Cellulase-Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems

Preliminary construction of a microecological evaluation model for uranium-contaminated soil

With the extensive development of nuclear energy, soil uranium contamination has become an increasingly prominent problem. The development of evaluation systems for various uranium contamination levels and soil microhabitats is critical. In this study, the effects of uranium contamination on the carbon source metabolic capacity and microbial community structure of soil microbial communities were investigated using Biolog microplate technology and high-throughput sequencing, and the responses of soil biochemical properties to uranium were also analyzed. Then, ten key biological indicators as reliable input variables, including arylsulfatase, biomass nitrogen, metabolic entropy, microbial entropy, Simpson, Shannon, McIntosh, Nocardioides, Lysobacter, and Mycoleptodisus, were screened by random forest (RF), Boruta, and grey relational analysis (GRA). The optimal uranium-contaminated soil microbiological evaluation model was obtained by comparing the performance of three evaluation methods: partial least squares regression (PLS), support vector regression (SVR), and improved particle algorithm (IPSO-SVR). Consequently, partial least squares regression (PLS) has a higher R2 (0.932) and a lower RMSE value (0.214) compared to the other. This research provides a new evaluation method to describe the relationship between soil ecological effects and biological indicators under nuclear contamination.

Forest management practices change topsoil carbon pools and their stability

Forest management may lead to changes in soil carbon and its stability, and the effects are variable owing to the differences in management methods. Our study aimed to determine the impacts of different forest management practices on soil carbon pools and their stability. We chose a natural oak forest, where different forest-management strategies have been practiced. Forest management strategies included cultivating target trees by removing interference trees (CNFM), optimizing the forest spatial structure by the structural parameters (SBFM), reducing the stand density by harvesting timber (SFCS), and using unmanaged forests as controls (NT). Topsoil (depth of 0-10 cm) was collected after eight years of forest management. Soil organic carbon (SOC), labile organic carbon components and the microbial community were determined, and SOC chemical compositions were assessed by nuclear magnetic resonance. The CNFM and SFCS strategies had smaller dissolved organic carbon contents than the NT and SBFM strategies, and the CNFM strategy increased the ratio of alkyl C and o-alkyl C, indicating that the SOC was more stable. Forest management strategies changed the SOC and its labile C pool by adjusting the soil total nitrogen,β-glucosidase, cellobiohydrolase, fine-root carbon and fungal operational taxonomic units, and the SOC chemical compositions were influenced by the number of fungal species. These findings suggest that the soil organic carbon decreased, but its stability increased in the natural forest under the practice of cultivating target trees by removing interference trees. The SOC pools could be regulated by soil nitrogen, enzyme activity, fine roots, and fungi, while soil fungi could affect SOC stability.

Screening of Cellulolytic Bacteria from Various Ecosystems and Their Cellulases Production under Multi-Stress Conditions

Cellulose represents the most abundant component of plant biomass on earth; it is degraded by cellulases, specific enzymes produced by microorganisms. However, cellulases of bacterial origin attract more interest due to their natural diversity and ability to inhabit a variety of niches, allowing the selection of cellulolytic strains resistant to environmental stresses. The screening of the cellulolytic activity of 398 bacteria isolated from various ecosystems in Algeria (cave, ruins, chott, thermal station, and rhizosphere of arid and semi-arid regions) was performed by the appearance of a hydrolysis zone on carboxymethylcellulose (CMC) medium. The cellulase activity on CMC (1%) broth allowed to select 26 strains among which 12 had the best activity (0.3 U/mL to 2.2 U/mL). Optimization of physicochemical parameters (salinity: 0–1 M NaCl; pH: 3, 4, 7, 9, and 11; temperature: 30, 45, and 50 °C; PEG8000: 0 and 30%) involved in growth and cellulose production showed that the majority of strains were mesophilic, neutrophilic, or alkali- tolerant and tolerant to 30% of PEG8000. The cellulase activity and stability under different stress allowed to retain five strains, which the most efficient. Based on the 16S-rRNA sequencing results, they belonged to the genus Bacillus. The physicochemical properties of cellulases (crude extract) showed a CMCase active over a wide range of pH (4 to 11), optimal at 50 °C and 60 °C. The inhibiting salinity effect on the activity was not detected and was negligible on the enzymatic stability. The residual CMCase activity remained between 40 and 70% in a temperature range between 40 and 70 °C, was stable over a wide range of saline concentrations (0–2000 mM), and was weakly affected at 30% of PEG8000. The crude enzyme extract was able to hydrolyze both soluble and insoluble cellulosic substrates. The evaluation of the hydrolysis capacity of lignocellulosic waste revealed the ability of tested strains to degrade wheat bran, barley bran, and corncob. In addition, the enzyme showed significant multi-stress resistance on solid and liquid media. By these characteristics, these cellulolytic bacteria could be attractive to be used in various industrial and biotechnology applications.

Rhizosphere bacteria community and functions under typical natural halophyte communities in North China salinized areas

Soil salinity is a serious environmental issue in arid China. Halophytes show extreme salt tolerance and are grow in saline-alkaline environments. There rhizosphere have complex bacterial communities, which mediate a variety of interactions between plants and soil. High-throughput sequencing was used to investigated rhizosphere bacterial community changes under the typical halophyte species in arid China. Three typical halophytes were Leymus chinensis (LC), Puccinellia tenuiflora (PT), Suaeda glauca (SG). The dominant phyla were Proteobacteria, Actinobacteria, Chloroflexi, Gemmatimonadetes, Acidobacteria and Bacteroidetes, Suaeda glauca rhizosphere has stronger enrichment of Nitrospirae and Cyanobacteria. The Ace, Chao and Shannon indices were significantly higher in soils under LC and SG (P<0.05). Functional predictions, based on 16S rRNA gene by PICRUSt, indicated that Energy metabolism, Amino acid metabolism, Carbohydrate metabolism and Fatty acid metabolism are dominant bacterial functions in three halophytes rhizosphere soil. Carbon metabolism, Oxidative phosphorylation, Methane metabolism, Sulfur metabolism and Nitrogen metabolism in SG were significantly higher than that in LC and PT. Regression analysis revealed that rhizosphere soil bacterial community structure is influenced by soil organic matter (SOM) and soil water content (SWC), while soil bacterial community diversity is affected by soil pH. This study contributes to our understanding of the distribution characteristics and metabolic functions under different halophyte rhizosphere bacterial communities, and will provide references for the use of rhizosphere bacteria to regulate the growth of halophytes and ecological restoration of saline soil.

Overview of lignocellulolytic enzyme systems with special reference to valorization of lignocellulosic biomass

Lignocellulosic biomass, one of the most valuable natural resources, is abundantly present on earth. Being a renewable feedstock, it harbors a great potential to be exploited as a raw material, to produce various value-added products. Lignocellulolytic microorganisms hold a unique position regarding the valorization of lignocellulosic biomass as they contain efficient enzyme systems capable of degrading this biomass. The ubiquitous nature of these microorganisms and their survival under extreme conditions have enabled their use as an effective producer of lignocellulolytic enzymes with improved biochemical features crucial to industrial bioconversion processes. These enzymes can prove to be an exquisite tool when it comes to the eco-friendly manufacturing of value-added products using waste material. This review focuses on highlighting the significance of lignocellulosic biomass, microbial sources of lignocellulolytic enzymes and their use in the formation of useful products.

A Review on Bacterial Contribution to Lignocellulose Breakdown into Useful Bio-Products

Discovering novel bacterial strains might be the link to unlocking the value in lignocellulosic bio-refinery as we strive to find alternative and cleaner sources of energy. Bacteria display promise in lignocellulolytic breakdown because of their innate ability to adapt and grow under both optimum and extreme conditions. This versatility of bacterial strains is being harnessed, with qualities like adapting to various temperature, aero tolerance, and nutrient availability driving the use of bacteria in bio-refinery studies. Their flexible nature holds exciting promise in biotechnology, but despite recent pointers to a greener edge in the pretreatment of lignocellulose biomass and lignocellulose-driven bioconversion to value-added products, the cost of adoption and subsequent scaling up industrially still pose challenges to their adoption. However, recent studies have seen the use of co-culture, co-digestion, and bioengineering to overcome identified setbacks to using bacterial strains to breakdown lignocellulose into its major polymers and then to useful products ranging from ethanol, enzymes, biodiesel, bioflocculants, and many others. In this review, research on bacteria involved in lignocellulose breakdown is reviewed and summarized to provide background for further research. Future perspectives are explored as bacteria have a role to play in the adoption of greener energy alternatives using lignocellulosic biomass.

Forest management practices of Pinus tabulaeformis plantations alter soil organic carbon stability by adjusting microbial characteristics on the Loess Plateau of China

Sustainable management practices can enhance the capacity and potential for soil carbon (C) sequestration, significantly contributing towards mitigating regional climate change. Here, we investigated how the microbial characteristics of a Pinus tabulaeformis plantation responded to different management practices to identify the role of microbial characteristics in influencing the stability of soil organic carbon (SOC). We chose a Pinus tabulaeformis plantation on the Loess Plateau where forest management practices had been conducted since 1999. Five forest management practices were implemented: two at the forest level (P. tabulaeformis with and without ground litter), and three using different vegetation restoration approaches after clear-cutting (P. tabulaeformis seedlings, abandoned grassland, and natural shrub regeneration). Microbial biomass, soil respiration, microbial community structure, microbial metabolic function, and soil oxidizable organic carbon (OC) fractions were evaluated. Forest management practices changed SOC stability by adjusting the microbial characteristics (e.g. soil microbial community diversity and microbial metabolic function diversity). The result of path analysis was that the direct path coefficient of microbial biomass on soil oxidizable OC fractions was the largest, which was 1.499. Path analysis and redundancy analysis showed that microbial biomass had the largest direct influence on soil oxidizable OC fractions. Compared with other forest management practices, natural shrub regeneration increased the nonlabile carbon fraction by increasing soil microbial characteristics, and contributed the most towards stabilizing SOC, which enhanced the stability of the soil ecosystem on the plateau. In conclusion, microbial biomass was the biggest influence factor of SOC stability. In contrast, the stability of SOC may be most stable in the area of natural shrub regeneration.

Production of a novel slow-release coal fly ash microbial fertilizer for restoration of mine vegetation

Driven by a need for economic development, a large number of mines have been exploited, resulting in the destruction of large areas of vegetation and a significant deterioration in local ecological environment. In order to restore vegetation of mines in a timely manner, a new type of organic fertilizer needs to be developed. However, until now, there has been a lack of organic fertilizer with slow-release suitable for mine virescence. As the largest amount of solid waste in coal-fired power plants, coal fly ash presents a promising basis as a bioresource for developing this type of organic fertilizer. In our study, for the first time, fly ash was demonstrated to be an effective carrier matrix via hydrothermal-alkali treatment sintering process for solving the problem of low efficiency of fly ash adsorption for microorganisms via sintering process. Then, a novel slow-release microbial fertilizer which can adsorb a variety of microorganisms was produced using ethyl cellulose as a solvent adhesive. Finally, the pot experiment showed that the soil fertility of abandoned mines can be improved after applying the fly ash microbial fertilizer, and demonstrated the regreening effects with Pseudodrynaria coronans and Buxus microphylla. Our study provides a green engineering approach to recycle fly ash for regreening mines, as well as a new development direction for high-value green recyclable pathway of fly ash.

Changes in cell wall components and polysaccharide-degrading enzymes in relation to differences in texture during sweetpotato storage root growth

Sweetpotato has special texture characteristics, which directly affect the eating quality and post-production processing quality of sweetpotato. To investigate the texture change mechanism of sweetpotato during the growth process, this study selected two varieties with significant differences in texture from 35 varieties. The storage roots were sampled at 50, 80, 110, and 140 days after planting. Measure the texture parameters, the cell wall composition content, cell wall-related enzyme activities and the expression of expansin genes of sweetpotato storage roots. The results show that the hardness, adhesiveness and chewiness parameters of 'Yushu No 10' were significantly lower than those of 'Mianfen No 1', they have significantly different texture properties. In terms of cell wall composition, the soluble pectin content of 'Yushu No 10' was more than twice that of 'Mianfen No 1', whereas the insoluble pectin content was lower than that of 'Mianfen No 1', with the cellulose content of 'Yushu No 10' being significantly higher than that of 'Mianfen No 1'. In terms of cell wall-related enzymes, 'Yushu No 10' hardness gumminess and chewiness had a significant correlation with hemicellulose activity, and 'Mianfen No 1' had insignificant correlation with four cell wall-related enzymes. Expansin genes were also expressed differently during the various stages of root tubers expansin. The expressions of IbEXP1, IbEXP2 and IbEXPL1 were significantly correlated with the changes in cell wall component content, and were related to the qualitative structure changes. The research conclusion shows that the texture changes during the growth of sweetpotato are related to cell wall composition, cell wall-related enzyme activity changes, and the expression of expansin genes. This study provides theoretical guidance for in-depth study of texture changes of sweetpotato, post-harvest processing and utilization and quality improvement of storage roots.

Long-term effects of two organic amendments on bacterial communities of calcareous mediterranean soils degraded by mining

The application of organic amendments to improve the chemical and biological properties of degraded soils from calcareous quarries is necessary to accelerate restoration processes. The aim of this study is to assess the success of different restoration treatments in the long-term using two organic amendments (sewage sludge from urban waste water (SS) and compost from domestic solid waste (CW)). The chemical properties and bacterial communities of restored soils were compared with unamended soils (NA) and surrounding natural soils (NS) from a limestone quarry in a semi-arid ecosystem. After 10 years of the addition of organic amendments, the abundance of soil bacteria, diversity, and taxonomic composition at the phylum and genus level in each soil type was analysed by rRNA 16 S amplification (PCR), sequencing using Illumina, and comparison with the SILVA database using QIIME2 software. The relationships between soil bacterial taxa and chemical soil properties (pH, electrical conductivity (EC), total organic carbon (TOC), and total nitrogen content (TN)) were also studied, as well as the interrelations between soil bacterial taxa at the genus level or the next upper taxonomic level identified. The organic amendments changed the chemical properties of the restored soils, influencing the microbial communities of the restored soils. CW treatment was the organic amendment that most resembled NS, favouring in the long-term a greater diversity and proliferation of bacteria. Several bacterial communities, more abundant in NA and CW soils, were strongly correlated with each other (Craurococcus, Phaselicystis, Crossiella, etc.), forming a bacterial co-occurrence pattern (Co-occurrence pattern 1). Those bacteria showed high significant positive correlations with TOC, TN, and EC and negative correlations with the soil pH. In contrast, NA soils presented other groups of bacterial communities (Co-occurrence pattern 2) represented by Sphingomonas, Rubellimicrobium, Noviherbaspirillum, Psychroglaciecola and Caenimonas, which showed high significant positive correlations with soil pH and negative correlations with TOC, TN, and EC. The distance-based redundancy analysis indicated that SS soils remained in an intermediate stage of chemical and biological quality between NS and NA soils. Our results demonstrate that soil chemical properties and soil bacterial communities significantly changed with organic amendments in calcareous Mediterranean soils degraded by mining.