Adsorption of proline, hydroxyproline and glycine on anatase (001) surface: a first-principle study

Interaction of biomolecules with anatase, rutile and amorphous TiO2 surfaces: A molecular dynamics study

The adhesion of biomolecules to dental and orthopedic implants is a fundamental step in the process of osseointegration. Short peptide motifs, such as RGD or KRSR, carried by extracellular matrix proteins or coated onto implant surfaces, accelerate cell adhesion and tissue formation. For this reason, understanding the binding mechanisms of adhesive peptides to oxidized surfaces of titanium implants is of paramount importance. We performed molecular dynamics simulations to compare the adhesion properties of 6 peptides, including the tripeptide RGD, its variants KGD and LGD, as well as the tetrapeptide KRSR, its variant LRSR and its truncated version RSR, on anatase, rutile, and amorphous titanium dioxide (TiO2) surfaces. The migration of these molecules from the water phase to the surface was simulated in an aqueous environment. Based on these simulations, we calculated the residence time of each peptide bound to the three different TiO2 structures. It was found that the presence of an N-terminal lysine or arginine amino acid residue resulted in more efficient surface binding. A pulling simulation was performed to detach the adhered molecules. The maximum pulling force and the binding energy were determined from the results of these simulations. The tri- and tetrapeptides had slightly greater adhesion affinity to the amorphous and anatase structure than to rutile in general, however specific surface and peptide binding characters could be detected. The binding energies obtained from our simulations allowed us to rank the adhesion strengths of the studied peptides.

Novel cubical Ag(NP) decorated titanium dioxide supported bentonite thin film in the efficient removal of bisphenol A using visible light

The persistent endocrine-disrupting chemical bisphenol A is posing serious health concerns; hence, it is known to be an emerging and potential water contaminant. The present investigation aims to synthesize novel cubical Ag(NP) decorated titanium dioxide-supported bentonite (Ag/TiO₂@Clay) nanocomposite using a novel synthetic process. The nanocomposite materials were characterized by several analytical methods viz., transmission electron microscopy (TEM), X-ray diffraction (XRD) analyses, energy-dispersive X-ray spectroscopy (EDX), atomic force microscopy (AFM), scanning electron microscopy (SEM), Brunauer-Emmett-Teller (BET) and diffuse reflectance spectroscopy (DRS). Further, the photocatalytic removal of bisphenol A was conducted utilizing the thin film catalyst under the LED (light emitting diode; visible light) and UV-A (ultra violet-A) light sources. The parametric studies solution pH (6.0-12.0), pollutant concentrations (1.0-20.0 mg/L), and the interaction of several scavengers and co-existing ions are studied extensively to demonstrate the insights of the removal mechanism. The mineralization of bisphenol A and repeated use of the thin film catalyst showed the potential usage of photocatalysts in the devised large-scale operations. Similarly, the natural matrix treatment was performed to evaluate the suitability of the process for real implications.

Adsorption and Mechanism of Glycine on the Anatase with Exposed (001) and (101) Facets

As a widely existing mineral types on Earth, semiconductor minerals play an important role in the origin of life and the material geochemical cycle. The first step of peptide formation is amino acid adsorption on the mineral surface, but the role and mechanism of different crystal facets of semiconductor minerals are not well understood. Anatase (TiO2) with exposed (001) facets was synthesized by a hydrothermal method, and then analyzed and compared with the purchased ordinary anatase (TiO2) for the adsorption of glycine, the simplest amino acid. XRD, SEM and TEM results show that the hydrothermally synthesized anatase (TiO2) has a good anatase crystal form, which is micro-nano-scale flake particles and mainly composed of (001) facets. The results of HPLC used in the adsorption experiment showed that under optimal conditions (pH 5 to 6, an adsorption time of 24 h, and an initial concentration of 0.09 mol/L), the adsorption quantity of glycine on anatase (TiO2) with exposed (001) facets may reach 10 mg/m2, which is larger than that for ordinary anatase (TiO2) with exposed (101) facets. Based on a combination of various characterizations and simulation calculations, the results proved that anatase can activate thermodynamically stable γ-glycine to β-glycine. The adsorption of glycine on anatase (TiO2) has two forms, one is the zwitterionic form in which the carboxyl group forms a bridge structure with two Ti atoms connected by surface bridging oxygen, and the dissociated form is in which the amino group forms a bond with the surface Ti atom. Among these, glycine is mainly adsorbed to anatase by dissociative molecules on the anatase (TiO2) with exposed (001) facets and by zwitterion adsorption on the anatase (TiO2) with exposed (101) facets. This research elucidates the conditions and mechanism of amino acid adsorption by semiconductor minerals in weak acidic environment, which is similar to the environmental pH that was beneficial to the formation of life on the early Earth. Therefore, these can provide a reference for the further study of the role of semiconductor minerals in the adsorption and polymerization of small biomolecules in the origin of life.

Interaction of KRSR Peptide with Titanium Dioxide Anatase (100) Surface: A Molecular Dynamics Simulation Study

Due to its tensile strength and excellent biocompatibility, titanium (Ti) is commonly used as an implant material in medicine and dentistry. The success of dental implants depends on the formation of a contact between the oxidized surface of Ti implant and the surrounding bone tissue. The adsorption of proteins and peptides to the implant surface allows the bone-forming osteoblast cells to adhere to such modified surfaces. Recently, it has been observed that tetrapeptide KRSR (Lys-Arg-Ser-Arg) functionalization could promote osteoblast adhesion to implant surfaces. This may facilitate the establishment of an efficient bone-to implant contact and improve implant stability during the healing process. GROMACS, a molecular dynamics software package was used to perform a 200 ns simulation of adsorption of the KRSR peptide to the TiO₂ (anatase) surface in an aqueous environment. The molecule conformations were mapped with Replica Exchange Molecular Dynamics (REMD) simulations to assess the possible peptide conformations on the anatase surface, and the umbrella sampling method was used to calculate the binding energy of the most common conformation. The simulations have shown that the KRSR peptide migrates and attaches to the surface in a stable position. The dominant amino acid residue interacting with the TiO₂ surface was the N-terminal charged lysine (K) residue. REMD indicated that there is a distinct conformation that is taken by the KRSR peptide. In this conformation the surface interacts only with the lysine residue while the ser (S) and arg (R) residues interact with water molecules farther from the surface. The binding free energy of the most common conformation of KRSR peptide to the anatase (100) surface was ΔG = −8.817 kcal/mol. Our result suggests that the N-terminal lysine residue plays an important role in the adhesion of KRSR to the TiO₂ surface and may influence the osseointegration of dental implants.

Surface force analysis of glycine adsorption on different crystal surfaces of titanium dioxide (TiO2)

Surface force analysis with atomic force microscope (AFM) in which a single amino acid residue was mounted on the tip apex of AFM probe was carried out for the first time at the molecular level on titanium dioxide (TiO₂) as a representative mineral surface for prebiotic chemical evolution reactions. The force analyses on surfaces with three different crystal orientations revealed that the TiO₂ (110) surface has unique characteristics for adsorbing glycine molecules showing different features compared to those on TiO₂ (001) and (100). To examine this difference, we investigated thermal desorption spectroscopy (TDS) and the interaction between the PEG cross-linker and the three TiO₂ surfaces. Our data suggest that the different single crystal surfaces would provide different chemical evolution field for amino acid molecules.