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Lima PJM, Rios NS, Vilarrasa-García E, Cecilia JA, Rodríguez-Castellón E, Gonçalves LRB. Preparation of a heterogeneous biocatalyst through Thermomyces lanuginosus lipase immobilization on pore-expanded SBA-15. Int J Biol Macromol 2024; 274:133359. [PMID: 38914393 DOI: 10.1016/j.ijbiomac.2024.133359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Revised: 06/18/2024] [Accepted: 06/20/2024] [Indexed: 06/26/2024]
Abstract
Heterogeneous biocatalysts were prepared by adsorbing T. lanuginosus lipase (TLL) onto uncalcined (SBAUC-TLL) and calcined (SBAC-TLL) SBA-15, using ammonium fluoride as a pore expander to facilitate TLL immobilization. At an enzyme load of 1 mg/g, high immobilization yields (>90 %) and recovered activities (>80 % for SBAUC-TLL and 70 % for SBAC-TLL) were achieved. When increasing the enzyme load to 5 mg/g, the immobilization yield of SBAUC-TLL was 80 %, and the recovered activity was 50 %, while SBAC-TLL had a yield of 100 % and a recovered activity of 36 %. Crosslinking with glutaraldehyde (GA) was conducted to improve stability (SBAUC-TLL-GA and SBAC-TLL-GA). Although SBAC-TLL-GA lost 25 % of initial activity after GA modifications, it exhibited the highest thermal (t1/2 = 5.7 h at 65 °C), when compared to SBAC-TLL (t1/2 = 12 min) and the soluble enzyme (t1/2 = 36 min), and operational stability (retained 100 % activity after 5 cycles). Both biocatalysts presented high storage stability since they retained 100 % of initial activity for 30 days. These results highlight SBA-15's potential as an enzyme support and the protocol's efficacy in enhancing stability, with implications for industrial applications in the food, chemical, and pharmaceutical sectors.
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Affiliation(s)
- Paula Jéssyca Morais Lima
- Departamento de Engenharia Química, Universidade Federal do Ceará, Campus do Pici, Fortaleza, Ceará, Brazil
| | - Nathália Saraiva Rios
- Departamento de Engenharia Química, Universidade Federal do Rio Grande do Norte, Natal, Brazil
| | - Enrique Vilarrasa-García
- Departamento de Engenharia Química, Universidade Federal do Ceará, Campus do Pici, Fortaleza, Ceará, Brazil
| | - Juan Antonio Cecilia
- Departamento de Química Inorgánica, Cristalografía y Mineralogía, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain
| | - Enrique Rodríguez-Castellón
- Departamento de Química Inorgánica, Cristalografía y Mineralogía, Facultad de Ciencias, Universidad de Málaga, Málaga, Spain
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Ghassemi N, Poulhazan A, Deligey F, Mentink-Vigier F, Marcotte I, Wang T. Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants. Chem Rev 2021; 122:10036-10086. [PMID: 34878762 DOI: 10.1021/acs.chemrev.1c00669] [Citation(s) in RCA: 55] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Extracellular matrixes (ECMs), such as the cell walls and biofilms, are important for supporting cell integrity and function and regulating intercellular communication. These biomaterials are also of significant interest to the production of biofuels and the development of antimicrobial treatment. Solid-state nuclear magnetic resonance (ssNMR) and magic-angle spinning-dynamic nuclear polarization (MAS-DNP) are uniquely powerful for understanding the conformational structure, dynamical characteristics, and supramolecular assemblies of carbohydrates and other biomolecules in ECMs. This review highlights the recent high-resolution investigations of intact ECMs and native cells in many organisms spanning across plants, bacteria, fungi, and algae. We spotlight the structural principles identified in ECMs, discuss the current technical limitation and underexplored biochemical topics, and point out the promising opportunities enabled by the recent advances of the rapidly evolving ssNMR technology.
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Affiliation(s)
- Nader Ghassemi
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | - Alexandre Poulhazan
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States.,Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Fabien Deligey
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
| | | | - Isabelle Marcotte
- Department of Chemistry, Université du Québec à Montréal, Montreal H2X 2J6, Canada
| | - Tuo Wang
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, United States
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Soleimani M, van Breemen LCA, Maddala SP, Joosten RRM, Wu H, Schreur-Piet I, van Benthem RATM, Friedrich H. In Situ Manipulation and Micromechanical Characterization of Diatom Frustule Constituents Using Focused Ion Beam Scanning Electron Microscopy. SMALL METHODS 2021; 5:e2100638. [PMID: 34928031 DOI: 10.1002/smtd.202100638] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Revised: 09/17/2021] [Indexed: 06/14/2023]
Abstract
Biocomposite structures are difficult to characterize by bulk approaches due to their morphological complexity and compositional heterogeneity. Therefore, a versatile method is required to assess, for example, the mechanical properties of geometrically simple parts of biocomposites at the relevant length scales. Here, it is demonstrated how a combination of Focused Ion Beam Scanning Electron Microscopy (FIB-SEM) and micromanipulators can be used to isolate, transfer, and determine the mechanical properties of frustule constituents of diatom Thalassiosira pseudonana (T.p.). Specifically, two parts of the diatom frustule, girdle bands and valves, are separated by FIB milling and manipulated using a sharp tungsten tip without compromising their physical or chemical integrity. In situ mechanical studies on isolated girdle bands combined with Finite Element Method (FEM) simulations, enables the quantitative assessment of the Young's modulus of this biosilica; E = 40.0 GPa. In addition, the mechanical strength of isolated valves could be measured by transferring and mounting them on top of premilled holes in the sample support. This approach may be extended to any hierarchical biocomposite material, regardless of its chemical composition, to isolate, transfer, and investigate the mechanical properties of selected constituents or specific regions.
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Affiliation(s)
- Mohammad Soleimani
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
| | - Lambèrt C A van Breemen
- Polymer Technology, Materials Technology Institute, Department of Mechanical Engineering, Eindhoven University of Technology, Groene Loper 15, Eindhoven, 5612 AE, The Netherlands
| | - Sai P Maddala
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
| | - Rick R M Joosten
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
| | - Hanglong Wu
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
| | - Ingeborg Schreur-Piet
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
| | - Rolf A T M van Benthem
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
- DSM Materials Science Center, Netherlands, P.O. Box 18, Geleen, 6160 MD, The Netherlands
| | - Heiner Friedrich
- Laboratory of Physical Chemistry, and Center for Multiscale Electron Microscopy, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
- Institute for Complex Molecular Systems, Eindhoven University of Technology, Groene Loper 5, Eindhoven, 5612 AE, The Netherlands
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Genome-scale metabolic model of the diatom Thalassiosira pseudonana highlights the importance of nitrogen and sulfur metabolism in redox balance. PLoS One 2021; 16:e0241960. [PMID: 33760840 PMCID: PMC7990286 DOI: 10.1371/journal.pone.0241960] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2020] [Accepted: 03/03/2021] [Indexed: 12/22/2022] Open
Abstract
Diatoms are unicellular photosynthetic algae known to secrete organic matter that fuels secondary production in the ocean, though our knowledge of how their physiology impacts the composition of dissolved organic matter remains limited. Like all photosynthetic organisms, their use of light for energy and reducing power creates the challenge of avoiding cellular damage. To better understand the interplay between redox balance and organic matter secretion, we reconstructed a genome-scale metabolic model of Thalassiosira pseudonana strain CCMP 1335, a model for diatom molecular biology and physiology, with a 60-year history of studies. The model simulates the metabolic activities of 1,432 genes via a network of 2,792 metabolites produced through 6,079 reactions distributed across six subcellular compartments. Growth was simulated under different steady-state light conditions (5–200 μmol photons m-2 s-1) and in a batch culture progressing from exponential growth to nitrate-limitation and nitrogen-starvation. We used the model to examine the dissipation of reductants generated through light-dependent processes and found that when available, nitrate assimilation is an important means of dissipating reductants in the plastid; under nitrate-limiting conditions, sulfate assimilation plays a similar role. The use of either nitrate or sulfate uptake to balance redox reactions leads to the secretion of distinct organic nitrogen and sulfur compounds. Such compounds can be accessed by bacteria in the surface ocean. The model of the diatom Thalassiosira pseudonana provides a mechanistic explanation for the production of ecologically and climatologically relevant compounds that may serve as the basis for intricate, cross-kingdom microbial networks. Diatom metabolism has an important influence on global biogeochemistry; metabolic models of marine microorganisms link genes to ecosystems and may be key to integrating molecular data with models of ocean biogeochemistry.
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Zancajo VMR, Diehn S, Filiba N, Goobes G, Kneipp J, Elbaum R. Spectroscopic Discrimination of Sorghum Silica Phytoliths. FRONTIERS IN PLANT SCIENCE 2019; 10:1571. [PMID: 31921236 PMCID: PMC6917640 DOI: 10.3389/fpls.2019.01571] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2019] [Accepted: 11/11/2019] [Indexed: 05/09/2023]
Abstract
Grasses accumulate silicon in the form of silicic acid, which is precipitated as amorphous silica in microscopic particles termed phytoliths. These particles comprise a variety of morphologies according to the cell type in which the silica was deposited. Despite the evident morphological differences, phytolith chemistry has mostly been analysed in bulk samples, neglecting differences between the varied types formed in the same species. In this work, we extracted leaf phytoliths from mature plants of Sorghum bicolor (L.) Moench. Using solid state NMR and thermogravimetric analysis, we show that the extraction methods alter greatly the silica molecular structure, its condensation degree and the trapped organic matter. Measurements of individual phytoliths by Raman and synchrotron FTIR microspectroscopies in combination with multivariate analysis separated bilobate silica cells from prickles and long cells, based on the silica molecular structures and the fraction and composition of occluded organic matter. The variations in structure and composition of sorghum phytoliths suggest that the biological pathways leading to silica deposition vary between these cell types.
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Affiliation(s)
- Victor M. R. Zancajo
- School of Analytical Sciences Adlershof (SALSA), Humboldt-Universität zu Berlin, Berlin, Germany
- Chemistry Department, Humboldt-Universität zu Berlin, Berlin, Germany
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
- *Correspondence: Victor M. R. Zancajo, ; Janina Kneipp, ; Rivka Elbaum,
| | - Sabrina Diehn
- Chemistry Department, Humboldt-Universität zu Berlin, Berlin, Germany
| | - Nurit Filiba
- Department of Chemistry, Bar Ilan University, Ramat Gan, Israel
| | - Gil Goobes
- Department of Chemistry, Bar Ilan University, Ramat Gan, Israel
| | - Janina Kneipp
- School of Analytical Sciences Adlershof (SALSA), Humboldt-Universität zu Berlin, Berlin, Germany
- Chemistry Department, Humboldt-Universität zu Berlin, Berlin, Germany
- BAM Federal Institute for Materials Research and Testing, Berlin, Germany
- *Correspondence: Victor M. R. Zancajo, ; Janina Kneipp, ; Rivka Elbaum,
| | - Rivka Elbaum
- R. H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel
- *Correspondence: Victor M. R. Zancajo, ; Janina Kneipp, ; Rivka Elbaum,
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Johnston MR, Gascooke JR, Ellis AV, Leterme SC. Diatoms response to salinity changes: investigations using single pulse and cross polarisation magic angle spinning 29Si NMR spectra. Analyst 2018; 143:4930-4935. [PMID: 30198522 DOI: 10.1039/c8an00948a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Diatoms Thalassiosira pseudonana and Chaetoceros muelleri (Bacillariophyceae) were cultured at three different salinities (26, 36 and 46 practical salinity units (PSU)) and their silica content examined using natural abundance 29Si magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectroscopy. The samples were investigated using both single pulse (SP) and cross-polarisation (CP) MAS experiments. In addition, samples of T. pseudonana were examined using variable contact time CP MAS experiments allowing the dynamics (TSiH and T1rρH) of CP to be determined. Comparison of SP and CP results revealed a change to a less condensed silica state when diatoms were cultured at salinities away from optimal (36 PSU). Further, an increased amount of organic material (but not its composition) was determined to be present for such samples affecting CP experiments. The location of the organic material, on the diatom surface or within the frustule, was unable to be determined.
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Affiliation(s)
- M R Johnston
- Flinders Institute for Nanoscale Science and Technology, Flinders University, College of Science and Engineering, GPO Box 2100 Adelaide, South Australia 5001, Australia.
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McNair HM, Brzezinski MA, Till CP, Krause JW. Taxon-specific contributions to silica production in natural diatom assemblages. LIMNOLOGY AND OCEANOGRAPHY 2018; 63:1056-1075. [PMID: 29937577 PMCID: PMC6007990 DOI: 10.1002/lno.10754] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The metabolic activity and growth of phytoplankton taxa drives their ecological function and contribution to biogeochemical processes. We present the first quantitative, taxon-resolved silica production rates, growth rates, and silica content estimates for co-occurring diatoms along two cross-shelf transects off the California coast using the fluorescent tracer PDMPO (2-(4-pyridyl)-5-((4-(2-dimethylaminoethylaminocarbamoyl)methoxy)phenyl)oxazole), and confocal microscopy. Taxon contribution to total diatom community silica production was predominantly a function of the surface area of new frustule that each taxon created as opposed to cell abundance or frustule thickness. The influential role of surface area made large diatoms disproportionately important to community silica production over short time scales (<1 d). In some cases, large taxa that comprised only ~15% of numerical cell abundance accounted for over 50% of total community silica production. Over longer time scales relevant to bloom dynamics, the importance of surface area declines and growth rate becomes the dominant influence on contribution to production. The relative importance of surface area and growth rate in relation to silica production was modeled as the time needed for a smaller, faster-growing taxon to create more surface area than a larger, slower-growing taxon. Differences in growth rate between the taxa effected the model outcome more than differences in surface area. Shifts in relative silica production among taxa are time restricted by finite resources that limit the duration of a bloom. These patterns offer clues as to how taxa respond to their environment and the consequences for both species succession and the potential diatom contribution to elemental cycling.
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Affiliation(s)
- Heather M McNair
- Department of Ecology Evolution and Marine Biology, University of California, Santa Barbara, California, United States of America
| | - Mark A Brzezinski
- Department of Ecology Evolution and Marine Biology, University of California, Santa Barbara, California, United States of America
- Marine Science Institute, University of California, Santa Barbara, California, United States of America
| | - Claire P Till
- Chemistry Department, Humboldt State University, Arcata, California, United States of America
| | - Jeffrey W Krause
- Marine Science Institute, University of California, Santa Barbara, California, United States of America
- Dauphin Island Sea Lab, Dauphin Island, Alabama, United States of America
- Department of Marine Sciences, University of South Alabama, Mobile, Alabama, United States of America
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8
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SBA-15 materials: calcination temperature influence on textural properties and total silanol ratio. ADSORPTION 2015. [DOI: 10.1007/s10450-015-9716-2] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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9
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Bonhomme C, Gervais C, Laurencin D. Recent NMR developments applied to organic-inorganic materials. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2014; 77:1-48. [PMID: 24411829 DOI: 10.1016/j.pnmrs.2013.10.001] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2013] [Accepted: 10/17/2013] [Indexed: 06/03/2023]
Abstract
In this contribution, the latest developments in solid state NMR are presented in the field of organic-inorganic (O/I) materials (or hybrid materials). Such materials involve mineral and organic (including polymeric and biological) components, and can exhibit complex O/I interfaces. Hybrids are currently a major topic of research in nanoscience, and solid state NMR is obviously a pertinent spectroscopic tool of investigation. Its versatility allows the detailed description of the structure and texture of such complex materials. The article is divided in two main parts: in the first one, recent NMR methodological/instrumental developments are presented in connection with hybrid materials. In the second part, an exhaustive overview of the major classes of O/I materials and their NMR characterization is presented.
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Affiliation(s)
- Christian Bonhomme
- Laboratoire de Chimie de la Matière Condensée de Paris, UMR CNRS 7574, Université Pierre et Marie Curie, Paris 06, Collège de France, 11 Place Marcelin Berthelot, 75231 Paris Cedex 05, France.
| | - Christel Gervais
- Laboratoire de Chimie de la Matière Condensée de Paris, UMR CNRS 7574, Université Pierre et Marie Curie, Paris 06, Collège de France, 11 Place Marcelin Berthelot, 75231 Paris Cedex 05, France
| | - Danielle Laurencin
- Institut Charles Gerhardt de Montpellier, UMR5253, CNRS UM2 UM1 ENSCM, CC1701, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France
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