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Parolo C, Idili A, Heikenfeld J, Plaxco KW. Conformational-switch biosensors as novel tools to support continuous, real-time molecular monitoring in lab-on-a-chip devices. LAB ON A CHIP 2023; 23:1339-1348. [PMID: 36655710 PMCID: PMC10799767 DOI: 10.1039/d2lc00716a] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Recent years have seen continued expansion of the functionality of lab on a chip (LOC) devices. Indeed LOCs now provide scientists and developers with useful and versatile platforms across a myriad of chemical and biological applications. The field still fails, however, to integrate an often important element of bench-top analytics: real-time molecular measurements that can be used to "guide" a chemical response. Here we describe the analytical techniques that could provide LOCs with such real-time molecular monitoring capabilities. It appears to us that, among the approaches that are general (i.e., that are independent of the reactive or optical properties of their targets), sensing strategies relying on binding-induced conformational change of bioreceptors are most likely to succeed in such applications.
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Affiliation(s)
- Claudio Parolo
- Barcelona Institute for Global Health, Hospital Clínic Universitat de Barcelona, 08036, Barcelona, Spain
| | - Andrea Idili
- Department of Chemical Science and Technologies, University of Rome, Tor Vergata, 00133 Rome, Italy
| | - Jason Heikenfeld
- Novel Devices Laboratory, University of Cincinnati, Cincinnati, Ohio, USA
| | - Kevin W Plaxco
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, California, USA.
- Interdepartmental Program in Biomolecular Science and Engineering, University of California Santa Barbara, Santa Barbara, California, USA
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A Perspective on Recent Advances in Piezoelectric Chemical Sensors for Environmental Monitoring and Foodstuffs Analysis. CHEMOSENSORS 2019. [DOI: 10.3390/chemosensors7030039] [Citation(s) in RCA: 38] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
This paper provides a selection of the last two decades publications on the development and application of chemical sensors based on piezoelectric quartz resonators for a wide range of analytical tasks. Most of the attention is devoted to an analysis of gas and liquid media and to industrial processes controls utilizing single quartz crystal microbalance (QCM) sensors, bulk acoustic wave (BAW) sensors, and their arrays in e-nose systems. The unique opportunity to estimate several heavy metals in natural and wastewater samples from the output of a QCM sensor array highly sensitive to changes in metal ion activity in water vapor is shown. The high potential of QCM multisensor systems for fast and cost-effective water contamination assessments “in situ” without sample pretreatment is demonstrated.
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Abstract
AbstractOne of the topical approaches in analysis – outside the framework of traditional ones – is the formation of an integral “image” of the object. There are several approaches to solving the issue of obtaining as much information about the sample by a certain portion of its properties or its composition as possible. The first approach is forming a visual image (diagram) of several different properties of the analyzed sample, for example, the content of certain metals, acids, volatile components and some other indicators of wine quality. The consolidated image of a sample enables us to distinguish samples identical or similar in the selected properties from crucially different ones, even in case of an acceptable change of each indicator. Or else, using the consolidated image one can evaluate the direction of an image shift of a certain sample compared to the set of standard samples. The analysis of the geometry of the sample image by diverse indicators affords ground for assumption of the reasons for this deviation, as well as identification of falsification, or even solution of a more complicated task: detecting the area of growth of raw materials. The second approach is close to the first one in terms of methodology, but it digitizes properties using detectors and presents this as an image (“visual print” of response) of signals of these detectors on some components of the sample (presence, content). The feature of this approach is the use of a detector system that is non-selective and cross-sensitive to certain sample components. These sample images are produced using a system of “electronic nose”. “Visual prints” of array signals of different character sensors contain qualitative and quantitative information about the part of the analyzed sample which is sorbed by sensors. Despite the uncertainty of this information, “electronic noses” of piezoelectric type are widely used in the analysis of samples with complex varying composition.
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Macchia E, Alberga D, Manoli K, Mangiatordi GF, Magliulo M, Palazzo G, Giordano F, Lattanzi G, Torsi L. Organic bioelectronics probing conformational changes in surface confined proteins. Sci Rep 2016; 6:28085. [PMID: 27312768 PMCID: PMC4911579 DOI: 10.1038/srep28085] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Accepted: 05/31/2016] [Indexed: 02/07/2023] Open
Abstract
The study of proteins confined on a surface has attracted a great deal of attention due to its relevance in the development of bio-systems for laboratory and clinical settings. In this respect, organic bio-electronic platforms can be used as tools to achieve a deeper understanding of the processes involving protein interfaces. In this work, biotin-binding proteins have been integrated in two different organic thin-film transistor (TFT) configurations to separately address the changes occurring in the protein-ligand complex morphology and dipole moment. This has been achieved by decoupling the output current change upon binding, taken as the transducing signal, into its component figures of merit. In particular, the threshold voltage is related to the protein dipole moment, while the field-effect mobility is associated with conformational changes occurring in the proteins of the layer when ligand binding occurs. Molecular Dynamics simulations on the whole avidin tetramer in presence and absence of ligands were carried out, to evaluate how the tight interactions with the ligand affect the protein dipole moment and the conformation of the loops surrounding the binding pocket. These simulations allow assembling a rather complete picture of the studied interaction processes and support the interpretation of the experimental results.
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Affiliation(s)
- Eleonora Macchia
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro - Bari (Italy)
| | - Domenico Alberga
- Dipartimento Interateneo di Fisica "M. Merlin" dell'Università e del Politecnico di Bari - Bari (Italy)
| | - Kyriaki Manoli
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro - Bari (Italy)
| | - Giuseppe F Mangiatordi
- Dipartimento di Farmacia - Scienze del Farmaco, Università degli Studi di Bari Aldo Moro - Bari (Italy)
| | - Maria Magliulo
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro - Bari (Italy)
| | - Gerardo Palazzo
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro - Bari (Italy)
| | - Francesco Giordano
- Dipartimento Interateneo di Fisica "M. Merlin" dell'Università e del Politecnico di Bari - Bari (Italy)
| | - Gianluca Lattanzi
- Dipartimento di Medicina Clinica e Sperimentale -Università degli Studi di Foggia - Foggia (Italy)
| | - Luisa Torsi
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro - Bari (Italy)
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Huang W, Diallo AK, Dailey JL, Besar K, Katz HE. Electrochemical processes and mechanistic aspects of field-effect sensors for biomolecules. JOURNAL OF MATERIALS CHEMISTRY. C 2015; 3:6445-6470. [PMID: 29238595 PMCID: PMC5724786 DOI: 10.1039/c5tc00755k] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Electronic biosensing is a leading technology for determining concentrations of biomolecules. In some cases, the presence of an analyte molecule induces a measured change in current flow, while in other cases, a new potential difference is established. In the particular case of a field effect biosensor, the potential difference is monitored as a change in conductance elsewhere in the device, such as across a film of an underlying semiconductor. Often, the mechanisms that lead to these responses are not specifically determined. Because improved understanding of these mechanisms will lead to improved performance, it is important to highlight those studies where various mechanistic possibilities are investigated. This review explores a range of possible mechanistic contributions to field-effect biosensor signals. First, we define the field-effect biosensor and the chemical interactions that lead to the field effect, followed by a section on theoretical and mechanistic background. We then discuss materials used in field-effect biosensors and approaches to improving signals from field-effect biosensors. We specifically cover the biomolecule interactions that produce local electric fields, structures and processes at interfaces between bioanalyte solutions and electronic materials, semiconductors used in biochemical sensors, dielectric layers used in top-gated sensors, and mechanisms for converting the surface voltage change to higher signal/noise outputs in circuits.
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Affiliation(s)
- Weiguo Huang
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Abdou Karim Diallo
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Jennifer L Dailey
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Kalpana Besar
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
| | - Howard E Katz
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, 206 Maryland Hall, Baltimore, MD, USA
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Mahdavi M, Samaeian A, Hajmirzaheydarali M, Shahmohammadi M, Mohajerzadeh S, Malboobi MA. Label-free detection of DNA hybridization using a porous poly-Si ion-sensitive field effect transistor. RSC Adv 2014. [DOI: 10.1039/c4ra07433e] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Naab BD, Himmelberger S, Diao Y, Vandewal K, Wei P, Lussem B, Salleo A, Bao Z. High mobility N-type transistors based on solution-sheared doped 6,13-bis(triisopropylsilylethynyl)pentacene thin films. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2013; 25:4663-4667. [PMID: 23813467 DOI: 10.1002/adma.201205098] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2012] [Revised: 04/29/2013] [Indexed: 06/02/2023]
Abstract
An N-Type organic thin-film transistor (OTFT) based on doped 6,13-Bis(triisopropylsilylethynyl)pentacene is presented. A transition from p-type to n-type occurrs with increasing doping concentrations, and the highest performing n-channel OTFTs are obtained with 50 mol% dopant. X-ray diffraction, scanning Auger microscopy, and secondary ionization mass spectrometry are used to characterize the morphology of the blends. The high performance of the obtained transistors is attributed to the highly crystalline and aligned nature of the doped thin films.
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Affiliation(s)
- Benjamin D Naab
- Department of Chemical Engineering, Stanford University, 359 N-S Axis Stauffer III, Stanford, CA 94303, USA
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Liao C, Yan F. Organic Semiconductors in Organic Thin-Film Transistor-Based Chemical and Biological Sensors. POLYM REV 2013. [DOI: 10.1080/15583724.2013.808665] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
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Magliulo M, Mallardi A, Gristina R, Ridi F, Sabbatini L, Cioffi N, Palazzo G, Torsi L. Part per Trillion Label-Free Electronic Bioanalytical Detection. Anal Chem 2013; 85:3849-57. [DOI: 10.1021/ac302702n] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Maria Magliulo
- Dipartimento
di Chimica, Università degli Studi di Bari “A. Moro” - Via Orabona, 4 70126
Bari, Italy
| | - Antonia Mallardi
- CNR-IPCF, Istituto per i Processi Chimico-Fisici - Via Orabona, 4 70126
Bari, Italy
| | - Roberto Gristina
- CNR-IMIP, Istituto di Metodologie Inorganiche e dei Plasmi - Via Orabona,
4 70126 Bari, Italy
| | - Francesca Ridi
- Dipartimento
di Chimica − Università degli Studi di Firenze − via della Lastruccia, 3 50019
Sesto Fiorentino, Italy
- CSGI − Università degli Studi di Firenze − via della Lastruccia,
3 50019 Sesto Fiorentino, Italy
| | - Luigia Sabbatini
- Dipartimento
di Chimica, Università degli Studi di Bari “A. Moro” - Via Orabona, 4 70126
Bari, Italy
| | - Nicola Cioffi
- Dipartimento
di Chimica, Università degli Studi di Bari “A. Moro” - Via Orabona, 4 70126
Bari, Italy
| | - Gerardo Palazzo
- Dipartimento
di Chimica, Università degli Studi di Bari “A. Moro” - Via Orabona, 4 70126
Bari, Italy
- CSGI − Università degli Studi di Firenze − via della Lastruccia,
3 50019 Sesto Fiorentino, Italy
| | - Luisa Torsi
- Dipartimento
di Chimica, Università degli Studi di Bari “A. Moro” - Via Orabona, 4 70126
Bari, Italy
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Otero TF. Reactions drive conformations. Biomimetic properties and devices, theoretical description. J Mater Chem B 2013; 1:3754-3767. [DOI: 10.1039/c3tb20112k] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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