• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4661586)   Today's Articles (70)   Subscriber (51519)
For: Cox K, Bond PJ, Grottesi A, Baaden M, Sansom MSP. Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers. Eur Biophys J 2007;37:131-41. [PMID: 17551722 DOI: 10.1007/s00249-007-0185-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2006] [Revised: 05/07/2007] [Accepted: 05/08/2007] [Indexed: 11/26/2022]
Number Cited by Other Article(s)
1
Molecular Insights into Substrate Binding of the Outer Membrane Enzyme OmpT. Catalysts 2023. [DOI: 10.3390/catal13020214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
2
Khalid S, Schroeder C, Bond PJ, Duncan AL. What have molecular simulations contributed to understanding of Gram-negative bacterial cell envelopes? MICROBIOLOGY (READING, ENGLAND) 2022;168. [PMID: 35294337 PMCID: PMC9558347 DOI: 10.1099/mic.0.001165] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
3
Saunders GM, Bruce Macdonald HE, Essex JW, Khalid S. Prediction of the Closed Conformation and Insights into the Mechanism of the Membrane Enzyme LpxR. Biophys J 2018;115:1445-1456. [PMID: 30287112 PMCID: PMC6260217 DOI: 10.1016/j.bpj.2018.09.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 07/27/2018] [Accepted: 09/06/2018] [Indexed: 01/18/2023]  Open
4
Chipot C, Dehez F, Schnell JR, Zitzmann N, Pebay-Peyroula E, Catoire LJ, Miroux B, Kunji ERS, Veglia G, Cross TA, Schanda P. Perturbations of Native Membrane Protein Structure in Alkyl Phosphocholine Detergents: A Critical Assessment of NMR and Biophysical Studies. Chem Rev 2018;118:3559-3607. [PMID: 29488756 PMCID: PMC5896743 DOI: 10.1021/acs.chemrev.7b00570] [Citation(s) in RCA: 117] [Impact Index Per Article: 16.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Indexed: 12/25/2022]
5
Konshina AG, Krylov NA, Efremov RG. Cardiotoxins: Functional Role of Local Conformational Changes. J Chem Inf Model 2017;57:2799-2810. [DOI: 10.1021/acs.jcim.7b00395] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
6
Ortiz-Suarez ML, Samsudin F, Piggot TJ, Bond PJ, Khalid S. Full-Length OmpA: Structure, Function, and Membrane Interactions Predicted by Molecular Dynamics Simulations. Biophys J 2017;111:1692-1702. [PMID: 27760356 PMCID: PMC5071624 DOI: 10.1016/j.bpj.2016.09.009] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Revised: 08/30/2016] [Accepted: 09/06/2016] [Indexed: 12/02/2022]  Open
7
Parkin J, Chavent M, Khalid S. Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes. Biophys J 2016;109:461-8. [PMID: 26244728 DOI: 10.1016/j.bpj.2015.06.050] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2015] [Revised: 06/09/2015] [Accepted: 06/24/2015] [Indexed: 01/05/2023]  Open
8
Reddy BL, Saier MH. Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins. PLoS One 2016;11:e0152733. [PMID: 27064789 PMCID: PMC4827864 DOI: 10.1371/journal.pone.0152733] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2016] [Accepted: 03/18/2016] [Indexed: 12/11/2022]  Open
9
Iordanov I, Renault M, Réat V, Bosshart PD, Engel A, Saurel O, Milon A. Dynamics of Klebsiella pneumoniae OmpA transmembrane domain: The four extracellular loops display restricted motion behavior in micelles and in lipid bilayers. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2012;1818:2344-53. [DOI: 10.1016/j.bbamem.2012.05.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Revised: 05/02/2012] [Accepted: 05/03/2012] [Indexed: 10/28/2022]
10
Negoda A, Negoda E, Reusch RN. Resolving the native conformation of Escherichia coli OmpA. FEBS J 2010;277:4427-37. [DOI: 10.1111/j.1742-4658.2010.07823.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
11
Luan B, Carr R, Caffrey M, Aksimentiev A. The effect of calcium on the conformation of cobalamin transporter BtuB. Proteins 2010;78:1153-62. [PMID: 19927326 DOI: 10.1002/prot.22635] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
12
Catoire LJ, Zoonens M, van Heijenoort C, Giusti F, Guittet E, Popot JL. Solution NMR mapping of water-accessible residues in the transmembrane beta-barrel of OmpX. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2009;39:623-30. [PMID: 19639312 DOI: 10.1007/s00249-009-0513-2] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2009] [Revised: 06/19/2009] [Accepted: 06/22/2009] [Indexed: 12/11/2022]
13
One membrane protein, two structures and six environments: a comparative molecular dynamics simulation study of the bacterial outer membrane protein PagP. Mol Membr Biol 2009;26:205-14. [PMID: 19280380 DOI: 10.1080/09687680902788967] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
14
Gating at both ends and breathing in the middle: conformational dynamics of TolC. Biophys J 2008;95:5681-91. [PMID: 18835894 DOI: 10.1529/biophysj.108.136028] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
15
Yang LW, Chng CP. Coarse-grained models reveal functional dynamics--I. Elastic network models--theories, comparisons and perspectives. Bioinform Biol Insights 2008;2:25-45. [PMID: 19812764 PMCID: PMC2735964 DOI: 10.4137/bbi.s460] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
16
Molecular dynamics simulations and membrane protein structure quality. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2007;37:403-9. [PMID: 17960373 DOI: 10.1007/s00249-007-0225-4] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2007] [Revised: 09/28/2007] [Accepted: 10/03/2007] [Indexed: 10/22/2022]
PrevPage 1 of 1 1Next
© 2004-2025 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA