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Malonaldehyde-like Systems: BeF2 Clusters—A Subtle Balance between Hydrogen Bonds, Beryllium Bonds, and Resonance. SCI 2022. [DOI: 10.3390/sci4010007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
The stability of malonaldehyde is governed by intramolecular hydrogen bonds (IMHBs) as well as in malonaldehyde-like systems where oxygen is replaced by N or S at any of the basic sites. As beryllium bonds have been shown to strongly cooperate with hydrogen bonds, this work explores at the high level ab initio G4 level of theory the effect of including this non-covalent interaction in the system through its association with BeF2. Although malonaldehyde follows the expected trends, where the formation of a pseudocyclic form is favored also when IMHB and Be bonds are present, the subtle balance between both non-covalent interactions leads to some surprising results when other heteroatoms are involved, to the point that interaction energies can be much larger than expected or even cyclization is not favored. A complete analysis using different computational tools gives an answer to those cases escaping the predictable trends.
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Ibrahim MAA, Mohamed YAM, Abd Elhafez HSM, Shehata MNI, Soliman MES, Ahmed MN, Abd El-Mageed HR, Moussa NAM. R •-hole interactions of group IV-VII radical-containing molecules: A comparative study. J Mol Graph Model 2021; 111:108097. [PMID: 34890896 DOI: 10.1016/j.jmgm.2021.108097] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 11/10/2021] [Accepted: 11/26/2021] [Indexed: 11/30/2022]
Abstract
For the first time, the potentiality of the sp2-hybridized group IV-VII radical (R•)-containing molecules to participate in R•-hole interactions was comparatively assessed using •SiF3,•POF2, •SO2F, and •ClO3 models in the trigonal pyramidal geometry. In that spirit, a plethora of quantum mechanical calculations was performed at the MP2/aug-cc-pVTZ level of theory. According to the results, all the investigated R•-containing molecules exhibited potent versatility to engage in R•-hole … Lewis base interactions with significant negative binding energies for the NCH-based complexes. The strength of R•-hole interactions was perceived to obey the •ClO3 … > •SO2F … > •POF2 … > •SiF3 … Lewis base order, outlining an inverse correlation between the binding energy and the atomic size of the R•-hole donor. Benchmarking of the binding energy at the CCSD/CBS(T) computational level was executed for all the explored interactions and addressed an obvious similarity between the MP2 and CCSD energetic findings. QTAIM analysis critically unveiled the closed-shell nature of the explored R•-hole interactions. SAPT-EDA proclaimed the reciprocal contributions of electrostatic and dispersion forces to the total binding energy. These observations demonstrate in better detail the nature of R•-hole interactions, leading to a convincing amelioration for versatile fields relevant to materials science and drug design.
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Affiliation(s)
- Mahmoud A A Ibrahim
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, 61519, Egypt.
| | - Yasmeen A M Mohamed
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, 61519, Egypt
| | - Heba S M Abd Elhafez
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, 61519, Egypt
| | - Mohammed N I Shehata
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, 61519, Egypt
| | - Mahmoud E S Soliman
- Molecular Bio-computation and Drug Design Lab, School of Health Sciences, University of KwaZulu-Natal, Westville, Durban, 4000, South Africa
| | - Muhammad Naeem Ahmed
- Department of Chemistry, The University of Azad Jammu and Kashmir, Muzaffarabad, 13100, Pakistan
| | - H R Abd El-Mageed
- Micro-Analysis, Environmental Research nd Community Affairs Center (MAESC), Faculty of Science, Beni-Suef University, Beni-Suef, 62511, Egypt
| | - Nayra A M Moussa
- Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, 61519, Egypt
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Yu D, Wu D, Liu JY, Li SY, Li Y. On single-electron magnesium bonding formation and the effect of methyl substitution. RSC Adv 2020; 10:34413-34420. [PMID: 35514394 PMCID: PMC9056782 DOI: 10.1039/d0ra06591a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 09/08/2020] [Indexed: 12/14/2022] Open
Abstract
The complexes formed between MgX2 (X = F, H) molecules and alkyl radicals Y [Y = CH3, CH2CH3, CH(CH3)2, and C(CH3)3] have been characterized by using quantum chemical methods. The binding distance in all cases is less than the sum of vdW radii of Mg and C, indicating the formation of a non-covalent interaction, namely single-electron magnesium bond. Energy decomposition analysis reveals that electrostatic and polarization contributions are the major components responsible for the stability of the studied complexes. According to interaction energy, atoms in molecules, and independent gradient model analyses, methyl substitution on electron donor Y imposes a positive effect on its complexation with MgX2. When compared with other nonbonded interactions, the single-electron magnesium bond is found to have strength comparable to those of the single-electron beryllium bond and π-magnesium bond. The complexes formed between MgX2 (X = F, H) molecules and alkyl radicals Y [Y = CH3, CH2CH3, CH(CH3)2, and C(CH3)3] have been characterized by using quantum chemical methods.![]()
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Affiliation(s)
- Dan Yu
- Institute of Theoretical Chemistry, Laboratory of Theoretical and Computational Chemistry, College of Chemistry, Jilin University Changchun 130023 P. R. China
| | - Di Wu
- Institute of Theoretical Chemistry, Laboratory of Theoretical and Computational Chemistry, College of Chemistry, Jilin University Changchun 130023 P. R. China
| | - Jing-Yao Liu
- Institute of Theoretical Chemistry, Laboratory of Theoretical and Computational Chemistry, College of Chemistry, Jilin University Changchun 130023 P. R. China
| | - Si-Yi Li
- Department of Transdisciplinary Science and Engineering, Tokyo Institute of Technology 2-12-1 Ookayama, Meguro Tokyo 152-8551 Japan
| | - Ying Li
- Institute of Theoretical Chemistry, Laboratory of Theoretical and Computational Chemistry, College of Chemistry, Jilin University Changchun 130023 P. R. China
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Zhao XF, Li JJ, Li HR, Yuan C, Tian X, Li SD, Wu YB, Guo JC, Wang ZX. Viable aromatic BenHn stars enclosing a planar hypercoordinate boron or late transition metal. Phys Chem Chem Phys 2018; 20:7217-7222. [DOI: 10.1039/c7cp06955c] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Similar to Bn rings, star-like BenHn rings can serve as the n-electron σ-donors for designing species with planar hypercoordinate atom.
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Affiliation(s)
- Xue-Feng Zhao
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Jia-Jia Li
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Hai-Ru Li
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Caixia Yuan
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Xinxin Tian
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Si-Dian Li
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Yan-Bo Wu
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Jin-Chang Guo
- The Key Lab of Materials for Energy Conversion and Storage of Shanxi Province
- Institute of Molecular Science
- Shanxi University
- Taiyuan
- People's Republic of China
| | - Zhi-Xiang Wang
- College of Chemistry and Chemical Engineering, University of Chinese Academy of Sciences
- Beijing 100049
- People's Republic of China
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Eskandari K. Nature of beryllium bonds in view of interacting quantum atoms and natural energy decomposition analysis. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2016.06.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Li SY, Wu D, Li Y, Yu D, Liu JY, Li ZR. Insight into structural and π–magnesium bonding characteristics of the X2Mg⋯Y (X = H, F; Y = C2H2, C2H4and C6H6) complexes. RSC Adv 2016. [DOI: 10.1039/c6ra23368f] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Quantum chemical calculations have been performed to study the nature of interaction of complexes formed by MgX2(X = H, F) molecules with acetylene, ethylene, and benzene.
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Affiliation(s)
- Si-Yi Li
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Di Wu
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Ying Li
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Dan Yu
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Jia-Yuan Liu
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
| | - Zhi-Ru Li
- Institute of Theoretical Chemistry
- Jilin University
- Changchun 130023
- P. R. China
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