Influence of Macrofaunal Burrows on Extracellular Enzyme Activity and Microbial Abundance in Subtropical Mangrove Sediment

Litterfall and Associated Macrozoobenthic of Restored Mangrove Forests in Abandoned Aquaculture Ponds

Mangrove restoration projects are now widely established, aiming to regain the carbon benefit of the mangrove ecosystem that is essential for climate change mitigation. This study aimed to investigate mangrove litter as the source of carbon in restored mangrove forests in Perancak Estuary, Bali, Indonesia, which previously experienced substantial mangrove loss due to shrimp aquaculture development. We assessed the production and decomposition of mangrove litter and associated macrozoobenthic biodiversity in restored forests with plantation age ≥14 years and intact mangrove forests as the reference. The monthly production of three groups of mangrove litter (leaf, reproductive, and wood) was assessed over 12 months. A leaf litter decomposition experiment was performed to inspect the interspecific and disturbance history variation in organic matter formation among four major mangrove species: Rhizophora apiculata, Bruguiera gymnorhiza, Avicennia marina, and Sonneratia alba. Our results showed that annual litterfall production from restored and intact mangroves in Perancak Estuary were 13.96 and 10.18 Mg ha−1 year−1, which is equivalent to approximately 6282 and 4581 kg C ha−1 year−1 of annual litterfall carbon sink, respectively. Although restored mangroves had significantly higher plant litterfall production than intact mangroves, no significant difference was detected in leaf litter decomposition and macrozoobenthic biodiversity between these forest types.

Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota

Thorarchaeota are a new archaeal phylum within the Asgard superphylum, whose ancestors have been proposed to play possible ecological roles in cellular evolution. However, little is known about the lifestyles of these uncultured archaea. To provide a better resolution of the ecological roles and metabolic capacity of Thorarchaeota, we obtained Thorarchaeota genomes reconstructed from metagenomes of different depth layers in mangrove and mudflat sediments. These genomes from deep anoxic layers suggest the presence of Thorarchaeota with the potential to degrade organic matter, fix inorganic carbon, reduce sulfur/sulfate and produce acetate. In particular, Thorarchaeota may be involved in ethanol production, nitrogen fixation, nitrite reduction, and arsenic detoxification. Interestingly, these Thorarchaeotal genomes are inferred to contain the tetrahydromethanopterin and tetrahydrofolate Wood-Ljungdahl (WL) pathways for CO₂ reduction, and the latter WL pathway appears to have originated from bacteria. These archaea are predicted to be able to use various inorganic and organic carbon sources, possessing genes inferred to encode ribulose bisphosphate carboxylase-like proteins (normally without RuBisCO activity) and a near-complete Calvin-Benson-Bassham cycle. The existence of eukaryotic selenocysteine insertion sequences and many genes for proteins previously considered eukaryote-specific in Thorarchaeota genomes provide new insights into their evolutionary roles in the origin of eukaryotic cellular complexity. Resolving the metabolic capacities of these enigmatic archaea and their origins will enhance our understanding of the origins of eukaryotes and their roles in ecosystems.