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Mendes R, da Mata V, Haiduke R. An electronic structure investigation of excited state intramolecular proton transfer in amino-benzazole derivatives: relative energies and electron density descriptors. J Photochem Photobiol A Chem 2023. [DOI: 10.1016/j.jphotochem.2023.114738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Zhang N, Liu D, Chen W, Liu X, Yan J. Solvent effect on excited-state intramolecular proton transfer process based on ‘naked’ diazaborepins. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112898] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Abstract
Organophosphorus compounds are organic compounds widely employed in agriculture as well as in chemical weapons. The use in agriculture is due to their insecticidal properties. However, in chemical warfare, the use of organophosphorus is associated with acetylcholinesterase inhibition, which promotes the cholinergic syndromes. In this line, the fast detection of this class of compound is crucial for the determination of environmental exposure. This improved detection will naturally allow for more prompt courses of treatment depending on the contaminant findings. In this perspective, the dipyrrinone oxime (1) was employed for the detection of organophosphorus compounds that are employed as nerve agents, such as cyclosarin, sarin, soman, diethyl chlorophosphate, diisopropylfluorophosphate, 2-(dimethylamino)ethyl N,N-dimethylphosphoramidofluoridate, O-ethyl-S-[2-(diethylamino)ethyl]methylphosphonothioate, O-ethyl-S-[2(diisopropylamino)ethyl] methylphosphonothioate, and O,O-diethyl-S-[2-(diethylamino)ethyl] phosphorothioate, through fluorescent emission. The thermodynamics and kinetic parameters as well as spectroscopic properties of the complexes formed for 1 and all organophosphorus compounds previously cited were investigated by means of theoretical calculations. From our findings, only the diethyl chlorophosphate, 2-(dimethylamino)ethyl N,N-dimethylphosphoramidofluoridate, and O,O-diethyl-S-[2-(diethylamino)ethyl] phosphorothioate emitted fluorescence in the hexane, toluene, chloroform, dichloromethane, methanol, acetonitrile, water, and dimethyl sulfoxide solvents. The study of the absorption wavelength with the most polar solvent showed higher values compared to apolar solvents. In the same solvent, for instance, soman in hexane showed the lowest absorption wavelength value, 324.5 nm, and DCP the highest value, 330.8 nm. This behavior was observed in other tested solvents. The thermodynamic parameters indicate negative Gibbs free energy (ΔG) values for the O-ethyl-S-[2(diisopropylamino)ethyl] methylphosphonothioate with 1 reaction. On the other hand, the sarin and cyclosarin revealed the lowest Gibbs free energy (ΔG‡) values, being kinetically favorable and presenting more reactivity.
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Lino JBDR, Ramalho TC. Exploring Through-Space Spin-Spin Couplings for Quantum Information Processing: Facing the Challenge of Coherence Time and Control Quantum States. J Phys Chem A 2019; 123:1372-1379. [PMID: 30673241 DOI: 10.1021/acs.jpca.8b09425] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Nuclear magnetic resonance (NMR) is a powerful tool for studying quantum information processing (QIP). Recently quantum technologies have been proposed to overcome the challenges in large-scale NMR QIP. Furthermore, computational chemistry can promote its improvement. Nuclear spins-1/2 are natural qubits and have been used in most NMR quantum computation experiments. However, molecules that enable many qubits NMR QIP implementations should meet some requirements regarding their spectroscopic properties. Exceptionally large through-space (TS) P-P spin-spin coupling constants (SSCC or J) observed in 1,8-diphosphanaphthalenes (PPN) and in naphtho[1,8- cd]-1,2-dithiole phenylphosphines (NTP) were proposed and investigated to provide more accurate control within large-scale NMR QIP. Spectroscopic properties of PPN and NTP derivatives were explored by theoretical strategies using locally dense basis sets (LDBS). 31P chemical shifts (δ) calculated at the B3LYP/aug-cc-pVTZ-J level and TS P-P SSCCs at the PBE1PBE/pcJ-2 (LDBS-1) level are very close to the experimental data for the PPN molecule. Differently, for the NTP dimer, PBE1PBE/pcJ-2 (LDBS-2) predicts more accurate 31P δ, whereas PBE1PBE/Def2-TZVP (LDBS-1) forecasts more accurate TS P-P SSCCs. From our results, PPNo-F, PPNo-ethyl, and PPNo-NH2 were the best candidates for NMR QIP, in which the large TS SSCCS could face the need of long-time quantum gates implementations. Therefore, it could overcome natural limitations concerning the development of large-scale NMR.
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Affiliation(s)
| | - Teodorico Castro Ramalho
- Chemistry Department , Federal University of Lavras , 37200-000 Lavras , MG Brazil.,Center for Basic and Applied Research, Faculty of Informatics and Management , University Hradec Kralove , 50003 Hradec Kralove , Czech Republic
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Structure and bonding in NbX5 X = (F, Cl, Br and I) complexes: a molecular orbital perspective in the C–H bond activation. Theor Chem Acc 2018. [DOI: 10.1007/s00214-018-2348-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Density Functional Theory Applied to Excited State Intramolecular Proton Transfer in Imidazole-, Oxazole-, and Thiazole-Based Systems. Molecules 2018; 23:molecules23051231. [PMID: 29883373 PMCID: PMC6100175 DOI: 10.3390/molecules23051231] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2018] [Revised: 05/15/2018] [Accepted: 05/17/2018] [Indexed: 01/28/2023] Open
Abstract
Excited state intramolecular proton transfer (ESIPT) is a photoinduced process strongly associated to hydrogen bonding within a molecular framework. In this manuscript, we computed potential energy data using Time Dependent Density Functional Theory (TDDFT) for triphenyl-substituted heterocycles, which evidenced an energetically favorable proton transfer on the excited state (i.e., ESIPT) but not on the ground state. Moreover, we describe how changes on heterocyclic functionalities, based on imidazole, oxazole, and thiazole systems, affect the ESIPT process that converts an enolic species to a ketonic one through photon-induced proton transfer. Structural and photophysical data were obtained theoretically by means of density functional theory (DFT) calculations and contrasted for the three heterocyclics. Different functionals were used, but B3LYP was the one that adequately predicted absorption data. It was observed that the intramolecular hydrogen bond is strengthened in the excited state, supporting the occurrence of ESIPT. Finally, it was observed that, with the formation of the excited state, there is a decrease in electronic density at the oxygen atom that acts as proton donor, while there is a substantial increase in the corresponding density at the nitrogen atom that serves as proton acceptor, thus, indicating that proton transfer is indeed favored after photon absorption.
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Li GY, Han KL. The sensing mechanism studies of the fluorescent probes with electronically excited state calculations. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2017. [DOI: 10.1002/wcms.1351] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Guang-Yue Li
- State Key Laboratory of Molecular Reaction Dynamics; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
- College of Chemical Engineering; North China University of Science and Technology; Tangshan China
| | - Ke-Li Han
- State Key Laboratory of Molecular Reaction Dynamics; Dalian Institute of Chemical Physics, Chinese Academy of Sciences; Dalian China
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Dual Modes and Dual Emissions of an Amino-Naphthoquinone Derivative. J Fluoresc 2017; 27:1923-1928. [DOI: 10.1007/s10895-017-2130-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 06/13/2017] [Indexed: 11/26/2022]
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Lino JBR, Rocha EP, Ramalho TC. Value of NMR Parameters and DFT Calculations for Quantum Information Processing Utilizing Phosphorus Heterocycles. J Phys Chem A 2017; 121:4486-4495. [PMID: 28441482 DOI: 10.1021/acs.jpca.6b12728] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Quantum computing is the field of science that uses quantum-mechanical phenomena, such as superposition and entanglement, to perform operations on data. The fundamental information unit used in quantum computing is the quantum bit or qubit. It is well-known that quantum computers could theoretically be able to solve problems much more quickly than any classical computers. Currently, the first and still the most successful implementations of quantum information processing (QIP) have been based on nuclear spins in liquids. However, molecules that enable many qubits NMR QIP implementations should meet some conditions: have large chemical shifts and be appropriately dispersed for qubit addressability, appreciable spin-spin coupling between any pair of spins, and a long relaxation time. In this line, benzyldene-2,3-dihydro-1H-[1,3]diphosphole (BDF) derivatives have been theoretically tested for maximizing large chemical shifts, spin-spin coupling, and minimizing the hyperfine coupling constant. Thus, the structures were optimized at the B3LYP/6-311G(d,p) level and showed a significant similarity with the experimental geometrical parameters. The NMR spectroscopic parameters (δ and J) were calculated with six different DFT functionals. The τ-HCTH/6-31G(2d) level is in better agreement with the experimental data of 31P and 13C chemical shifts, while PCM-B3LYP/cc-pVDZ level shows a decrease on deviation between calculated and experimental values for P-P and P-C SSCC. The surface response technique was employed to rationalize how the hyperfine constant varies with the chemical shifts and coupling constants values. From our findings, BDF-NO2 was the best candidate for NMR quantum computations (NMR-QC) among the studied series.
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Affiliation(s)
- Jéssica B R Lino
- Department of Chemistry, Federal University of Lavras , P.O. Box 3037, 37200-000, Lavras, MG, Brazil
| | - Eduardo P Rocha
- Federal Institute of Science, Education and Technology of Southwest MG , Campus Rio, Pomba, MG, Brazil
| | - Teodorico C Ramalho
- Department of Chemistry, Federal University of Lavras , P.O. Box 3037, 37200-000, Lavras, MG, Brazil.,Center for Basic and Applied Research, Faculty of Informatics and Management, University of Hradec Kralove , Hradec Kralove, Czech Republic
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Santos LA, da Cunha EFF, Ramalho TC. Toward the Classical Description of Halogen Bonds: A Quantum Based Generalized Empirical Potential for Fluorine, Chlorine, and Bromine. J Phys Chem A 2017; 121:2442-2451. [DOI: 10.1021/acs.jpca.6b13112] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- Lucas A. Santos
- Department of Chemistry, Federal University of Lavras, CEP 37200-000 Lavras, Minas Gerais, Brazil
| | - Elaine F. F. da Cunha
- Department of Chemistry, Federal University of Lavras, CEP 37200-000 Lavras, Minas Gerais, Brazil
| | - Teodorico C. Ramalho
- Department of Chemistry, Federal University of Lavras, CEP 37200-000 Lavras, Minas Gerais, Brazil
- Center for Basic
and Applied Research, University Hradec Kralove, Hradec Kralove, Czech Republic
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da Rocha EP, Rodrigues HA, da Cunha EF, Ramalho TC. Probing kinetic and thermodynamic parameters as well as solvent and substituent effects on spectroscopic probes of 2-amino-1,4-naphthoquinone derivatives. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.09.028] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Insights into the value of statistical models and relativistic effects for the investigation of halogenated derivatives of fluorescent probes. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1862-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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