horizontal gene transfer between Burkholderiales and Sphingomonadales provides phenomenal linkage between tfdI, tfdII, tfdIII and tfdIV type clusters and their mosaic nature. It is hypothesized that the evolution of tfd gene clusters proceeded within first (tcb, clc and tfdI), second (tfdII and tfdIII) and third (tfdIV(A,B,C)) evolutionary lineages, in each of which, the genes were clustered in specific combinations. Their clustering is discussed through the prism of hot spots and driving forces of various models, theories, and hypotheses of cluster and operon formation. Two hypotheses about series of gene deletions and displacements are also proposed to explain the structural variations across members of clusters tfdII and tfdIII, respectively. Taking everything into account, these findings reconstruct the phylogeny of tfd clusters, have delineated their evolutionary trajectories, and allow the contribution of various evolutionary processes to be assessed.
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Affiliation(s)
- Timur Iasakov
- Ufa Institute of Biology, Ufa Federal Research Centre, Russian Academy of Sciences, Prospekt Oktyabrya, 69, 450054 Ufa, Russia
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6
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Jiao Y, An L, Wang W, Ma J, Wu C, Wu X. Microbial communities and their roles in the Cenozoic sulfurous oil reservoirs in the Southwestern Qaidam Basin, Western China. Sci Rep 2023; 13:7988. [PMID: 37198206 DOI: 10.1038/s41598-023-33978-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 04/21/2023] [Indexed: 05/19/2023] Open
Abstract
The latest discovery of sulfurous natural gas marked a breakthrough in the Cenozoic natural gas exploration in the southwestern margin of Qaidam Basin. The 16S rRNA analyses were performed on the crude oil samples from H2S-rich reservoirs in the Yuejin, Shizigou and Huatugou profiles, to understand the sulfurous gas origin, which was also integrated with carbon and hydrogen isotopes of alkane and sulfur isotopes of H2S collected from the Yingxiongling Area. Results show that the microorganisms in samples can survive in the hypersaline reservoirs, and can be classified into multiple phyla, including Proteobacteria, Planctomycetes, Firmicutes, Bacteroidetes, and Haloanaerobiaeota. Methanogens are abundant in all of the three profiles, while sulfate-reducing bacteria are abundant in Yuejin and Huatugou profiles, contributing to the methane and H2S components in the natural gas. The carbon, hydrogen and sulfur isotopes of sulfurous natural gas in the Yingxiongling Area show that the natural gas is a mixture of coal-type gas and oil-type gas, which was primarily derived from thermal degradation, and natural gas from the Yuejin and Huatugou profiles also originated from biodegradation. The isotopic analysis agrees well with the 16S rRNA results, i.e., H2S-rich natural gas from the Cenozoic reservoirs in the southwest margin of the Qaidam Basin was primarily of thermal genesis, with microbial genesis of secondary importance.
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Affiliation(s)
- Yue Jiao
- The Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Science, Peking University, Beijing, 100871, China
| | - Liyun An
- College of Architecture and Environment, Sichuan University, Chengdu, 610065, China
| | - Wei Wang
- The No. 1 Oil Extraction Plant, Qinghai Oilfield Company, PetroChina, Haixi, 817000, Qinghai, China
| | - Jian Ma
- The Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Science, Peking University, Beijing, 100871, China
| | - Chaodong Wu
- The Laboratory of Orogenic Belts and Crustal Evolution, School of Earth and Space Science, Peking University, Beijing, 100871, China.
| | - Xiaolei Wu
- College of Engineering, Peking University, Beijing, 100871, China
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7
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Gao RF, Wang Y, Wang Y, Wang ZW, Zhang GM. Genome insights from the identification of a novel Pandoraea sputorum isolate and its characteristics. PLoS One 2022; 17:e0272435. [PMID: 35930552 PMCID: PMC9355198 DOI: 10.1371/journal.pone.0272435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 07/19/2022] [Indexed: 11/18/2022] Open
Abstract
In this study, we sequenced a bacteria isolate Pandoraea sp. 892iso isolated from a Phytophthora rubi strain which is an important plant pathogenic oomycete, identified through genome and combined the data with existing genomic data from other 28 the genus of Pandoraea species. Next, we conducted a comparative genomic analysis of the genome structure, evolutionary relationships, and pathogenic characteristics of Pandoraea species. Our results identified Pandoraea sp. 892iso as Pandoraea sputorum at both the genome and gene levels. At the genome level, we carried out phylogenetic analysis of single-copy, gene co-linearity, ANI (average nucleotide identity) and AAI (average amino acid identity) indices, rpoB similarity, MLSA phylogenetic analysis, and genome-to-genome distance calculator calculations to identify the relationship between Pandoraea sp. 892iso and P. sputorum. At the gene level, the quorum sensing genes ppnI and ppnR and the OXA-159 gene were assessed. It is speculated that Pandoraea sp. 892iso is the endosymbiont of the Oomycetes strain of Phytophthora rubi.
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Affiliation(s)
- Rui-Fang Gao
- Animal & Plant Inspection and Quarantine Technology Center of Shenzhen Customs District P.R. China, Shenzhen, China
- Shenzhen Key Laboratory for Research & Development on Detection Technology of Alien Pests, Shenzhen Academy of Inspection and Quarantine, Shenzhen, China
- * E-mail:
| | - Ying Wang
- Animal & Plant Inspection and Quarantine Technology Center of Shenzhen Customs District P.R. China, Shenzhen, China
- Shenzhen Key Laboratory for Research & Development on Detection Technology of Alien Pests, Shenzhen Academy of Inspection and Quarantine, Shenzhen, China
| | - Ying Wang
- Animal & Plant Inspection and Quarantine Technology Center of Shenzhen Customs District P.R. China, Shenzhen, China
- Shenzhen Key Laboratory for Research & Development on Detection Technology of Alien Pests, Shenzhen Academy of Inspection and Quarantine, Shenzhen, China
| | | | - Gui-Ming Zhang
- Animal & Plant Inspection and Quarantine Technology Center of Shenzhen Customs District P.R. China, Shenzhen, China
- Shenzhen Key Laboratory for Research & Development on Detection Technology of Alien Pests, Shenzhen Academy of Inspection and Quarantine, Shenzhen, China
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8
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Alghuthaymi MA, Awad AM, Hassan HA. Isolation and Characterization a Novel Catabolic Gene Cluster Involved in Chlorobenzene Degradation in Haloalkaliphilic Alcanivorax sp. HA03. BIOLOGY 2022; 11:biology11050724. [PMID: 35625452 PMCID: PMC9138330 DOI: 10.3390/biology11050724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 05/05/2022] [Accepted: 05/06/2022] [Indexed: 11/16/2022]
Abstract
Chlorobenzene (CB) poses a serious risk to human health and the environment, and because of its low degradation rate by microorganisms, it persists in the environment. Some bacterial strains can use CB as growth substrates and their degradative pathways have evolved; very little is known about these pathways and the enzymes for CB degradation in high pH and salinity environments. Alcanivorax sp. HA03 was isolated from the extremely saline and alkaline site. HA03 has the capability to degrade benzene, toluene and chlorobenzene (CB). CB catabolic genes were isolated from HA03, which have a complete gene cluster comprising α and β subunits, ferredoxin and ferredoxin reductase (CBA1A2A3A4), as well as one gene-encoding enzyme for chlorocatechol 1,2-dioxygenase (CC12DOs). Based on the deduced amino acid sequence homology, the gene cluster was thought to be responsible for the upper and lower catabolic pathways of CB degradation. The CBA1A2A3A4 genes probably encoding a chlorobenzene dioxygenase was confirmed by expression during the growth on CB by RT-PCR. Heterologous expression revealed that CBA1A2A3A4 exhibited activity for CB transformation into 3-chlorocatechol, while CC12DOs catalyze 3-chlorocatechol, transforming it into 2-chloromucounate. SDS-PAGE analysis indicated that the sizes of CbA1 and (CC12DOs) gene products were 51.8, 27.5 kDa, respectively. Thus, Alcanivorax sp. HA03 constitutes the first bacterial strain described in the metabolic pathway of CB degradation under high pH and salinity conditions. This finding may have obvious potential for the bioremediation of CB in both highly saline and alkaline contaminated sites.
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Affiliation(s)
- Mousa A. Alghuthaymi
- Biology Department, Science and Humanities College, Shaqra University, Alquwayiyah 11726, Saudi Arabia;
| | - Ahmed M. Awad
- Department of Environmental Biotechnology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Sadat City 32897, Egypt;
| | - Hamdy A. Hassan
- Biology Department, Science and Humanities College, Shaqra University, Alquwayiyah 11726, Saudi Arabia;
- Department of Environmental Biotechnology, Genetic Engineering and Biotechnology Research Institute, University of Sadat City, Sadat City 32897, Egypt;
- Correspondence:
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9
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Jog KV, Hess KZ, Field JA, Krzmarzick MJ, Sierra-Alvarez R. Aerobic biodegradation of emerging azole contaminants by return activated sludge and enrichment cultures. JOURNAL OF HAZARDOUS MATERIALS 2021; 417:126151. [PMID: 34229401 DOI: 10.1016/j.jhazmat.2021.126151] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 05/10/2021] [Accepted: 05/14/2021] [Indexed: 06/13/2023]
Abstract
Azoles are an emerging class of contaminants with a growing ubiquitous presence in the environment. This study investigates the aerobic microbial degradation of four azoles, pyrazole (PA), 1,2,4-triazole (TA), benzotriazole (BTA) and 5-methylbenzotriazole (5-MBTA), with return activated sludge and microbial enrichment cultures. Slow degradation of PA was observed in the presence of glucose and NH4+ with a peak degradation rate of 0.5 mg d-1 gVSS-1. TA was found to be highly persistent, with no significant degradation observed in 6-8 months under any incubation condition. In contrast, the benzotriazoles were readily degraded at faster rates in all incubation conditions. The degradation rates observed for BTA and 5-MBTA, when provided as the sole substrates, were 8.1 and 16.5 mg d-1 gVSS-1, respectively. Two enrichment cultures, one degrading BTA and the other degrading 5-MBTA, were developed from the activated sludge. Mass balance studies revealed complete mineralization of 5-MBTA and partial breakdown of BTA by the enrichment cultures. Nocardioides sp. and Pandoraea pnomenusa were the most abundant bacteria in the BTA and 5-MBTA degrading enrichment cultures, respectively. The research shows large differences in the biodegradability of various azoles, ranging from complete mineralization of 5-MBTA to complete persistence for TA.
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Affiliation(s)
- Kalyani V Jog
- Department of Chemical & Environmental Engineering, University of Arizona, Tucson, AZ 85721-0011, USA
| | - Kendra Z Hess
- School of Civil and Environmental Engineering, Oklahoma State University, Stillwater, OK 74078, USA
| | - Jim A Field
- Department of Chemical & Environmental Engineering, University of Arizona, Tucson, AZ 85721-0011, USA
| | - Mark J Krzmarzick
- School of Civil and Environmental Engineering, Oklahoma State University, Stillwater, OK 74078, USA
| | - Reyes Sierra-Alvarez
- Department of Chemical & Environmental Engineering, University of Arizona, Tucson, AZ 85721-0011, USA.
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10
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Zhao Z, Zhang G, Zhang Y, Dou M, Li Y. Fe 3O 4 accelerates tetracycline degradation during anaerobic digestion: Synergistic role of adsorption and microbial metabolism. WATER RESEARCH 2020; 185:116225. [PMID: 32736283 DOI: 10.1016/j.watres.2020.116225] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2020] [Revised: 07/11/2020] [Accepted: 07/23/2020] [Indexed: 06/11/2023]
Abstract
Antibiotics contaminants, for example, tetracycline (TC) in the environment have attracted extensive attention around the world, and appropriate treatments for such contaminants are urgently required. In this study, five groups of anaerobic reactors supplemented with different amounts of Fe3O4 were operated periodically to investigate their performance on TC removal. The results showed that Fe3O4 effectively promoted TC removal. Compared with the control reactor, the TC removal efficiency was increased by 7.3% when co-digested with glucose, and increased by 40.4% when mono TC was digested in reactors with 5.0 g/L Fe3O4. Further analysis indicated that the probable mechanism of Fe3O4 promoting TC removal was through TC being adsorbed from the liquid onto Fe3O4, making TC more available for microbes to be biodegraded. Microbial community analysis indicated that the bacteria (Klebsiella, Pseudomonas, and Escherichia) related to TC removal were enriched, which meant more pathways for TC removal were available following the addition of Fe3O4. In addition, in the Fe3O4-supplemented reactors, syntrophic metabolism (between Desulfovibrio and Methanobacterium, Azonexus and Methanobacterium) were possibly established, which played an important role in improving TC removal and CH4 production. The electron transport system data further confirmed these results. The functional gene classification for Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis demonstrated that the dominant functions enhanced by Fe3O4 supplementation was microbial metabolic activities.
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Affiliation(s)
- Zisheng Zhao
- School of Ecology and Environment, Zhengzhou University, Kexue Road 100, Zhengzhou 450001, China
| | - Guangyi Zhang
- School of Water Conservancy Science and Engineering, Zhengzhou University, Kexue Road 100, Zhengzhou 450001, China
| | - Yaobin Zhang
- Key Laboratory of Industrial Ecology and Envronmental Engineering (Ministry of Education), Ministry of Education, School of Environmental Science and Technology, Dalian University of Technology, Dalian 116024, China
| | - Ming Dou
- School of Ecology and Environment, Zhengzhou University, Kexue Road 100, Zhengzhou 450001, China
| | - Yang Li
- School of Ocean Science and Technology, Dalian University of Technology, Panjin 124221, China.
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11
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Li T, Li H, Li C. A review and perspective of recent research in biological treatment applied in removal of chlorinated volatile organic compounds from waste air. CHEMOSPHERE 2020; 250:126338. [PMID: 32126329 DOI: 10.1016/j.chemosphere.2020.126338] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2019] [Revised: 02/20/2020] [Accepted: 02/24/2020] [Indexed: 06/10/2023]
Abstract
Chlorinated volatile organic compounds (Cl-VOCs) waste air is a kind of typical recalcitrant organic compounds, which poses a great threat to the ecological environment and human health. At present, the biotechnology is considered as a potential strategy for the Cl-VOCs removal due to the advantages of low energy consumption and less possibility of secondary pollution. This work summarizes the recent researches on strains, bioreactors and technology integration. The dominant pure strains for biodegradation of Cl-VOCs are first outlined with a special focus on the co-metabolism of multi-components. It then summarizes two bioreactors (optimized airlift reactor (ALR) and two-phase partitioning bioreactor (TPPB)) and strategy (addition of surfactant) for improvement of biotrickling filter (BTF), which are benefit to achieve the mass transfer enhancement in the removal of hydrophobic Cl-VOCs from waste air. After that, the integration technologies, such as magnetic field (MF)-BTF, non-thermal plasma (NTP)/ultraviolet light (UV)-BTF, and microbial electrolytic cells (MEC), are elucidated, which provide opportunities for complete mineralization of Cl-VOCs in a more efficient, energy-saving and economical way. Finally, current challenges and a perspective of future research on biotechnology for Cl-VOCs removal are thoroughly discussed.
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Affiliation(s)
- Tong Li
- National-Local Joint Engineering Laboratory for Energy Conservation in Chemical Process Integration and Resources Utilization, Tianjin Key Laboratory of Chemical Process Safety, School of Chemical Engineering and Technology, Hebei University of Technology, 8 Guangrong Road, Tianjin, 300000, China
| | - Hao Li
- National-Local Joint Engineering Laboratory for Energy Conservation in Chemical Process Integration and Resources Utilization, Tianjin Key Laboratory of Chemical Process Safety, School of Chemical Engineering and Technology, Hebei University of Technology, 8 Guangrong Road, Tianjin, 300000, China.
| | - Chunli Li
- National-Local Joint Engineering Laboratory for Energy Conservation in Chemical Process Integration and Resources Utilization, Tianjin Key Laboratory of Chemical Process Safety, School of Chemical Engineering and Technology, Hebei University of Technology, 8 Guangrong Road, Tianjin, 300000, China
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Chow SJ, Lorah MM, Wadhawan AR, Durant ND, Bouwer EJ. Sequential biodegradation of 1,2,4-trichlorobenzene at oxic-anoxic groundwater interfaces in model laboratory columns. JOURNAL OF CONTAMINANT HYDROLOGY 2020; 231:103639. [PMID: 32283437 DOI: 10.7281/t1/i3ilxo] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Revised: 03/16/2020] [Accepted: 03/23/2020] [Indexed: 05/24/2023]
Abstract
Halogenated organic solvents such as chlorobenzenes (CBs) are frequent groundwater contaminants due to legacy spills. When contaminated anaerobic groundwater discharges into surface water through wetlands and other transition zones, aeration can occur from various physical and biological processes at shallow depths, resulting in oxic-anoxic interfaces (OAIs). This study investigated the potential for 1,2,4-trichlorobenzene (1,2,4-TCB) biodegradation at OAIs. A novel upflow column system was developed to create stable anaerobic and aerobic zones, simulating a natural groundwater OAI. Two columns containing (1) sand and (2) a mixture of wetland sediment and sand were operated continuously for 295 days with varied doses of 0.14-1.4 mM sodium lactate (NaLac) as a model electron donor. Both column matrices supported anaerobic reductive dechlorination and aerobic degradation of 1,2,4-TCB spatially separated between anaerobic and aerobic zones. Reductive dechlorination produced a mixture of di- and monochlorobenzene daughter products, with estimated zero-order dechlorination rates up to 31.3 μM/h. Aerobic CB degradation, limited by available dissolved oxygen, occurred for 1,2,4-TCB and all dechlorinated daughter products. Initial reductive dechlorination did not enhance the overall observed extent or rate of subsequent aerobic CB degradation. Increasing NaLac dose increased the extent of reductive dechlorination, but suppressed aerobic CB degradation at 1.4 mM NaLac due to increased oxygen demand. 16S-rRNA sequencing of biofilm microbial communities revealed strong stratification of functional anaerobic and aerobic organisms between redox zones including the sole putative reductive dechlorinator detected in the columns, Dehalobacter. The sediment mixture column supported enhanced reductive dechlorination compared to the sand column at all tested NaLac doses and growth of Dehalobacter populations up to 4.1 × 108 copies/g (51% relative abundance), highlighting the potential benefit of sediments in reductive dechlorination processes. Results from these model systems suggest both substantial anaerobic and aerobic CB degradation can co-occur along the OAI at contaminated sites where bioavailable electron donors and oxygen are both present.
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Affiliation(s)
- Steven J Chow
- Department of Environmental Health and Engineering, Johns Hopkins University, Address: 3400 North Charles Street, Baltimore, MD 21218, United States
| | - Michelle M Lorah
- U.S. Geological Survey, MD-DE-DC Water Science Center, Address: 5522 Research Park Drive, Baltimore, MD 21228, United States.
| | - Amar R Wadhawan
- Arcadis U.S. Inc., Address: 7550 Teague Road Suite 210, Hanover, MD 21076, United States
| | - Neal D Durant
- Geosyntec Consultants, Address: 10211 Wincopin Cir Floor 4, Columbia, MD 21044, United States
| | - Edward J Bouwer
- Department of Environmental Health and Engineering, Johns Hopkins University, Address: 3400 North Charles Street, Baltimore, MD 21218, United States
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Chow SJ, Lorah MM, Wadhawan AR, Durant ND, Bouwer EJ. Sequential biodegradation of 1,2,4-trichlorobenzene at oxic-anoxic groundwater interfaces in model laboratory columns. JOURNAL OF CONTAMINANT HYDROLOGY 2020; 231:103639. [PMID: 32283437 PMCID: PMC7217665 DOI: 10.1016/j.jconhyd.2020.103639] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2019] [Revised: 03/16/2020] [Accepted: 03/23/2020] [Indexed: 05/09/2023]
Abstract
Halogenated organic solvents such as chlorobenzenes (CBs) are frequent groundwater contaminants due to legacy spills. When contaminated anaerobic groundwater discharges into surface water through wetlands and other transition zones, aeration can occur from various physical and biological processes at shallow depths, resulting in oxic-anoxic interfaces (OAIs). This study investigated the potential for 1,2,4-trichlorobenzene (1,2,4-TCB) biodegradation at OAIs. A novel upflow column system was developed to create stable anaerobic and aerobic zones, simulating a natural groundwater OAI. Two columns containing (1) sand and (2) a mixture of wetland sediment and sand were operated continuously for 295 days with varied doses of 0.14-1.4 mM sodium lactate (NaLac) as a model electron donor. Both column matrices supported anaerobic reductive dechlorination and aerobic degradation of 1,2,4-TCB spatially separated between anaerobic and aerobic zones. Reductive dechlorination produced a mixture of di- and monochlorobenzene daughter products, with estimated zero-order dechlorination rates up to 31.3 μM/h. Aerobic CB degradation, limited by available dissolved oxygen, occurred for 1,2,4-TCB and all dechlorinated daughter products. Initial reductive dechlorination did not enhance the overall observed extent or rate of subsequent aerobic CB degradation. Increasing NaLac dose increased the extent of reductive dechlorination, but suppressed aerobic CB degradation at 1.4 mM NaLac due to increased oxygen demand. 16S-rRNA sequencing of biofilm microbial communities revealed strong stratification of functional anaerobic and aerobic organisms between redox zones including the sole putative reductive dechlorinator detected in the columns, Dehalobacter. The sediment mixture column supported enhanced reductive dechlorination compared to the sand column at all tested NaLac doses and growth of Dehalobacter populations up to 4.1 × 108 copies/g (51% relative abundance), highlighting the potential benefit of sediments in reductive dechlorination processes. Results from these model systems suggest both substantial anaerobic and aerobic CB degradation can co-occur along the OAI at contaminated sites where bioavailable electron donors and oxygen are both present.
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Affiliation(s)
- Steven J Chow
- Department of Environmental Health and Engineering, Johns Hopkins University, Address: 3400 North Charles Street, Baltimore, MD 21218, United States
| | - Michelle M Lorah
- U.S. Geological Survey, MD-DE-DC Water Science Center, Address: 5522 Research Park Drive, Baltimore, MD 21228, United States.
| | - Amar R Wadhawan
- Arcadis U.S. Inc., Address: 7550 Teague Road Suite 210, Hanover, MD 21076, United States
| | - Neal D Durant
- Geosyntec Consultants, Address: 10211 Wincopin Cir Floor 4, Columbia, MD 21044, United States
| | - Edward J Bouwer
- Department of Environmental Health and Engineering, Johns Hopkins University, Address: 3400 North Charles Street, Baltimore, MD 21218, United States
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Chao HJ, Chen YY, Wu J, Yan DZ, Zhou NY. Complete Genome Sequence of a Chlorobenzene Degrader, Pandoraea pnomenusa MCB032. Curr Microbiol 2019; 76:1235-1237. [PMID: 31432211 DOI: 10.1007/s00284-019-01760-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2019] [Accepted: 08/13/2019] [Indexed: 10/26/2022]
Abstract
Chlorobenzenes are ubiquitously distributed, highly persistent, and toxic environmental contaminants. Pandoraea pnomenusa MCB032 was isolated as a new dominant chlorobenzene-utilizing strain from a functionally stable bioreactor during the treatment of chlorobenzenes when strain Burkholderia sp. JS150 disappeared. In study, we report the complete genome sequence of strain MCB032 which consists of a circular chromosome and three plasmids, which are ~ 6 Mb in length with 5450 open reading frames-12 encoding rRNAs and 77 encoding tRNAs. We further identified 17 putative genes encoding the enzymes involved in the methyl-accepting chemotaxis proteins in sensing chemical gradients during chemotaxis. The annotated complete genome sequence of this strain will provide genetic insights into the degradation of chlorinated aromatic compounds. The information will empower the elucidation of chlorobenzene affinity hierarchy and species succession in the bioreactor.
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Affiliation(s)
- Hong-Jun Chao
- School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, China.,Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China
| | - Yuan-Yuan Chen
- School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, China
| | - Jing Wu
- School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, China
| | - Da-Zhong Yan
- School of Biology and Pharmaceutical Engineering, Wuhan Polytechnic University, Wuhan, China.
| | - Ning-Yi Zhou
- Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, China.,State Key Laboratory of Microbial Metabolism and School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, China
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Zhang S, Ying Z, You J, Ye J, Cheng Z, Chen D, Chen J. Superior performance and mechanism of chlorobenzene degradation by a novel bacterium. RSC Adv 2019; 9:15004-15012. [PMID: 35516324 PMCID: PMC9064227 DOI: 10.1039/c9ra01229j] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2019] [Accepted: 05/05/2019] [Indexed: 01/08/2023] Open
Abstract
A newly isolated strain was identified as Ochrobactrum sp. by 16S rRNA sequence analysis and named as ZJUTCB-1.
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Affiliation(s)
- Shihan Zhang
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province
| | - Zanyun Ying
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
| | - Juping You
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
| | - Jiexu Ye
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province
| | - Zhuowei Cheng
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province
| | - Dongzhi Chen
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province
| | - Jianmeng Chen
- College of Environment
- Zhejiang University of Technology
- Hangzhou
- China
- Key Laboratory of Microbial Technology for Industrial Pollution Control of Zhejiang Province
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Lim YL, Ee R, How KY, Lee SK, Yong D, Tee KK, Yin WF, Chan KG. Complete genome sequencing of Pandoraea pnomenusa RB38 and Molecular Characterization of Its N-acyl homoserine lactone synthase gene ppnI. PeerJ 2015; 3:e1225. [PMID: 26336650 PMCID: PMC4556143 DOI: 10.7717/peerj.1225] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Accepted: 08/11/2015] [Indexed: 01/05/2023] Open
Abstract
In this study, we sequenced the genome of Pandoraea pnomenusa RB38 using Pacific Biosciences RSII (PacBio) Single Molecule Real Time (SMRT) sequencing technology. A pair of cognate luxI/R homologs was identified where the luxI homolog, ppnI, was found adjacent to a luxR homolog, ppnR1. An additional orphan luxR homolog, ppnR2, was also discovered. Multiple sequence alignment and phylogenetic analysis revealed that ppnI is an N-acyl homoserine lactone (AHL) synthase gene that is distinct from those of the nearest phylogenetic neighbor viz. Burkholderia spp. High resolution tandem mass spectrometry (LC-MS/MS) analysis showed that Escherichia coli BL21 harboring ppnI produced a similar AHL profile (N-octanoylhomoserine lactone, C8-HSL) as P. pnomenusa RB38, the wild-type donor strain, confirming that PpnI directed the synthesis of AHL in P. pnomenusa RB38. To our knowledge, this is the first documentation of the luxI/R homologs of the genus Pandoraea.
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Affiliation(s)
- Yan-Lue Lim
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
| | - Robson Ee
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
| | - Kah-Yan How
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
| | - Siew-Kim Lee
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
| | - Delicia Yong
- Department of Medicine, Faculty of Medicine, University of Malaya , Kuala Lumpur , Malaysia
| | - Kok Keng Tee
- Department of Medicine, Faculty of Medicine, University of Malaya , Kuala Lumpur , Malaysia
| | - Wai-Fong Yin
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
| | - Kok-Gan Chan
- Division of Genetics and Molecular Biology, Faculty of Science, Institute of Biological Sciences, University of Malaya , Kuala Lumpur , Malaysia
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Baboshin MA, Golovleva LA. Aerobic bacterial degradation of polycyclic aromatic hydrocarbons (PAHs) and its kinetic aspects. Microbiology (Reading) 2012. [DOI: 10.1134/s0026261712060021] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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Li G, Park S, Kang DW, Krajmalnik-Brown R, Rittmann BE. 2,4,5-Trichlorophenol degradation using a novel TiO2-coated biofilm carrier: roles of adsorption, photocatalysis, and biodegradation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2011; 45:8359-8367. [PMID: 21861477 DOI: 10.1021/es2016523] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Intimate coupling of photocatalysis and biodegradation (ICPB) offers potential for degrading biorecalcitrant and toxic organic compounds. This study reports on a novel sponge-type, TiO(2)-coated biofilm carrier that showed significant adherence of TiO(2) and ability to accumulate biomass in its interior. This carrier was tested for ICPB in a continuous-flow photocatalytic circulating-bed biofilm reactor (PCBBR) to mineralize 2,4,5-trichlorophenol (TCP), which is biorecalcitrant. Four mechanisms possibly acting in ICPB were tested separately: TCP adsorption to the carrier, UV photolysis, UV photocatalysis, and biodegradation by biofilm inside the carrier. The carrier exhibited strong TCP adsorption that followed a Freundlich isotherm with an exponent near 2. Whereas UV photolysis was negligible, photocatalysis produced TCP-degradation products that could be mineralized, and the strong adsorption of TCP to the carrier enhanced biodegradation by relieving toxicity. Validating the ICPB concept, biofilm was protected inside the carriers, although biomass originally on the outer surface of the carriers was eliminated. ICPB significantly lowered the diversity of the bacterial community, but five genera known to biodegrade chlorinated phenols (Ralstonia, Bradyrhizobium, Methylobacterium, Cupriavidus, and Pandoraea) were markedly enriched.
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Affiliation(s)
- Guozheng Li
- Swette Center for Environmental Biotechnology, Biodesign Institute at Arizona State University , 1001 South McAllister Avenue, Tempe, Arizona 85287-5701, United States
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Sahin N, Tani A, Kotan R, Sedláček I, Kimbara K, Tamer AU. Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture. Int J Syst Evol Microbiol 2011; 61:2247-2253. [DOI: 10.1099/ijs.0.026138-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Five isolates, designated TA2, TA4, TA25T, KOxT and NS15T were isolated in previous studies by enrichment in mineral medium with potassium oxalate as the sole carbon source and were characterized using a polyphasic approach. The isolates were Gram-reaction-negative, aerobic, non-spore-forming rods. Phylogenetic analyses based on 16S rRNA and DNA gyrase B subunit (gyrB) gene sequences confirmed that the isolates belonged to the genus Pandoraea and were most closely related to Pandoraea sputorum and Pandoraea pnomenusa (97.2–99.7 % 16S rRNA gene sequence similarity). The isolates could be differentiated from their closest relatives on the basis of several phenotypic characteristics. The major cellular fatty acid profiles of the isolates comprised C16 : 0, C18 : 1ω7c, C17 : 0 cyclo and summed feature 3 (C16 : 1ω7c and/or iso-C15 : 0 2-OH). On the basis of DNA–DNA hybridization studies and phylogenetic analyses, the isolates represent three novel species within the genus Pandoraea, for which the names Pandoraea oxalativorans sp. nov. (TA25T = NBRC 106091T = CCM 7677T = DSM 23570T), Pandoraea faecigallinarum sp. nov. (KOxT = NBRC 106092T = CCM 2766T = DSM 23572T) and Pandoraea vervacti sp. nov. (NS15T = NBRC 106088T = CCM 7667T = DSM 23571T) are proposed.
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Affiliation(s)
| | - Akio Tani
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
| | - Recep Kotan
- Department of Plant Protection, Faculty of Agriculture, Ataturk University, Erzurum, Turkey
| | - Ivo Sedláček
- Czech Collection of Microorganisms, Department of Experimental Biology, Faculty of Science, Masaryk University, Brno, Czech Republic
| | - Kazuhide Kimbara
- Institute of Plant Science and Resources, Okayama University, Okayama, Japan
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