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For: Wu HL, Bagby S, van den Elsen JMH. Evolution of the Genetic Triplet Code via Two Types of Doublet Codons. J Mol Evol 2005;61:54-64. [PMID: 16059752 DOI: 10.1007/s00239-004-0224-3] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2004] [Accepted: 02/21/2005] [Indexed: 10/25/2022]
Number Cited by Other Article(s)
1
Xu H, Zhang J. On the Origin of Frameshift-Robustness of the Standard Genetic Code. Mol Biol Evol 2021;38:4301-4309. [PMID: 34043802 PMCID: PMC8476161 DOI: 10.1093/molbev/msab164] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
2
Zolyan S. On the context-sensitive grammar of the genetic code. Biosystems 2021;208:104497. [PMID: 34352327 DOI: 10.1016/j.biosystems.2021.104497] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2021] [Revised: 07/26/2021] [Accepted: 07/27/2021] [Indexed: 11/29/2022]
3
Shelah S, Strüngmann L. Infinite combinatorics in mathematical biology. Biosystems 2021;204:104392. [PMID: 33731280 DOI: 10.1016/j.biosystems.2021.104392] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 02/11/2021] [Accepted: 02/18/2021] [Indexed: 12/12/2022]
4
From Matter to Form: the Evolution of the Genetic Code as Semio-Poiesis. ACTA ACUST UNITED AC 2020. [DOI: 10.2478/lf-2020-0014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
5
Circular Tessera Codes in the Evolution of the Genetic Code. Bull Math Biol 2020;82:48. [PMID: 32248310 PMCID: PMC7128014 DOI: 10.1007/s11538-020-00724-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 03/19/2020] [Indexed: 12/18/2022]
6
Fimmel E, Strüngmann L. Linear codes and the mitochondrial genetic code. Biosystems 2019;184:103990. [PMID: 31326431 DOI: 10.1016/j.biosystems.2019.103990] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2019] [Revised: 07/09/2019] [Accepted: 07/10/2019] [Indexed: 11/29/2022]
7
Fimmel E, Michel CJ, Pirot F, Sereni JS, Strüngmann L. Mixed circular codes. Math Biosci 2019;317:108231. [PMID: 31325443 DOI: 10.1016/j.mbs.2019.108231] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2018] [Revised: 07/16/2019] [Accepted: 07/17/2019] [Indexed: 12/11/2022]
8
Zhao J, Wang J, Jiang H. Detecting Periodicities in Eukaryotic Genomes by Ramanujan Fourier Transform. J Comput Biol 2018;25:963-975. [PMID: 29963923 DOI: 10.1089/cmb.2017.0252] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
9
Fimmel E, Giannerini S, Gonzalez DL, Strüngmann L. Dinucleotide circular codes and bijective transformations. J Theor Biol 2015;386:159-65. [PMID: 26423358 DOI: 10.1016/j.jtbi.2015.08.034] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Revised: 07/30/2015] [Accepted: 08/29/2015] [Indexed: 11/20/2022]
10
Salinas DG, Gallardo MO, Osorio MI. Probable relationship between partitions of the set of codons and the origin of the genetic code. Biosystems 2014;117:77-81. [PMID: 24495914 DOI: 10.1016/j.biosystems.2014.01.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2013] [Revised: 12/26/2013] [Accepted: 01/24/2014] [Indexed: 11/16/2022]
11
Chen W, Shao Y, Chen F. Evolution of complete proteomes: guanine-cytosine pressure, phylogeny and environmental influences blend the proteomic architecture. BMC Evol Biol 2013;13:219. [PMID: 24088322 PMCID: PMC3850711 DOI: 10.1186/1471-2148-13-219] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2013] [Accepted: 10/01/2013] [Indexed: 11/18/2022]  Open
12
Salinas DG, Gallardo MO, Osorio MI. The most probable number of blocks for the partitions of the set of codons could have determined the number of standard amino acids. Biosystems 2012;109:133-6. [DOI: 10.1016/j.biosystems.2012.02.007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2011] [Revised: 09/16/2011] [Accepted: 02/28/2012] [Indexed: 10/28/2022]
13
Nikolajewa S, Friedel M, Beyer A, Wilhelm T. THE NEW CLASSIFICATION SCHEME OF THE GENETIC CODE, ITS EARLY EVOLUTION, AND tRNA USAGE. J Bioinform Comput Biol 2011;4:609-20. [PMID: 16819806 DOI: 10.1142/s0219720006001825] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2005] [Revised: 12/09/2005] [Accepted: 12/23/2005] [Indexed: 11/18/2022]
14
Zhang Z, Yu J. On the organizational dynamics of the genetic code. GENOMICS PROTEOMICS & BIOINFORMATICS 2011;9:21-9. [PMID: 21641559 PMCID: PMC5054158 DOI: 10.1016/s1672-0229(11)60004-1] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/30/2010] [Accepted: 10/26/2010] [Indexed: 11/23/2022]
15
Stability of the genetic code and optimal parameters of amino acids. J Theor Biol 2010;269:57-63. [PMID: 20955716 DOI: 10.1016/j.jtbi.2010.10.015] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2010] [Revised: 09/20/2010] [Accepted: 10/12/2010] [Indexed: 11/24/2022]
16
Novozhilov AS, Koonin EV. Exceptional error minimization in putative primordial genetic codes. Biol Direct 2009;4:44. [PMID: 19925661 PMCID: PMC2785773 DOI: 10.1186/1745-6150-4-44] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2009] [Accepted: 11/19/2009] [Indexed: 11/11/2022]  Open
17
Baranov PV, Venin M, Provan G. Codon size reduction as the origin of the triplet genetic code. PLoS One 2009;4:e5708. [PMID: 19479032 PMCID: PMC2682656 DOI: 10.1371/journal.pone.0005708] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2009] [Accepted: 04/22/2009] [Indexed: 11/26/2022]  Open
18
Koonin EV, Novozhilov AS. Origin and evolution of the genetic code: the universal enigma. IUBMB Life 2009;61:99-111. [PMID: 19117371 DOI: 10.1002/iub.146] [Citation(s) in RCA: 199] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
19
Marin M. Folding at the rhythm of the rare codon beat. Biotechnol J 2008;3:1047-57. [PMID: 18624343 DOI: 10.1002/biot.200800089] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
20
Yakhnin AV. A model for the origin of protein synthesis as coreplicational scanning of nascent RNA. ORIGINS LIFE EVOL B 2007;37:523-36. [PMID: 17882534 DOI: 10.1007/s11084-007-9108-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2006] [Accepted: 05/15/2007] [Indexed: 10/22/2022]
21
Chechetkin VR, Lobzin VV. Anticodons, frameshifts, and hidden periodicities in tRNA sequences. J Biomol Struct Dyn 2006;24:189-202. [PMID: 16928142 DOI: 10.1080/07391102.2006.10507112] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
22
Genetic code from tRNA point of view. J Theor Biol 2006;242:922-34. [PMID: 16808928 DOI: 10.1016/j.jtbi.2006.05.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2006] [Revised: 04/27/2006] [Accepted: 05/11/2006] [Indexed: 11/22/2022]
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