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Boukar O, Fifen JJ, Conradie J, Conradie MM. Solvation energies of the ferrous ion in water and in ammonia at various temperatures. J Mol Model 2024; 30:52. [PMID: 38285315 DOI: 10.1007/s00894-024-05839-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2023] [Accepted: 01/09/2024] [Indexed: 01/30/2024]
Abstract
CONTEXT The solvation of metal ions is crucial to understanding relevant properties in physics, chemistry, or biology. Therefore, we present solvation enthalpies and solvation free energies of the ferrous ion in water and ammonia. Our results agree well with the experimental reports for the hydration free energy and hydration enthalpy. We obtained [Formula: see text] kJ mol[Formula: see text] for the hydration free energy and [Formula: see text] kJ mol[Formula: see text] for the hydration enthalpy of ferrous ion in water at room temperature. At ambient temperature, we obtained [Formula: see text] kJ mol[Formula: see text] as the [Formula: see text] ammoniation free energy and [Formula: see text] kJ mol[Formula: see text] for the ammoniation enthalpy. In addition, the free energy of solvation is deeply affected when the temperature increases. This pattern can be attributed to the rise of entropy when the temperature rises. Besides, the temperature does not affect the ammoniation enthalpies and the hydration enthalpy of the [Formula: see text] ion. METHOD All the geometry optimizations are performed at the MP2 methods associated with the 6-31++g(d,p) basis set of Pople. solvated phase structures of [Formula: see text] ion in water or in ammonia are performed using the PCM model. The [Formula: see text] program suite was used to perform all the calculations. The program TEMPO was also used to evaluate the temperature sensitivity of the different obtained geometries.
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Affiliation(s)
- Ousman Boukar
- Department of Physics, Faculty of Science, University of Maroua, P.O. Box 46, Maroua, Cameroon.
| | - Jean Jules Fifen
- Quantum Theory and Aplications Unit, Department of Physics, Faculty of Science, The University of Ngaoundere, P.O. Box 454, Ngaoundere, Cameroon.
| | - Jeanet Conradie
- Department of Chemistry, University of the Free State, PO Box 339, Bloemfontein, 9300, South Africa
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Da-yang TE, Lai CH. Potential energy surfaces of the Cu2+(NH3)n=1−10 clusters in solvent phase: A DFT study. Chem Phys 2023. [DOI: 10.1016/j.chemphys.2023.111902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023]
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Structures, Binding and Clustering Energies of Cu2+(MeOH)n=1-8 Clusters and Temperature Effects : A DFT Study. Polyhedron 2023. [DOI: 10.1016/j.poly.2023.116343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
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Malloum A, Conradie J. Hydrogen bond networks of dimethylsulfoxide (DMSO) pentamer. J Mol Graph Model 2023; 118:108363. [PMID: 36308947 DOI: 10.1016/j.jmgm.2022.108363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2022] [Revised: 10/05/2022] [Accepted: 10/11/2022] [Indexed: 11/28/2022]
Abstract
Understanding of clusters of dimethylsulfoxide (DMSO) is important in several applications in Chemistry. Despite its importance, very few studies of DMSO clusters, (DMSO)n, have been reported in comparison to systems such as water clusters or methanol clusters. In order to provide further understanding of DMSO clusters, we investigated the structures and non-covalent interactions of the (DMSO)n, n=5. Therefore, the potential energy surface (PES) of the DMSO pentamer has been examined using classical molecular dynamics. The structures generated using classical molecular dynamics are further optimized at the PW6B95D3/aug-cc-pVDZ level of theory. To comprehend the non-covalent bondings in the DMSO pentamer, we carried out a quantum theory of atoms in molecule (QTAIM) analysis. In addition, the effects of temperature on the structural stability is investigated between 20 and 500K. It comes out that seven different kind of non-covalent bondings can be found in DMSO pentamers.
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Affiliation(s)
- Alhadji Malloum
- Department of Chemistry, University of the Free State, PO BOX 339, Bloemfontein 9300, South Africa; Department of Physics, Faculty of Science, University of Maroua, PO BOX 46, Maroua, Cameroon.
| | - Jeanet Conradie
- Department of Chemistry, University of the Free State, PO BOX 339, Bloemfontein 9300, South Africa; Department of Chemistry, UiT - The Arctic University of Norway, N-9037 Tromsø, Norway
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Boukar O, Fifen JJ, Malloum A, Nsangou M, Ghalila H, Conradie J. Solvation energies of ferrous ion in methanol at various temperatures. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119460] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Beryllium ion coordination in Ammonia, methanol and water solvents. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119414] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Da-yang TE, Fifen JJ, Conradie J, Conradie MM. Structures, temperature effect, binding and clustering energies of Cu2+(MeOH)n=1-8 clusters and extrapolations. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.119439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Malloum A, Conradie J. Non-covalent interactions in dimethylsulfoxide (DMSO) clusters and DFT benchmarking. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118522] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Malloum A, Conradie J. Structures, binding energies and non-covalent interactions of furan clusters. J Mol Graph Model 2021; 111:108102. [PMID: 34915345 DOI: 10.1016/j.jmgm.2021.108102] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Revised: 11/29/2021] [Accepted: 11/30/2021] [Indexed: 12/20/2022]
Abstract
Understanding of the furan solvent is subjected to the knowledge of the structures of the furan clusters and interactions taking place therein. Although, furan clusters can be very important to determine the dynamics and the properties of the furan solvent, there has been only a few investigations reported on furan dimer. In this work, we have explored the potential energy surfaces (PESs) of the furan clusters using two incremental levels of theory. Structures have been initially generated using classical molecular dynamics followed by full optimization at the MP2/aug-cc-pVDZ level of theory. The results show that the most stable structure of the furan dimer has a stacking configuration while that of the trimer has a cyclic configuration. We have noted that the structures of the furan tetramer have no definite configurations. In addition, we have performed a quantum theory of atoms in molecule (QTAIM) analysis to identify all possible non-covalent interactions of the furan clusters. The results show that six different types of non-covalent interactions can be identified in furan clusters. We have noted that the CH⋯C and CH⋯O hydrogen bondings are the strongest non-covalent interactions while the H⋯H bonding interaction is found to be the weakest. Furthermore, we have assessed the performance of ten DFT functionals in calculating the binding energies of the furan clusters. The ten DFT functionals (M05, M05-2X, M06, M06-2X, M08HX, PBE0, ωB97XD, PW6B95D3, APFD and MN15) have been benchmarked to DLPNO-CCSD(T)/CBS. The functionals M05-2X and M06 are recommended for further affordable investigations of the furan clusters.
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Affiliation(s)
- Alhadji Malloum
- Department of Chemistry, University of the Free State, PO BOX 339, Bloemfontein, 9300, South Africa; Department of Physics, Faculty of Science, University of Maroua, PO BOX 46, Maroua, Cameroon.
| | - Jeanet Conradie
- Department of Chemistry, University of the Free State, PO BOX 339, Bloemfontein, 9300, South Africa; Department of Chemistry, UiT - The Arctic University of Norway, N-9037 Tromsø, Norway
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León-Pimentel CI, Saint-Martin H, Ramírez-Solís A. Mg(II) and Ca(II) Microsolvation by Ammonia: Born-Oppenheimer Molecular Dynamics Studies. J Phys Chem A 2021; 125:4565-4577. [PMID: 34029097 DOI: 10.1021/acs.jpca.1c02815] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the structural and energetic features of the Mg2+ and Ca2+ cations in ammonia microsolvation environments. Born-Oppenhemier molecular dynamics studies are carried out for [Mg(NH3)n]2+ and [Ca(NH3)n]2+ clusters with n = 2, 3, 4, 6, 8, 20, and 27 at 300 K based on hybrid density functional theory calculations. We determine binding energies per ammonia molecule and the metal cation solvation patterns as a function of the number of molecules. The general trend for Mg2+ is that the Mg-N distances increase as a function of n until the first solvation shell is populated by six ammonia molecules, and then the distances slightly decrease while CN = 6 does not change. For Ca2+, the first solvation shell at room temperature is populated by eight ammonia molecules for clusters with more than one solvation shell, leading to a different structure from that of [Ca(NH3)6]2+ hexamine. The evaporation of NH3 molecules was found at 300 K only for Mg2+ clusters with n ≥ 10; this was not the case for Ca2+ clusters. Vibrational spectra are obtained for all of the clusters, and the evolution of the main features is discussed. EXAFS spectra are also presented for the [Mg(NH3)27(NH3)27]2+ and [Ca(NH3)27]2+ clusters, which yield valuable data to be compared with experimental data in the liquid phase, as previously done for the aqueous solvation of these dications.
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Affiliation(s)
- C I León-Pimentel
- Departamento de Física, Centro de Investigación en Ciencias-IICBA Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209, México
| | - H Saint-Martin
- Instituto de Ciencias Físicas, Universidad Nacional Autonóna de México, Cuernvaca, Morelos 62210 México
| | - A Ramírez-Solís
- Departamento de Física, Centro de Investigación en Ciencias-IICBA Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos 62209, México
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Boukar O, Fifen JJ, Nsangou M, Ghalila H, Conradie J. Structures and relative stability of hydrated ferrous ion clusters and temperature effects. NEW J CHEM 2021. [DOI: 10.1039/d1nj01849c] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Structures of solvated ferrous ion clusters have been investigated in the singlet and quintet spin states of the ferrous ion. Relative stabilities of isomers are also discussed at different temperatures.
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Affiliation(s)
- Ousman Boukar
- Department of Physics
- Faculty of Science
- University of Maroua
- Cameroon
| | - Jean Jules Fifen
- Quantum Theory and Aplications Unit
- Department of Physics
- Faculty of Science
- The University of Ngaoundere
- Ngaoundere
| | - Mama Nsangou
- Department of Physics
- Faculty of Science
- University of Maroua
- Cameroon
- Quantum Theory and Aplications Unit
| | - Hassen Ghalila
- Faculty of Science
- University of Tunis El Manar
- Tunis
- Tunisia
| | - Jeanet Conradie
- Department of Chemistry
- University of the Free State
- Bloemfontein
- South Africa
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Abstract
Potential energy surfaces of protonated acetonitrile clusters have been explored to locate global and local minima energy structures. The structures are stabilized by strong hydrogen bonds, anti-parallel dimers, dipole–dipole and CH⋯N interactions.
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Affiliation(s)
- Alhadji Malloum
- Department of Chemistry
- University of the Free State
- Bloemfontein
- South Africa
- Department of Physics
| | - Jeanet Conradie
- Department of Chemistry
- University of the Free State
- Bloemfontein
- South Africa
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