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Hachisuka SI, Sakurai T, Mizuno S, Kosuge K, Endo S, Ishii-Hyakutake M, Miyahara Y, Yamazaki M, Tsuge T. Isolation and characterization of polyhydroxyalkanoate-degrading bacteria in seawater at two different depths from Suruga Bay. Appl Environ Microbiol 2023; 89:e0148823. [PMID: 37855636 PMCID: PMC10686062 DOI: 10.1128/aem.01488-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 09/04/2023] [Indexed: 10/20/2023] Open
Abstract
IMPORTANCE Polyhydroxyalkanoate (PHA) is a highly biodegradable microbial polyester, even in marine environments. In this study, we incorporated an enrichment culture-like approach in the process of isolating marine PHA-degrading bacteria. The resulting 91 isolates were suggested to fall into five genera (Alloalcanivorax, Alteromonas, Arenicella, Microbacterium, and Pseudoalteromonas) based on 16S rRNA analysis, including two novel genera (Arenicella and Microbacterium) as marine PHA-degrading bacteria. Microbacterium schleiferi (DSM 20489) and Alteromonas macleodii (NBRC 102226), the type strains closest to the several isolates, have an extracellular poly(3-hydroxybutyrate) [P(3HB)] depolymerase homolog that does not fit a marine-type domain composition. However, A. macleodii exhibited no PHA degradation ability, unlike M. schleiferi. This result demonstrates that the isolated Alteromonas spp. are different species from A. macleodii. P(3HB) depolymerase homologs in the genus Alteromonas should be scrutinized in the future, particularly about which ones work as the depolymerase.
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Affiliation(s)
- Shin-Ichi Hachisuka
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Tetsuo Sakurai
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Shoji Mizuno
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Kazuho Kosuge
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Sayaka Endo
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Manami Ishii-Hyakutake
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Yuki Miyahara
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
| | - Motoyuki Yamazaki
- Shizuoka Prefectural Research Institute of Fishery and Ocean, Iwashigashima, Yaizu, Shizuoka, Japan
| | - Takeharu Tsuge
- Department of Materials Science and Engineering, Tokyo Institute of Technology, Yokohama, Kanagawa, Japan
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2
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González F, Carelli A, Komarcheuski A, Uana M, do Prado RM, Rossoni D, Gomes M, Vasconcellos R. Yeast Cell Wall Compounds on The Formation of Fermentation Products and Fecal Microbiota in Cats: An In Vivo and In Vitro Approach. Animals (Basel) 2023; 13:637. [PMID: 36830424 PMCID: PMC9951743 DOI: 10.3390/ani13040637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 12/28/2022] [Accepted: 12/28/2022] [Indexed: 02/15/2023] Open
Abstract
The effects of yeast cell wall compounds (YCWs) being added to cat food on hindgut fermentation metabolites and fecal microbiota were assessed in in vivo Experiment 1 (Exp. 1) and in vitro Experiments 2 and 3 (Exp. 2 and 3). In Exp. 1, the cats' diets were supplemented with two dietary concentrations (46.2 and 92.4 ppm) of YCWs (YCW-15 and YCW-30, respectively), and a negative control diet with no compound in three groups (six cats per group) was used to assess the fecal score, pH, digestibility, fermentation products, and microbiota. In Exp. 2, feces from the cats that were not supplemented with YCWs (control) were used as an inoculum. A blend of pectin, amino acids, and cellulose was used as a substrate, and the YCW compound was added at two levels (5 and 10 mg). In Exp. 3, feces from cats fed YCWs were used as an inoculum to test three different substrates (pectin, amino acids, and cellulose). In Exp. 2 and 3, the gas production, pH, and fermentation products (ammonia, SCFAs, and BCFAs) were assessed. YCW-30 resulted in a higher digestibility coefficient of the crude protein, organic matter (OM) (p < 0.05), and energy of the diet (p < 0.10). Regarding the fermentation products, YCW-15 showed a trend toward higher concentrations of propionate, acetate, lactate, ammonia, isobutyrate, and valerate, while YCW-30 showed a trend (p < 0.10) toward higher levels of butyrate and pH values. The bacteroidia class and the genus Prevotella were increased by using YCW-30 and the control. At the gender level, decreased (p < 0.01) Megasphaera was observed with YCW inclusion. The microbiota differed (p < 0.01) among the groups in their Shannon indexes. For beta diversity, YCW-30 showed higher indexes (p = 0.008) than the control. The microbiota metabolic profile differed in the pathway CENTFERM-PWY; it was more expressed in YCW-30 compared to the control. In Exp. 2, the YCWs showed a higher ratio (p = 0.006) of the fermentation products in the treatments with additives with a trend towards a high dose of the additive (10 mg). In Exp. 3, the effects of the substrates (p < 0.001), but not of the YCWs, on the fermentation products were observed, perhaps due to the low dietary concentrations we used. However, the marked responses of the fermentation products to the substrates validated the methodology. We could conclude that the YCWs, even at low dietary concentrations, affected fecal SCFA production, reduced the fecal pH, and modulated the fecal microbiota in the cats. These responses were more pronounced under in vitro conditions.
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Affiliation(s)
- Fernando González
- Department of Internal Medicine, College of Veterinary Medicine and Animal Science, University of São Paulo (USP)—São Paulo, Av. Prof. Dr. Orlando Marques de Paiva, 87, São Paulo 13690-970, Brazil
| | - Amanda Carelli
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
| | - Alina Komarcheuski
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
| | - Mayara Uana
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
| | - Rodolpho Martin do Prado
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
| | - Diogo Rossoni
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
| | - Márcia Gomes
- Department of Internal Medicine, College of Veterinary Medicine and Animal Science, University of São Paulo (USP)—São Paulo, Av. Prof. Dr. Orlando Marques de Paiva, 87, São Paulo 13690-970, Brazil
| | - Ricardo Vasconcellos
- Department of Animal Science, State University of Maringá, Maringá, Av. Colombo, 5790, Maringá 87020-900, Brazil
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3
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Anh DH, Dumri K, Yen LTH, Punyodom W. The earth-star basidiomycetous mushroom Astraeus odoratus produces polyhydroxyalkanoates during cultivation on malt extract. Arch Microbiol 2022; 205:34. [PMID: 36542149 DOI: 10.1007/s00203-022-03297-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 05/20/2022] [Accepted: 10/19/2022] [Indexed: 12/24/2022]
Abstract
Polyhydroxyalkanoates (PHAs) including poly-3-hydroxybutyrate (P3HB) as secondary metabolisms were in vitro produced by the edible basidiomycetous mushroom Astraeus odoratus during its growth on malt agar extract. Various carbon and nitrogen sources containing cellulose, glucose, glycerol, rice straw powder, soybean meal and peptone were investigated for the growth of basidiomycetous mushrooms. During cultivation, the A. odoratus culture exudated the considerably extracellular fluid up to approx. 2.3 ml on 2% malt extract agar plate within 7 days. The chemical compounds of the exudated fluid were further investigated by Fourier-transform infrared spectroscopy (FTIR) and gas chromatography/mass spectrometry (GC/MS); and its morphology of the lyophilized sample was observed by scanning electron microscope (SEM). FTIR results showed the characteristic bands of OH at 3445 cm-1, CH/CH2/symmetric CH3 (stretch) at 2923 and 2852 cm-1, C=O at 1730 cm-1, asymmetric CH3 (bend) at 1454 and 1414 cm-1, C-O of COO- at 1396 cm-1 and C-O-C at 1223, 1160, 1116, 1058 and 1019 cm-1 which were similar to the absorptive characteristics of P3HB. Methyl ester derivatives of GC/MS results identified 7 compounds including: 3-hydroxybutanoic (monomer of PHB), aminobenzoic, salicylic, hexadecenoic, octadecadienoic, octadecenoic and octadecanoic acids. SEM images revealed a fibriform and porous materials. Hence, the occurrence of PHAs was first described in a basidiomycetous mushroom A. odoratus. Thus, PHAs could be found not only in bacteria and but also in basidiomycetous mushroom, which can be promising target for bioplastics and green environmental studies.
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Affiliation(s)
- Dau Hung Anh
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai, 50200, Thailand.,Biogreen Material Research & Service Part., Ltd., Chiang Mai, 50140, Thailand
| | - Kanchana Dumri
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai, 50200, Thailand.,Biogreen Material Research & Service Part., Ltd., Chiang Mai, 50140, Thailand.,Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Keaw Road, Suthep, Chiang Mai, 50200, Thailand
| | - Le Thi Hoang Yen
- Laboratory of Fungi Technology, Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi, Vietnam
| | - Winita Punyodom
- Center of Excellence in Materials Science and Technology, Chiang Mai University, Chiang Mai, 50200, Thailand. .,Department of Chemistry, Faculty of Science, Chiang Mai University, 239 Huay Keaw Road, Suthep, Chiang Mai, 50200, Thailand.
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4
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Tan HT, Chek MF, Neoh SZ, Ang SL, Yoshida S, Hakoshima T, Sudesh K. Characterization of the polyhydroxyalkanoate (PHA) synthase from Ideonella sakaiensis, a bacterium that is capable of degrading and assimilating poly(ethylene terephthalate). Polym Degrad Stab 2022. [DOI: 10.1016/j.polymdegradstab.2022.110160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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5
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Szacherska K, Moraczewski K, Rytlewski P, Czaplicki S, Ciesielski S, Oleskowicz-Popiel P, Mozejko-Ciesielska J. Polyhydroxyalkanoates production from short and medium chain carboxylic acids by Paracoccus homiensis. Sci Rep 2022; 12:7263. [PMID: 35508573 PMCID: PMC9068790 DOI: 10.1038/s41598-022-11114-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Accepted: 04/12/2022] [Indexed: 11/09/2022] Open
Abstract
The aim of this study was to evaluate an effect of short and medium chain carboxylic acids (CAs) rich stream derived from acidogenic mixed culture fermentation of acid whey on polyhydroxyalkanoates (PHAs) synthesis by Paracoccus homiensis and compare it with the impact of individual synthetic CAs. The obtained results confirmed that the analyzed bacterium is able to metabolize synthetic CAs as the only carbon sources in the growth medium with maximum PHAs production yields of 26% of cell dry mass (CDM). The replacement of the individual CAs by a CAs-rich residual stream was found to be beneficial for the Paracoccus homiensis growth. The highest biomass concentration reached about 2.5 g/L with PHAs content of 17% of CDM. The purified PHAs were identified as poly(3-hydroxybutyrate-co-3-hydroxyvalerate) by applying gas chromatography coupled with mass spectrometry, Fourier transform infrared spectroscopic spectra and UV-Vis spectra. Furthermore, a differential scanning calorimetric, thermogravimetric and water contact angle analysis proved that the extracted copolymers have useful properties. The obtained data are promising in the perspective of developing a microbial PHAs production as a part of an integrated valorization process of high CAs content waste-derived streams.
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Affiliation(s)
- Karolina Szacherska
- Department of Microbiology and Mycology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719, Olsztyn, Poland
| | - Krzysztof Moraczewski
- Institute of Materials Engineering, Kazimierz Wielki University, 85-064, Bydgoszcz, Poland
| | - Piotr Rytlewski
- Institute of Materials Engineering, Kazimierz Wielki University, 85-064, Bydgoszcz, Poland
| | - Sylwester Czaplicki
- Department of Plant Food Chemistry and Processing, University of Warmia and Mazury in Olsztyn, Pl. Cieszyński 1, 10-726, Olsztyn, Poland
| | - Sławomir Ciesielski
- Department of Environmental Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719, Olsztyn, Poland
| | - Piotr Oleskowicz-Popiel
- Water Supply and Bioeconomy Division, Faculty of Environmental Engineering and Energy, Poznan University of Technology, 60-965, Poznan, Poland
| | - Justyna Mozejko-Ciesielska
- Department of Microbiology and Mycology, Faculty of Biology and Biotechnology, University of Warmia and Mazury in Olsztyn, 10-719, Olsztyn, Poland.
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6
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Polyhydroxyalkanoates (PHAs) Production from Volatile Fatty Acids (VFAs) from Organic Wastes by Pseudomonas oleovorans. FERMENTATION 2021. [DOI: 10.3390/fermentation7040287] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
This study aimed to investigate the production of polyhydroxyalkanoates (PHAs), a biodegradable polymer from organic wastes by Pseudomonas oleovorans. Volatile fatty acids (VFAs) from acidogenic fermentations of chicken manure (VFAs-CM) and potato peels (VFAs-PP), rich in organic matter majorly acetic (49.9%), butyric (15%) and propionic acids (11.1%) were utilized as substrates for microbial processes. During 72 h of cultivations, samples were withdrawn at intervals and analyzed for cell growth parameters, PHAs accumulation and polymeric properties. The highest biopolymer accumulation (0.39 g PHAs/g DCW) was achieved at 48 h of cultivation from medium containing VFAs-PP as the sole source of carbon. On characterization, the produced biopolymers were shown to be semi-crystalline of carbonyl C=O group. Additionally, thermogravimetric analysis (TGA) showed that the produced biopolymers demonstrated the capability to withstand thermal degradation above prescribed temperatures at which cross-linking isomerization reaction occurs, which is a vital property denoting the thermal stability of biopolymer.
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7
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Production of P(3HB-co-4HB) copolymer with high 4HB molar fraction by Burkholderia contaminans Kad1 PHA synthase. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2019.107394] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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8
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Martla M, Umsakul K, Sudesh K. Production and recovery of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) from biodiesel liquid waste (BLW). J Basic Microbiol 2018; 58:977-986. [DOI: 10.1002/jobm.201800279] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Revised: 07/04/2018] [Accepted: 07/12/2018] [Indexed: 11/07/2022]
Affiliation(s)
- Mananya Martla
- Faculty of Science; Department of Microbiology; Prince of Songkla University; Hatyai Songkhla Thailand
| | - Kamontam Umsakul
- Faculty of Science; Department of Microbiology; Prince of Songkla University; Hatyai Songkhla Thailand
| | - Kumar Sudesh
- School of Biological Sciences; Universiti Sains Malaysia; Penang Malaysia
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9
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Mohapatra S, Maity S, Dash HR, Das S, Pattnaik S, Rath CC, Samantaray D. Bacillus and biopolymer: Prospects and challenges. Biochem Biophys Rep 2017; 12:206-213. [PMID: 29090283 PMCID: PMC5651552 DOI: 10.1016/j.bbrep.2017.10.001] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Revised: 10/03/2017] [Accepted: 10/06/2017] [Indexed: 01/27/2023] Open
Abstract
The microbially derived polyhydroxyalkanoates biopolymers could impact the global climate scenario by replacing the conventional non-degradable, petrochemical-based polymer. The biogenesis, characterization and properties of PHAs by Bacillus species using renewable substrates have been elaborated by many for their wide applications. On the other hand Bacillus species are advantageous over other bacteria due to their abundance even in extreme ecological conditions, higher growth rates even on cheap substrates, higher PHAs production ability, and the ease of extracting the PHAs. Bacillus species possess hydrolytic enzymes that can be exploited for economical PHAs production. This review summarizes the recent trends in both non-growth and growth associated PHAs production by Bacillus species which may provide direction leading to future research towards this growing quest for biodegradable plastics, one more critical step ahead towards sustainable development.
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Affiliation(s)
- Swati Mohapatra
- Department of Biotechnology, Indian Institute of Technology, Roorkee 247667, India
| | - Sudipta Maity
- Department of Microbiology, CPGS, OUAT, Bhubaneswar-3, Odisha, India
| | - Hirak Ranjan Dash
- Department of Life Science, National Institute of Technology, Rourkela 769008, Odisha, India
| | - Surajit Das
- Department of Life Science, National Institute of Technology, Rourkela 769008, Odisha, India
| | - Swati Pattnaik
- Department of Microbiology, CPGS, OUAT, Bhubaneswar-3, Odisha, India
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10
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Mohapatra S, Sarkar B, Samantaray DP, Daware A, Maity S, Pattnaik S, Bhattacharjee S. Bioconversion of fish solid waste into PHB using Bacillus subtilis based submerged fermentation process. ENVIRONMENTAL TECHNOLOGY 2017; 38:3201-3208. [PMID: 28162048 DOI: 10.1080/09593330.2017.1291759] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Currently, one of the major problem affecting the world is solid waste management, predominantly petroleum-based plastic and fish solid waste (FSW). However, it is very difficult to reduce the consumption of plastic as well as fish products, but it is promising to convert FSW to biopolymer to reduce eco-pollution. On account of that, the bioconversion of FSW extract to polyhydroxybutyrate (PHB) was undertaken by using Bacillus subtilis (KP172548). Under optimized conditions, 1.62 g/L of PHB has been produced by the bacterium. The purified compound was further characterized by advanced analytical technologies to elucidate its chemical structure. Results indicated that the biopolymer was found to be PHB, the most common homopolymer of polyhydroxyalkanoates (PHAs). This is the first report demonstrating the efficacy of B. subtilis to utilize FSW extract to produce biopolymer. The biocompatibility of the PHB against murine macrophage cell line RAW264.7 demonstrated that, it was comparatively less toxic, favourable for surface attachment and proliferation in comparison with poly-lactic acid (PLA) and commercially available PHB. Thus, further exploration is highly indispensable to use FSW extract as a substrate for production of PHB at pilot scale.
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Affiliation(s)
- S Mohapatra
- a Department of Biotechnology , Indian Institute of Technology , Roorke , India
| | - B Sarkar
- b ICAR-Indian Institute of Agricultural Biotechnology, IINRG Campus , Ranchi , Jharkhand , India
| | - D P Samantaray
- c Department of Microbiology , Orissa University of Agriculture and Technology , Bhubaneswar , Odisha, India
| | - A Daware
- d Department of Molecular Biology and Bioinformatics , Tripura University , Agartala , Tripura , India
| | - S Maity
- c Department of Microbiology , Orissa University of Agriculture and Technology , Bhubaneswar , Odisha, India
| | - S Pattnaik
- c Department of Microbiology , Orissa University of Agriculture and Technology , Bhubaneswar , Odisha, India
| | - S Bhattacharjee
- d Department of Molecular Biology and Bioinformatics , Tripura University , Agartala , Tripura , India
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11
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Lau NS, Sam KK, Amirul AAA. Genome features of moderately halophilic polyhydroxyalkanoate-producing Yangia sp. CCB-MM3. Stand Genomic Sci 2017; 12:12. [PMID: 28138356 PMCID: PMC5259889 DOI: 10.1186/s40793-017-0232-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 01/08/2017] [Indexed: 11/16/2022] Open
Abstract
Yangia sp. CCB-MM3 was one of several halophilic bacteria isolated from soil sediment in the estuarine Matang Mangrove, Malaysia. So far, no member from the genus Yangia, a member of the Rhodobacteraceae family, has been reported sequenced. In the current study, we present the first complete genome sequence of Yangia sp. strain CCB-MM3. The genome includes two chromosomes and five plasmids with a total length of 5,522,061 bp and an average GC content of 65%. Since a different strain of Yangia sp. (ND199) was reported to produce a polyhydroxyalkanoate copolymer, the ability for this production was tested in vitro and confirmed for strain CCB-MM3. Analysis of its genome sequence confirmed presence of a pathway for production of propionyl-CoA and gene cluster for PHA production in the sequenced strain. The genome sequence described will be a useful resource for understanding the physiology and metabolic potential of Yangia as well as for comparative genomic analysis with other Rhodobacteraceae.
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Affiliation(s)
- Nyok-Sean Lau
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas, 11900 Penang Malaysia
| | - Ka-Kei Sam
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas, 11900 Penang Malaysia
| | - Abdullah Al-Ashraf Amirul
- Centre for Chemical Biology, Universiti Sains Malaysia, Bayan Lepas, 11900 Penang Malaysia.,School of Biological Sciences, Universiti Sains Malaysia, Minden, 11800 Penang Malaysia
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12
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Mohapatra S, Samantaray D, Samantaray S, Mishra B, Das S, Majumdar S, Pradhan S, Rath S, Rath C, Akthar J, Achary K. Structural and thermal characterization of PHAs produced by Lysinibacillus sp. through submerged fermentation process. Int J Biol Macromol 2016; 93:1161-1167. [DOI: 10.1016/j.ijbiomac.2016.09.077] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2016] [Revised: 08/28/2016] [Accepted: 09/20/2016] [Indexed: 10/21/2022]
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13
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Chanasit W, Hodgson B, Sudesh K, Umsakul K. Efficient production of polyhydroxyalkanoates (PHAs) from Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) as the sole carbon source. Biosci Biotechnol Biochem 2016; 80:1440-50. [DOI: 10.1080/09168451.2016.1158628] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
Abstract
Conditions for the optimal production of polyhydroxyalkanoate (PHA) by Pseudomonas mendocina PSU using a biodiesel liquid waste (BLW) were determined by response surface methodology. These were an initial carbon to nitrogen ratio (C/N) of 40 (mole/mole), an initial pH of 7.0, and a temperature of 35 °C. A biomass and PHA concentration of 3.65 g/L and about 2.6 g/L (77% DCW), respectively, were achieved in a growth associated process using 20 g/L glycerol in the BLW after 36 h of exponential growth. The PHA monomer compositions were 3HB (3-hydroxybutyrate), a short-chain-length-PHA, and the medium-chain-length-PHA e.g. 3-hydroxyoctanoate and 3-hydroxydecanoate. Both the phbC and phaC genes were characterized. The phbC enzyme had not been previously detected in a Pseudomonas mendocina species. A 2.15 g/L of an exopolysaccharide, alginate, was also produced with a similar composition to that of other Pseudomonas species.
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Affiliation(s)
- Wankuson Chanasit
- Faculty of Science, Department of Microbiology, Prince of Songkla University, Songkhla, Thailand
| | - Brian Hodgson
- Faculty of Pharmaceutical Sciences, Prince of Songkla University, Songkhla, Thailand
| | - Kumar Sudesh
- Ecobiomaterial Research Laboratory, School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia
| | - Kamontam Umsakul
- Faculty of Science, Department of Microbiology, Prince of Songkla University, Songkhla, Thailand
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14
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Bonartsev AP, Zharkova II, Yakovlev SG, Myshkina VL, Mahina TK, Voinova VV, Zernov AL, Zhuikov VA, Akoulina EA, Ivanova EV, Kuznetsova ES, Shaitan KV, Bonartseva GA. Biosynthesis of poly(3-hydroxybutyrate) copolymers by Azotobacter chroococcum 7B: A precursor feeding strategy. Prep Biochem Biotechnol 2016; 47:173-184. [PMID: 27215309 DOI: 10.1080/10826068.2016.1188317] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A precursor feeding strategy for effective biopolymer producer strain Azotobacter chroococcum 7B was used to synthesize various poly(3-hydroxybutyrate) (PHB) copolymers. We performed experiments on biosynthesis of PHB copolymers by A. chroococcum 7B using various precursors: sucrose as the primary carbon source, various carboxylic acids and ethylene glycol (EG) derivatives [diethylene glycol (DEG), triethylene glycol (TEG), poly(ethylene glycol) (PEG) 300, PEG 400, PEG 1000] as additional carbon sources. We analyzed strain growth parameters including biomass and polymer yields as well as molecular weight and monomer composition of produced copolymers. We demonstrated that A. chroococcum 7B was able to synthesize copolymers using carboxylic acids with the length less than linear 6C, including poly(3-hydroxybutyrate-co-3-hydroxy-4-methylvalerate) (PHB-4MHV) using Y-shaped 6C 3-methylvaleric acid as precursor as well as EG-containing copolymers: PHB-DEG, PHB-TEG, PHB-PEG, and PHB-HV-PEG copolymers using short-chain PEGs (with n ≤ 9) as precursors. It was shown that use of the additional carbon sources caused inhibition of cell growth, decrease in polymer yields, fall in polymer molecular weight, decrease in 3-hydroxyvalerate content in produced PHB-HV-PEG copolymer, and change in bacterial cells morphology that were depended on the nature of the precursors (carboxylic acids or EG derivatives) and the timing of its addition to the growth medium.
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Affiliation(s)
- A P Bonartsev
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia.,b Faculty of Biology , Moscow State University , Moscow , Russia.,c Department of Maxillofacial and Oral Surgery , Nizhny Novgorod State Medical Academy , Nizhny Novgorod , Russia
| | - I I Zharkova
- b Faculty of Biology , Moscow State University , Moscow , Russia
| | - S G Yakovlev
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia.,c Department of Maxillofacial and Oral Surgery , Nizhny Novgorod State Medical Academy , Nizhny Novgorod , Russia
| | - V L Myshkina
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia
| | - T K Mahina
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia
| | - V V Voinova
- b Faculty of Biology , Moscow State University , Moscow , Russia.,c Department of Maxillofacial and Oral Surgery , Nizhny Novgorod State Medical Academy , Nizhny Novgorod , Russia
| | - A L Zernov
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia.,c Department of Maxillofacial and Oral Surgery , Nizhny Novgorod State Medical Academy , Nizhny Novgorod , Russia
| | - V A Zhuikov
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia.,c Department of Maxillofacial and Oral Surgery , Nizhny Novgorod State Medical Academy , Nizhny Novgorod , Russia
| | - E A Akoulina
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia
| | - E V Ivanova
- b Faculty of Biology , Moscow State University , Moscow , Russia
| | - E S Kuznetsova
- b Faculty of Biology , Moscow State University , Moscow , Russia
| | - K V Shaitan
- b Faculty of Biology , Moscow State University , Moscow , Russia
| | - G A Bonartseva
- a A.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences , Moscow , Russia
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Isolation and characterization of poly(3-hydroxybutyrate)-producing bacteria from aerobic sludge. Appl Biochem Biotechnol 2014; 175:421-7. [PMID: 25304488 DOI: 10.1007/s12010-014-1271-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2014] [Accepted: 09/23/2014] [Indexed: 10/24/2022]
Abstract
Polyhydroxyalkanoates (PHAs) are biodegradable and environmentally friendly natural polymers. In this study, we isolated a bacterium strain capable of synthesizing PHAs from the aerobic sludge of a sewage treatment plant. The bacterium was identified as Burkholderia cepacia via physiological and biochemical tests as well as 16S rDNA sequence analysis. Strain WN-H41 produced PHAs, which was identified as P3HB. These PHAs have a number average molecular weight of 2.6 × 10(4) Da, a polydispersity index (PDI) of 2.4, and its thermal properties include a glass transition temperature of 1 °C, a melting temperature of 171 °C, and a decomposition temperature of 280 °C. These properties indicate that P3HB produced by WN-H41 has a high purity and good thermal stability.
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Saika A, Watanabe Y, Sudesh K, Tsuge T. Biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxy-4-methylvalerate) by recombinant Escherichia coli expressing leucine metabolism-related enzymes derived from Clostridium difficile. J Biosci Bioeng 2014; 117:670-5. [DOI: 10.1016/j.jbiosc.2013.12.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2013] [Revised: 12/03/2013] [Accepted: 12/04/2013] [Indexed: 12/01/2022]
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Laycock B, Halley P, Pratt S, Werker A, Lant P. The chemomechanical properties of microbial polyhydroxyalkanoates. Prog Polym Sci 2014. [DOI: 10.1016/j.progpolymsci.2013.06.008] [Citation(s) in RCA: 137] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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18
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Laycock B, Halley P, Pratt S, Werker A, Lant P. The chemomechanical properties of microbial polyhydroxyalkanoates. Prog Polym Sci 2013. [DOI: 10.1016/j.progpolymsci.2012.06.003] [Citation(s) in RCA: 197] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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SAIKA A, TSUGE T. Microbial Synthesis of Polyhydroxyalkanoate Copolymer Containing 3-Hydroxy-4-methylvalerate Unit: Recent Development and Perspective. KOBUNSHI RONBUNSHU 2013. [DOI: 10.1295/koron.70.513] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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20
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Wang Y, Zhou Q, Li B, Liu B, Wu G, Ibrahim M, Xie G, Li H, Sun G. Differentiation in MALDI-TOF MS and FTIR spectra between two closely related species Acidovorax oryzae and Acidovorax citrulli. BMC Microbiol 2012; 12:182. [PMID: 22900823 PMCID: PMC3438124 DOI: 10.1186/1471-2180-12-182] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2012] [Accepted: 07/23/2012] [Indexed: 11/30/2022] Open
Abstract
BACKGROUND Two important plant pathogenic bacteria Acidovorax oryzae and Acidovorax citrulli are closely related and often not easy to be differentiated from each other, which often resulted in a false identification between them based on traditional methods such as carbon source utilization profile, fatty acid methyl esters, and ELISA detection tests. MALDI-TOF MS and Fourier transform infrared (FTIR) spectra have recently been successfully applied in bacterial identification and classification, which provide an alternate method for differentiating the two species. RESULTS Characterization and comparison of the 10 A. oryzae strains and 10 A. citrulli strains were performed based on traditional bacteriological methods, MALDI-TOF MS, and FTIR spectroscopy. Our results showed that the identity of the two closely related plant pathogenic bacteria A. oryzae and A. citrulli was able to be confirmed by both pathogenicity tests and species-specific PCR, but the two species were difficult to be differentiated based on Biolog and FAME profile as well as 16 S rRNA sequence analysis. However, there were significant differences in MALDI-TOF MS and FTIR spectra between the two species of Acidovorax. MALDI-TOF MS revealed that 22 and 18 peaks were specific to A. oryzae and A. citrulli, respectively, while FTIR spectra of the two species of Acidovorax have the specific peaks at 1738, 1311, 1128, 1078, 989 cm(-1) and at 1337, 968, 933, 916, 786 cm(-1), respectively. CONCLUSIONS This study indicated that MALDI-TOF MS and FTIR spectra may give a new strategy for rapid bacterial identification and differentiation of the two closely related species of Acidovorax.
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Affiliation(s)
- Yanli Wang
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
| | - Qing Zhou
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Bin Li
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Baoping Liu
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Guoxing Wu
- College of Plant Protection, Yunnan Agricultural University, Kunming, 650201, China
| | - Muhammad Ibrahim
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Guanlin Xie
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Hongye Li
- State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou, 310029, China
| | - Guochang Sun
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Plant Protection and Microbiology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China
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Lau NS, Sudesh K. Revelation of the ability of Burkholderia sp. USM (JCM 15050) PHA synthase to polymerize 4-hydroxybutyrate monomer. AMB Express 2012; 2:41. [PMID: 22877240 PMCID: PMC3434029 DOI: 10.1186/2191-0855-2-41] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2012] [Accepted: 08/01/2012] [Indexed: 11/10/2022] Open
Abstract
The nutrition-versatility of Burkholderia sp. strain USM (JCM 15050) has initiated the studies on the use of this bacterium for polyhydroxyalkanoate (PHA) production. To date, the Burkholderia sp. has been reported to synthesize 3-hydroxybutyrate, 3-hydroxyvalerate and 3-hydroxy-4-methylvalerate monomers. In this study, the PHA biosynthetic genes of this strain were successfully cloned and characterized. The PHA biosynthetic cluster of this strain consisted of a PHA synthase (phaC), β-ketothiolase (phaA), acetoacetyl-CoA reductase (phaB) and PHA synthesis regulator (phaR). The translated products of these genes revealed identities to corresponding proteins of Burkholderia vietnamiensis (99–100 %) and Cupriavidus necator H16 (63–89%). Heterologous expression of phaCBs conferred PHA synthesis to the PHA-negative Cupriavidus necator PHB¯4, confirming that phaCBs encoded functionally active protein. PHA synthase activity measurements revealed that the crude extracts of C. necator PHB¯4 transformant showed higher synthase activity (243 U/g) compared to that of wild-types Burkholderia sp. (151 U/g) and C. necator H16 (180 U/g). Interestingly, the transformant C. necator PHB¯4 harbouring Burkholderia sp. PHA synthase gene accumulated poly(3-hydroxybutyrate-co-4-hydroxybutyrate) with 4-hydroxybutyrate monomer as high as up to 87 mol% from sodium 4-hydroxybutyrate. The wild type Burkholderia sp. did not have the ability to produce this copolymer.
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Saika A, Watanabe Y, Sudesh K, Abe H, Tsuge T. Enhanced incorporation of 3-hydroxy-4-methylvalerate unit into biosynthetic polyhydroxyalkanoate using leucine as a precursor. AMB Express 2011; 1:6. [PMID: 21906338 PMCID: PMC3159905 DOI: 10.1186/2191-0855-1-6] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2011] [Accepted: 05/18/2011] [Indexed: 11/10/2022] Open
Abstract
Ralstonia eutropha PHB-4 expressing Pseudomonas sp. 61-3 polyhydroxyalkanoate (PHA) synthase 1 (PhaC1Ps) synthesizes PHA copolymer containing 3-hydroxybutyrate (3HB) and a small amount (0.5 mol%) of 3-hydroxy-4-methylvalerate (3H4MV) from fructose as a carbon source. In this study, enhanced incorporation of 3H4MV into PHA was investigated using branched amino acid leucine as a precursor of 3H4MV. Leucine has the same carbon backbone as 3H4MV and is expected to be a natural and self-producible precursor. We found that the incorporation of 3H4MV was enhanced by the supplementation of excess amount (10 g/L) of leucine in the culture medium. This finding indicates that 3H4MV can be derived from leucine. To increase metabolic flux to leucine biosynthesis in the host strain by eliminating the feedback inhibition, the cells were subjected to N-methyl-N'-nitro-N-nitrosoguanidine (NTG) mutagenesis and leucine analog resistant mutants were generated. The mutants showed statistically higher 3H4MV fraction than the parent strain without supplementing leucine. Additionally, by supplying excess amount of leucine, the mutants synthesized 3HB-based PHA copolymer containing 3.1 mol% 3H4MV and 1.2 mol% 3-hydroxyvalerate (3HV) as minor constituents, which significantly affected the thermal properties of the copolymer. This study demonstrates that it is possible to enhance the monomer supply of 3H4MV into PHA by manipulating leucine metabolism.
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