Evaluation of marine bacteroidetes-specific primers for microbial diversity and dynamics studies

Effects of potassium monopersulfate on nitrification activity and bacterial community structure of sponge biocarrier biofilm in Litopenaeus vannamei aquaculture system

Effects of potassium monopersulfate (KMPS) on the nitrification activity, aquacultural water quality and bacterial community structure of sponge biocarriers with pre-cultured biofilm (SBBF) were analysed through shaking flask experiments and L. vannamei aquaculture experiments. Changes in the ammonia oxidation rate (AOR) and nitrite oxidation rate (NOR) of SBBF under six KMPS concentration treatments (0, 1, 2, 3, 4 and 5 mg/L) were studied. The results showed that the AOR and NOR of SBBF treated with high concentrations of KMPS (3, 4 and 5 mg/L) were significantly lower than those of the control group (CK) (p < 0.05). However, compared with the first dosing of NH4Cl and NaNO2, the inhibition of AOR and NOR by KMPS on AOR and NOR was weakened after the second and third dosing times. That is, AOR and NOR can recover partially or completely over time. The L. vannamei aquaculture experiment was performed using four concentrations of KMPS (0, 2, 4 and 8 mg/L). The results showed that with increasing KMPS dosage, the average and peak concentrations of NH4+-N and NO2--N in each treatment significantly increased (P < 0.05), and the final body weight of shrimp significantly decreased (P < 0.05). Furthermore the highest dose (8.0 mg/L) of KMPS reduced the survival rate by 9.33% compared to the CK. High-throughput sequencing analysis of the biofilm structure showed that the relative abundances of Nitrospirota, Nitrosomonas and Nitrococcus, which are related to nitrogen cycling, and beneficial bacteria including Firmicutes and Bacilli decreased with the addition of KMPS (p < 0.05).

Comparison of nitrification performance in SBR and SBBR with response to NaCl salinity shock: Microbial structure and functional genes

Ammonia removal by nitrifiers at the extremely high salinity poses a great challenge for saline wastewater treatment. Sequencing batch reactor (SBR) was conducted with a stepwise increase of salinity from 10 to 40 g-NaCl·L-1, while sequencing batch biofilm reactor (SBBR) with one-step salinity enhancement, their nitrification performance, microbial structure and interaction were evaluated. Both SBR and SBBR can achieve high-efficiency nitrification (98% ammonia removal) at 40 g-NaCl·L-1. However, SBBR showed more stable nitrification performance than SBR at 40 g-NaCl·L-1 after a shorter adaptation period of 4-15 d compared to previous studies. High-throughput sequencing and metagenomic analysis demonstrated that the abundance and capability of conventional ammonia-oxidizing bacteria (Nitrosomonas) were suppressed in SBBR relative to SBR. Gelidibacter, Anaerolineales were the predominant genus in SBBR, which were not found in SBR. NorB and nosZ responsible for reducing NO to N2O and reducing N2O to N2 respectively had s strong synergistic effect in SBBR. This study will provide a valuable reference for the startup of nitrification process within a short period of time under the extremely high NaCl salinity.

Comparison of moving bed biofilm reactor and bio-contact oxidation reactor start-up with heterotrophic nitrification-aerobic denitrification bacteria and activated sludge inoculation under high ammonia nitrogen conditions

To overcome poor ammonia tolerance and removal performance of bio-contact oxidation (BCO) reactor inoculated with activated sludge for high-ammonia nitrogen (NH4+-N) chemical wastewater treatment, this study compared inoculating heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria in moving bed biofilm reactor (MBBR) with activated sludge inoculation in BCO reactor under simulated high NH4+-N conditions. Results revealed that MBBR achieved faster biofilm formation (20 days vs. 100 days for BCO) with notable advantages: 27.6 % higher total nitrogen (TN) and 29.9 % higher NH4+-N removal efficiency than BCO. Microbial analysis indicated optimal enrichment of the key nitrogen removal (NR) bacterium Alcaligenes, leading to increased expression of NR enzymes hydroxylamine reductase, ensuring the superior NR efficiency of the MBBR. Additionally, functional enzymes and genes analysis speculated that the NR pathway in MBBR was: NH4+-N → NH2OH → NO3--N → NO2--N → NO → N2O → N2. This research offers a practical and theoretical foundation for extending HN-AD bacteria-inoculated MBBR processes.

Temperature dependence of nitrification in a membrane-aerated biofilm reactor

The membrane-aerated biofilm reactor (MABR) is a novel method for the biological treatment of wastewaters and has been successfully applied for nitrification. To improve the design and adaptation of MABR processes for colder climates and varying temperatures, the temperature dependence of a counter-diffusional biofilm's nitrification performance was investigated. A lab-scale MABR system with silicone hollow fibre membranes was operated at various temperatures between 8 and 30°C, and batch tests were performed to determine the ammonia oxidation kinetics. Biofilm samples were taken at 8 and 24°C and analysed with 16S rRNA sequencing to monitor changes in the microbial community composition, and a mathematical model was used to study the temperature dependence of mass transfer. A high nitrification rate (3.08 g N m^-2 d^-1) was achieved at 8°C, and temperature dependence was found to be low (θ = 1.024-1.026) compared to suspended growth processes. Changes in the community composition were moderate, Nitrospira defluvii remaining the most dominant species. Mass transfer limitations were shown to be largely responsible for the observed trends, consistent with other biofilm processes. The results show that the MABR is a promising technology for low temperature nitrification, and appropriate management of the mass transfer resistance can optimise the process for both low and high temperature operation.

Bioaugmentation with Acinetobacter sp. TAC-1 to enhance nitrogen removal in swine wastewater by moving bed biofilm reactor inoculated with bacteria

To enhance the performance of moving bed biofilm reactor (MBBR) inoculated with heterotrophic nitrification-aerobic denitrification (HN-AD) bacteria, bioaugmentation with Acinetobacter sp. TAC-1 was firstly employed and then the treatment performance for real swine wastewater was presented in this study. Results indicated that NH₄⁺-N and TN removal rates of bioaugmented reactor were significantly improved from 16.53 mg/L/h and 16.15 mg/L/h to 24.58 mg/L/h and 24.45 mg/L/h, respectively. The efficient removal performance (NH₄⁺-N 95.01%, TN 86.40%) for real swine wastewater was achieved within 24 h. Microbial analysis indicated that the composition of functional bacteria varied with the introduction of Acinetobacter sp. TAC-1, especially the abundance of Acinetobacter, Paracoccus and Rhodococcus related to the nitrogen removal. Furthermore, bioaugmentation with Acinetobacter sp. TAC-1 increased abundance of enzymes and functional genes (nirS, nirK and norZ) corresponding to denitrification that may be responsible for the enhanced nitrogen removal performance.

Unravelling the biodegradation performance and mechanisms of acid orange 7 by aerobic granular sludge at different salinity levels

Azo dyes wastewater is characterized by high-salinity, however, the biodegradation performance and mechanisms of azo dyes by aerobic granular sludge (AGS) under different salinity levels are still unclear. Herein, the results showed that the reactor performance was almost unaffected at low-salinity levels (0.5%-1.0% salinity), and the removal efficiency of acid orange 7 (AO7) was increased by 2.6%-19.1%, possibly due to the excessive secretion of extracellular polymeric substances (EPS) and the enrichment of functional bacteria. Nevertheless, the microbial cell viability was negatively affected by high-salinity level (2.0% salinity), leading to the deterioration of AO7 and nutrient removal efficiencies. The AO7 removal was achieved by rapid adsorption and slow biodegradation. The biodegradation pathway indicated that AO7 was gradually mineralized in the AGS system through desulfurization, deamination, decarboxylation and hydroxylation. Altogether, this work provides an important reference for the application of AGS technology for treating saline azo dye wastewaters.

Occurrence of veterinary drugs and resistance genes during anaerobic digestion of poultry and cattle manures

In the present paper, the mesophilic (35 °C) and thermophilic (55 °C) biomethanization of poultry and cattle manures were investigated using biochemical methane potential (BMP) tests. Specific methane production (SMP), 24 pharmaceutical compounds (PhACs), and five antibiotic resistance genes (ARGs) (bla_KPC, ermB, qnrS, sul1 and tetW) together with the microbial community were analyzed. Mesophilic BMP tests resulted in the highest SMP when poultry manure was used (285.5 mL CH₄/g VSS with poultry vs 239.6 mL CH₄/g VSS with cattle manure) while thermophilic temperatures led to the highest SMP with cattle manure (231.2 mL CH₄/g VSS with poultry vs 238.0 mL CH₄/g VSS with cattle manure). Higher removals of veterinary pharmaceuticals were detected at 55 °C with both manures indicating that thermophilic digestion is better suited for the removal of these compounds. Tylosin, tilmicosin, chlortetracycline, and sulfamethoxazole presented removals higher than 50%, being the first two completely removed under mesophilic and thermophilic conditions. When comparing the relative abundance of ARGs at the end of each treatment, the most significant removal was found for qnrS which was not detected after the anaerobic treatment. The remaining ARGs did not suffer significant changes. Finally, microbial composition analysis showed that temperature affected the final microbial population more than the microorganisms present in the substrate or inoculum.

Treatment of decentralized low-strength livestock wastewater using microcurrent-assisted multi-soil-layering systems: performance assessment and microbial analysis

Discharge of decentralized livestock wastewater without effective treatment has become a common problem in rural areas, threatening the regional water environment. A new microcurrent-assisted multi-soil-layering (MSL) system was developed for treating rural decentralized livestock wastewater. The results showed the highest removal rates of chemical oxygen demand (COD) and total phosphorus (TP) in MSL systems reached 95.45% and 92.0%, respectively. The removal rate of total nitrogen (TN) in MSL systems ranged from 60 to 75%. The bacterial diversity changes among MSL systems showed that high-level height of bottom submergence had a positive effect on the abundance of denitrifying bacteria, while low-level height of bottom submergence had a positive impact on the abundance of nitrifying bacteria. The effect of low-level external voltage on bacterial abundance was better than that of high-level external voltage. Both high- and low-level influent C/N ratios had no significant effect on bacterial abundance. The metabolism and activity of microorganisms were promoted with microcurrent stimulation from the perspective of increased bacterial abundance in MSL systems with improved treatment performance.

Enhanced aerobic granular sludge by static magnetic field to treat saline wastewater via simultaneous partial nitrification and denitrification (SPND) process

Saline wastewater poses a threat to biological nitrogen removal. This study investigated whether and how static magnetic field (SMF) can improve the salt-tolerance of aerobic granular sludge (AGS) in two simultaneous partial nitrification and denitrification (SPND) reactors. Results confirmed that the SMF improved the mean size and settleability of granules, stimulated secretion of extracellular polymeric substances with high protein content, in turn enhancing the aerobic granulation. Although high salt stress inhibited functional microorganisms, the SMF maintained better SPND performance with average COD removal, TN removal and nitrite accumulation ratio finally recovering to 100%, 72.9% and 91.1% respectively. High throughput sequencing revealed that functional bacteria evolved from Paracoccus to halotolerant genera Xanthomarina, Thauera, Pseudofulvimonas and Azoarcus with stepwise increasing salinity. The enhanced salt-tolerance may be because the SMF promoted the activity of these halotolerant bacteria. Therefore, this study proposes an economic, effective and environmental biotechnology for saline wastewater treatment.

Enhancing robustness of activated sludge with Aspergillus tubingensis as a protective backbone structure under high-salinity stress

High salt seriously destroys the stable interactions among key functional species of activated sludge, which in turn limits the performance of high-salinity wastewater biological treatment. In this study, pelletized Aspergillus tubingensis (AT) was used as a protective backbone structure for activated sludge under high-salinity stress, and a superior salt-tolerant AT-based aerobic granular sludge (AT-AGS) was developed. Results showed that the COD and NH₄⁺-N removal efficiencies of salt-domesticated AT-AGS were 11.83% and 7.18% higher than those of salt-domesticated flocculent activated sludge (FAS) at 50 gNaCl/L salinity. Compared to the salt-domesticated FAS, salt-domesticated AT-AGS showed stronger biomass retention capacity (with a MLVSS concentration of 7.92 g/L) and higher metabolic activity (with a dehydrogenase activity of 48.06 mgTF/gVSS·h). AT modified the extracellular polymeric substances pattern of microbes, and the total extracellular polysaccharide content of AT-AGS (80.7 mg/gVSS) was nearly twice than that of FAS (46.3 mg/gVSS) after salt-domestication, which demonstrated that extracellular polysaccharide played a key role in keeping the system stable. The high-throughput sequencing analysis illustrated that AT contributed to maintain the microbial richness and diversity of AT-AGS in high-salt environment, and Marinobacterium (with a relative abundance of 32.04%) became the most predominant genus in salt-tolerant AT-AGS. This study provided a novel insight into enhancing the robustness of activated sludge under high-salinity stress.

Response of wastewater treatment performance, microbial composition and functional genes to different C/N ratios and carrier types in MBBR inoculated with heterotrophic nitrification-aerobic denitrification bacteria

To operate the moving bed biofilm reactor inoculated with HN-AD bacteria (B-MBBR) instead of activated sludge for livestock and poultry breeding wastewater (LPBW) disposal in most efficient manner, nitrogen removal (NR) efficiency and microbial composition of two MBBRs with different carrier types under various C/N ratios were explored. Results indicated that the performance on NR greatly various in different carrier types under various C/N ratios. Attributing to the bacterial protection provided by the porous structure of polyvinyl alcohol (PVA) gel, MBBR using PVA gel as the carrier exhibited a more stable NR performance (range from 78.05% to 83.76%) versus that using Kaldnes (K1) as the carrier (range from 78.05% to 83.76%). Besides, microbial analysis indicated that MBBR with PVA gel as the carrier is conducive to the growth of oligotrophic and HN-AD bacteria (Paracoccus and Acinetobacter), and the highest relative abundance was 16.37% at C/N ratio of 6.

Effect of increasing salinity and low C/N ratio on the performance and microbial community of a sequencing batch reactor

The purpose of this study was to investigate the effects of increasing salinity on the performance and microbial community structure in a sequencing batch reactor (SBR) treating low C/N ratio wastewater. The SBR was subjected to a gradual increased salinity from 0 wt% to3.0 wt% under low Chemical Oxygen Demand (COD)/N ratio, operating for 80 days. The study results indicated that high salinity decreased the removal efficiency of ammonium (NH4+-N) from 77.09% (1.0 wt%) to 45.7% (3.0wt%). The organic matter removal are not significantly affected by the high salinity. Non-metric Multi-Dimensional Scaling (NMDS) analysis showed that the gradual increased salinity altered the overall bacterial community structure, and low salinity (1wt%) promoted the bacterial diversity, while high salinity (2 and 3 wt%) significantly decreased the bacterial diversity in low C/N ratio activated sludge system. Further analysis revealed that two genera related to nitrification process (unclassified-Nitrosomonadales and g-Nitrospira) were inhibited, while a genus related to organic removal (Piscicoccus) and three genera related to denitrification (Rodobacteraceae, Denitromonas and Hyphomicrobium) increased significantly at a salinity of 3 wt%. This study provides insights of shifts in the bacteria community under the stress of high salinity in low C/N ratio of activated sludge systems.

Deciphering of organic matter and nutrient removal and bacterial community in three sludge treatment wetlands under different operating conditions

Sludge treatment wetlands (STWs) can effectively stabilize sludge, but the microbial community structure in this process is not well characterized. The purpose of this study was to investigate the characteristics of organic matter and nutrient removal and bacterial community in sludge treatment wetlands for treating sewage sludge. Three STWs units included unit STW1 with aeration tubes, unit STW2 with aeration tubes and reed planting and unit STW3 with reed planting. The degradation of organic matter and nutrient, sludge dewatering performance and microbial community dynamics in STWs were examined in feeding and resting periods. Our results showed that during the entire process of the experiment, total solids (TS) in STWs increased to 24-31%, volatile solids (VS) in STWs reduced to 43-47%, while the total kjeldahl nitrogen (TKN) and total phosphorous (TP) concentrations in STWs decreased to 25.1-35.5 mg/g d. w and 5.4-6.2 mg/g d. w. However, the removal efficiencies of organic matter and nutrient in STWs in the feeding period were higher than those in the resting period. Meanwhile, unit STW2 has the best removal performance in organic matter and nutrients during the whole experiment. Microbial community analysis using Illumina MiSeq sequencing technology showed that growth of plants in STWs improved bacterial diversity and richness which corresponded to high removal rates of organic matter and nutrient. Besides, principal coordinate analysis (PCoA) showed that the bacterial community composition in STWs obviously altered between the feeding and the resting periods.

Effect of aquaculture salinity on nitrification and microbial community in moving bed bioreactors with immobilized microbial granules

The novel immobilized microbial granules (IMG) shows a significant effect of nitrification for freshwater aquaculture. However, there is lack of evaluation study on the performance of nitrification at high salinity due to the concentration of recycled water or seawater utilization. A laboratory scale moving bed bioreactor (MBBR) with IMG was tested on recycled synthetic aquaculture wastewater for the nitrification at 2.5 mg/L NH₃-N daily. The results indicated that IMG showed a high salinity tolerance and effectively converted ammonia to nitrate up to 92% at high salinity of 35.0 g/L NaCl. As salinity increased from near zero to 35.0 g/L, the microbial activity of nitrite oxidation bacteria (NOB) in the IMG decreased by 86.32%. The microbial community analysis indicated that salinity significantly influenced the community structure. It was found that Nitrosomonas sp. and Nitrospira sp. were the dominant genera for ammonia oxidation bacteria (AOB) and NOB respectively at different salinity levels.

Effect of the gradual increase of salt on stability and microbial diversity of granular sludge and ammonia removal

Two sequential batch reactors were operated, aiming at forming aerobic granular sludge and studying the effects of the gradual increase of the NaCl concentration on the granule. structure and microbial diversity, and on the efficiency of ammonia removal. The reactors were fed with ammonia-enriched synthetic effluent and 5 g L^-1 of NaCl per week were applied. A decrease in the size of the granules was observed until they were completely disintegrated as the salt concentration increased up to 10 g L^-1. However, the ammonia removal efficiency remained high in all the salinities applied. By sequencing the 16S rRNA amplicon gene, the microbial community structure allowed the verification of the presence of several genera affiliated with the bacteria that perform both heterotrophic nitrification and aerobic denitrification, besides those involved in the conventional nitrification and denitrification and the ANAMMOX process. Salinity affected the microbial population related to the formation and stability of the granules.

Seasonal dynamics of bacterial communities associated with antibiotic removal and sludge stabilization in three different sludge treatment wetlands

In this study, antibiotics removal, sludge stabilization and the change in the bacterial community in sludge treatment wetlands (STWs) were investigated in different seasons. Pilot-scale STWs were characterized for sludge stabilization and the fate of antibiotics in surplus sludge applied during different seasons in three different configurations. The three configurations were unit S1 with ventilation, unit S2 with ventilation and reed plantings and unit S3 with reed plantings. The antibiotics used were ciprofloxacin, azithromycin and oxytetracycline and their degradation, degree of sludge stabilization and bacterial community dynamics were monitored. The results showed that the removal of antibiotics and reduction in the amount of organics in the planted units S2 and S3 were higher than those in the unplanted unit S1, especially in summer. The antibiotic removal efficiency in the planted unit S2, which was equipped with aeration tubes, was the highest over the entire test period. Bacterial community was analyzed by IlluminaMiSeq sequencing of the 16SrRNA gene, showed that the presence of plants in STWs enhanced microbial diversity and richness which promote the removal of antibiotics and sludge stabilization. Proteobacteria, Bacteroidetes and Firmicutes were dominant in the bacterial communities, with Thiobacillus, Dechloromonas and Pseudomonas occurring as dominant genera.

Delineation of ecologically distinct units of marine Bacteroidetes in the Northwestern Mediterranean Sea

Bacteroidetes is one of the dominant phyla of ocean bacterioplankton, yet its diversity and population structure is poorly understood. To advance in the delineation of ecologically meaningful units within this group, we constructed near full-length 16S rRNA gene clone libraries from contrasting marine environments in the NW Mediterranean. Based on phylogeny and the associated ecological variables (depth and season), 24 different Bacteroidetes clades were delineated. By considering their relative abundance (from iTag amplicon sequencing studies), we described the distribution patterns of each of these clades, delimiting them as Ecologically Significant Taxonomic Units (ESTUs). Spatially, there was almost no overlap among ESTUs at different depths. In deep waters there was predominance of Owenweeksia, Leeuwenhoekiella, Muricauda-related genera, and some depth-associated ESTUs within the NS5 and NS2b marine clades. Seasonally, multi-annual dynamics of recurring ESTUs were present with dominance of some ESTUs within the NS4, NS5 and NS2b marine clades along most of the year, but with variable relative frequencies between months. A drastic change towards the predominance of Formosa-related ESTUs and one ESTU from the NS5 marine clade was typically present after the spring bloom. Even though there are no isolates available for these ESTUs to determine their physiology, correlation analyses identified the environmental preference of some of them. Overall, our results suggest that there is a high degree of niche specialisation within these closely related clades. This work constitutes a step forward in disentangling the ecology of marine Bacteroidetes, which are essential players in organic matter processing in the oceans.

On-board saline black water treatment by bioaugmentation original marine bacteria with Pseudoalteromonas sp. SCSE709-6 and the associated microbial community

To reduce fresh water load on ships, seawater can be used for toilet flushing on-board. And saline black water was treated on-site by bioaugmentation original marine bacteria with Pseudoalteromonas sp. SCSE709-6 (P. sp. SCSE709-6) to prevent marine pollution. In the batch experiments, P. sp. SCSE709-6 was effective in nutrient removal, which was not closely related to the amount of inoculation. In the on-board continuous experiments, the systems inoculated with P. sp. SCSE709-6 possessed excellent TP removal ability (removal rate: 80.93% for T3 and 88.39% for T4). The inoculum of P. sp. SCSE709-6 changed the microbial community structure and increased the similarity of microbial communities. P. sp. SCSE709-6 had a significant influence on the performance and microbial community of the systems. This study strongly proposes that the P. sp. SCSE709-6 is a promising alternative in saline black water treatment, which has great significance to the practice of on-board seawater flushing toilet.

Comparison between kinetics of autochthonous marine bacteria in activated sludge and granular sludge systems at different salinity and SRTs

Biological nutrient removal performances and kinetics of autochthonous marine biomass in forms of activated sludge and aerobic granular sludge were investigated under different salinity and sludge retention time (SRT). Both the biomasses, cultivated from a fish-canning wastewater, were subjected to stepwise increases in salinity (+2 gNaCl L^-1), from 30 gNaCl L^-1 up to 50 gNaCl L^-1 with the aim to evaluate the maximum potential in withstanding salinity by the autochthonous marine biomass. Microbial marine species belonging to the genus of Cryomorphaceae and of Rhodobacteraceae were found dominant in both the systems at the maximum salinity tested (50 gNaCl L^-1). The organic carbon was removed with a yield of approximately 98%, irrespective of the salinity. Similarly, nitrogen removal occurred via nitritation-denitritation and was not affected by salinity. The ammonium utilization rate and the nitrite utilization rate were approximately of 3.60 mgNH₄-N gVSS^-1h^-1 and 10.0 mgNO₂-N gVSS^-1h^-1, respectively, indicating a high activity of nitrifying and denitrifying bacteria. The granulation process did not provide significant improvements in the nutrients removal process likely due to the stepwise salinity increase strategy. Biomass activity and performances resulted affected by long SRT (27 days) due to salt accumulation within the activated sludge flocs and granules. In contrast, a lower SRT (14 days) favoured the discharge of the granules and flocs with higher inert content, thereby enhancing the biomass renewing. The obtained results demonstrated that the use of autochthonous-halophilic bacteria represents a valuable solution for the treatment of high-strength carbon and nitrogen saline wastewater in a wide range of salinity. Besides, the stepwise increase in salinity and the operation at low SRT enabled high metabolic activity and to avoid excessive accumulation of salt within the biomass aggregates, limiting their physical destructuration due to the increase in loosely-bound exopolymers.

Effect of salinity on removal performance and activated sludge characteristics in sequencing batch reactors

The removal performance, activated sludge characteristics and microbial community in sequencing batch reactors (SBRs) were studied at salinity ranging from 0 to 20 g/L. Results showed that salinity deteriorated the removal performance. Removal rate of ammonium (NH₄⁺-N), total phosphorus (TP) and chemical oxygen demand (COD) were gradually dropped from 95.34%, 93.58% and 94.88% (0 g/L) to 62.98%, 55.64% and 55.78% (20 g/L), respectively. The removals of NH₄⁺-N and TP were mainly influenced during aerobic phase. Besides, salinity increased the extracellular polymeric substances (EPS) content of activated sludge, decreased the content of protein (PN) and loosely bound extracellular polymeric substances (LB-EPS) which led to better settleability of activated sludge. Moreover, salinity inhibited the dehydrogenase activity (DHA) of activated sludge. Sequence analysis illustrated Zoogloea and Thioclava were predominant at 0 and 20 g/L salinity, respectively. The difference of microbial community under high salinity was likely caused by the variation of richness.

Denitrification processes and microbial communities in a sequencing batch reactor treating nanofiltration (NF) concentrate from coking wastewater

A biological denitrifying process was employed for the treatment of nanofiltration (NF) concentrate with high conductivity, which was generated from coking wastewater in a sequencing batch reactor (SBR). The results showed that the average removal efficiencies of chemical oxygen demand (COD), total nitrogen (TN) and nitrate were 47.6%, 61.1% and 94.6%, respectively. Different microbial communities were identified by sequencing the V1-V3 region of the 16S rRNA gene using the MiSeq platform, showing that the most abundant bacterial phylum in the SBR system was Proteobacteria, with the subclasses β-Proteobacteria and α-Proteobacteria being dominant. The key microorganisms responsible for denitrification belonged to the genera Thauera, Hyphomicrobium, Methyloversatilis, Hydrogenophaga, Ignavibacterium, Rubrivivax and Parvibaculum. Quantitative real-time polymerase chain reaction was used to assess the absolute abundance of microbial genera, using 16S rRNAs and denitrifying genes such as narG, nirS, nirK, nosZ, in both SBR start-up and stable operation. The abundances of narG, nirK and nosZ were lower during stable operation than those during the start-up period. The abundance of nirS at a level of 10⁴-10⁵copies/ng in DNA was much higher than that of nirK, thus being the dominant functional gene in nitrite reduction.

Assessing the performance and microbial structure of biofilms adhering on aerated membranes for domestic saline sewage treatment

MABR for effective treatment of domestic saline sewage and its microbial community.

Effects of pressurized aeration on organic degradation efficiency and bacterial community structure of activated sludge treating saline wastewater

This study was aimed to investigate the effect of moderate pressure on organic matter removal efficiency and microbial population of activated sludge treating saline wastewater. The activated sludge was cultivated with a gradual increase of salt concentrations under gage pressure of 0.3MPa for 71days. Microbial diversities of activated sludge sampled in different stages of domestication were investigated by Illumina sequencing technology. Results showed that pressurized aeration could improve the treatment efficiency and the dehydrogenase activity (DHA) of activated sludge, especially at high salinity (35, 50gNaClL^-1). Bacterial richness and community diversity of activated sludge in the pressurized reactor were significantly higher than those in the control reactor. Microbial population structures were quite different between the two reactors. More species originating from fresh wastewater biological treatment process would survive and remain in pressurized activated sludge.

Bacterial diversity in the South Adriatic Sea during a strong, deep winter convection year

The South Adriatic Sea is the deepest part of the Adriatic Sea and represents a key area for both the Adriatic Sea and the deep eastern Mediterranean. It has a role in dense water formation for the eastern Mediterranean deep circulation cell, and it represents an entry point for water masses originating from the Ionian Sea. The biodiversity and seasonality of bacterial picoplankton before, during, and after deep winter convection in the oligotrophic South Adriatic waters were assessed by combining comparative 16S rRNA sequence analysis and catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). The picoplankton communities reached their maximum abundance in the spring euphotic zone when the maximum value of the chlorophyll a in response to deep winter convection was recorded. The communities were dominated by Bacteria, while Archaea were a minor constituent. A seasonality of bacterial richness and diversity was observed, with minimum values occurring during the winter convection and spring postconvection periods and maximum values occurring under summer stratified conditions. The SAR11 clade was the main constituent of the bacterial communities and reached the maximum abundance in the euphotic zone in spring after the convection episode. Cyanobacteria were the second most abundant group, and their abundance strongly depended on the convection event, when minimal cyanobacterial abundance was observed. In spring and autumn, the euphotic zone was characterized by Bacteroidetes and Gammaproteobacteria. Bacteroidetes clades NS2b, NS4, and NS5 and the gammaproteobacterial SAR86 clade were detected to co-occur with phytoplankton blooms. The SAR324, SAR202, and SAR406 clades were present in the deep layer, exhibiting different seasonal variations in abundance. Overall, our data demonstrate that the abundances of particular bacterial clades and the overall bacterial richness and diversity are greatly impacted by strong winter convection.

Validation of a new catalysed reporter deposition-fluorescence in situ hybridization probe for the accurate quantification of marine Bacteroidetes populations

Catalysed reporter deposition-fluorescence in situ hybridization (CARD-FISH) is a powerful approach to quantify bacterial taxa. In this study, we compare the performance of the widely used Bacteroidetes CF319a probe with the new CF968 probe. In silico analyses and tests with isolates demonstrate that CF319a hybridizes with non-Bacteroidetes sequences from the Rhodobacteraceae and Alteromonadaceae families. We test the probes' accuracy in 37 globally distributed marine samples and over two consecutive years at the Blanes Bay Microbial Observatory (NW Mediterranean). We also compared the CARD-FISH data with the Bacteroidetes 16S rRNA gene sequences retrieved from 27 marine metagenomes from the TARA Oceans expedition. We find no significant differences in abundances between both approaches, although CF319a targeted some unspecific sequences and both probes displayed different abundances of specific Bacteroidetes phylotypes. Our results demonstrate that quantitative estimations by using both probes are significantly different in certain oceanographic regions (Mediterranean Sea, Red Sea and Arabian Sea) and that CF968 shows seasonality within marine Bacteroidetes, notably large differences between summer and winter that is overlooked by CF319a. We propose CF968 as an alternative to CF319a for targeting the whole Bacteroidetes phylum since it has better coverage, greater specificity and overall better quantifies marine Bacteroidetes.

Spatial and temporal variability among marine Bacteroidetes populations in the NW Mediterranean Sea

The abundance and structure of Bacteroidetes populations at diverse temporal and spatial scales were investigated in the Northwestern Mediterranean Sea. At a temporal scale, their relative abundance exhibited a marked seasonality, since it was higher in spring and decreased in winter. Similarly, Bacteroidetes community structure encompassed three main groups (winter, spring and summer-fall), which mimicked global bacterioplankton seasonality. At the spatial scale, relative abundances were similar in all surface samples along an inshore-offshore transect, but they decreased with depth. Analysis of the community structure identified four markedly different groups mostly related to different depths. Interestingly, seasonal changes in abundance and community structure were not synchronized. Furthermore, richness was higher when Bacteroidetes were less abundant. The variability of Bacteroidetes contributions to community structure in the temporal and spatial scales was correlated with different environmental factors: day length was the most important factor at the temporal scale, and salinity at the spatial scale. The community composition in terms of phylotypes changed significantly over time and along the depth gradients, but season or depth-specific phylogenetic clusters were not identified. Delineation of coherent Bacteroidetes sub-clusters should help to uncover higher resolution patterns within Bacteroidetes, and explore associations with environmental and biological variables.