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For: Buhrman H, van der Gulik PT, Klau GW, Schaffner C, Speijer D, Stougie L. A realistic model under which the genetic code is optimal. J Mol Evol 2013;77:170-84. [PMID: 23877342 DOI: 10.1007/s00239-013-9571-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2012] [Accepted: 06/27/2013] [Indexed: 01/23/2023]
Number Cited by Other Article(s)
1
Wesp V, Theißen G, Schuster S. Statistical analysis of synonymous and stop codons in pseudo-random and real sequences as a function of GC content. Sci Rep 2023;13:22996. [PMID: 38151539 PMCID: PMC10752896 DOI: 10.1038/s41598-023-49626-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2023] [Accepted: 12/10/2023] [Indexed: 12/29/2023]  Open
2
Caldararo F, Di Giulio M. The genetic code is very close to a global optimum in a model of its origin taking into account both the partition energy of amino acids and their biosynthetic relationships. Biosystems 2022;214:104613. [DOI: 10.1016/j.biosystems.2022.104613] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 01/16/2022] [Accepted: 01/17/2022] [Indexed: 01/23/2023]
3
Yarus M. Evolution of the Standard Genetic Code. J Mol Evol 2021;89:19-44. [PMID: 33486549 PMCID: PMC7884377 DOI: 10.1007/s00239-020-09983-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Accepted: 12/11/2020] [Indexed: 12/13/2022]
4
Facchiano A, Di Giulio M. The genetic code is not an optimal code in a model taking into account both the biosynthetic relationships between amino acids and their physicochemical properties. J Theor Biol 2018;459:45-51. [DOI: 10.1016/j.jtbi.2018.09.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2018] [Revised: 09/04/2018] [Accepted: 09/19/2018] [Indexed: 01/22/2023]
5
Nemzer LR. Shannon information entropy in the canonical genetic code. J Theor Biol 2017;415:158-170. [DOI: 10.1016/j.jtbi.2016.12.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 11/30/2016] [Accepted: 12/12/2016] [Indexed: 11/15/2022]
6
Grosjean H, Westhof E. An integrated, structure- and energy-based view of the genetic code. Nucleic Acids Res 2016;44:8020-40. [PMID: 27448410 PMCID: PMC5041475 DOI: 10.1093/nar/gkw608] [Citation(s) in RCA: 177] [Impact Index Per Article: 22.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2016] [Revised: 06/11/2016] [Accepted: 06/17/2016] [Indexed: 12/25/2022]  Open
7
Wills PR. The generation of meaningful information in molecular systems. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2016;374:rsta.2015.0066. [PMID: 26857673 DOI: 10.1098/rsta.2015.0066] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 07/17/2015] [Indexed: 06/05/2023]
8
Lajoie MJ, Söll D, Church GM. Overcoming Challenges in Engineering the Genetic Code. J Mol Biol 2016;428:1004-21. [PMID: 26348789 PMCID: PMC4779434 DOI: 10.1016/j.jmb.2015.09.003] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Revised: 08/19/2015] [Accepted: 09/01/2015] [Indexed: 11/24/2022]
9
Gardini S, Cheli S, Baroni S, Di Lascio G, Mangiavacchi G, Micheletti N, Monaco CL, Savini L, Alocci D, Mangani S, Niccolai N. On Nature's Strategy for Assigning Genetic Code Multiplicity. PLoS One 2016;11:e0148174. [PMID: 26849571 PMCID: PMC4746209 DOI: 10.1371/journal.pone.0148174] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2015] [Accepted: 01/13/2016] [Indexed: 11/26/2022]  Open
10
Massey SE. Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint. Life (Basel) 2015;5:1301-32. [PMID: 25919033 PMCID: PMC4500140 DOI: 10.3390/life5021301] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Revised: 04/02/2015] [Accepted: 04/03/2015] [Indexed: 01/09/2023]  Open
11
Di Giulio M. The Origin of the Genetic Code: Matter of Metabolism or Physicochemical Determinism? J Mol Evol 2013;77:131-3. [DOI: 10.1007/s00239-013-9593-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Accepted: 10/18/2013] [Indexed: 12/27/2022]
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