Microbial communities in large-scale wood piles and their effects on wood quality and the environment

Multifarious Responses of Forest Soil Microbial Community Toward Climate Change

Forest soils are a pressing subject of worldwide research owing to the several roles of forests such as carbon sinks. Currently, the living soil ecosystem has become dreadful as a consequence of several anthropogenic activities including climate change. Climate change continues to transform the living soil ecosystem as well as the soil microbiome of planet Earth. The majority of studies have aimed to decipher the role of forest soil bacteria and fungi to understand and predict the impact of climate change on soil microbiome community structure and their ecosystem in the environment. In forest soils, microorganisms live in diverse habitats with specific behavior, comprising bulk soil, rhizosphere, litter, and deadwood habitats, where their communities are influenced by biotic interactions and nutrient accessibility. Soil microbiome also drives multiple crucial steps in the nutrient biogeochemical cycles (carbon, nitrogen, phosphorous, and sulfur cycles). Soil microbes help in the nitrogen cycle through nitrogen fixation during the nitrogen cycle and maintain the concentration of nitrogen in the atmosphere. Soil microorganisms in forest soils respond to various effects of climate change, for instance, global warming, elevated level of CO₂, drought, anthropogenic nitrogen deposition, increased precipitation, and flood. As the major burning issue of the globe, researchers are facing the major challenges to study soil microbiome. This review sheds light on the current scenario of knowledge about the effect of climate change on living soil ecosystems in various climate-sensitive soil ecosystems and the consequences for vegetation-soil-climate feedbacks.

Establishment of a Laboratory Scale Set-Up with Controlled Temperature and High Humidity to Investigate Dry Matter Losses of Wood Chips from Poplar during Storage

The aim of this work was to improve the understanding of dry matter losses (DML) that occur in wood chips during the initial phase of storage in outdoor piles. For this purpose, a laboratory scale storage chamber was developed and investigated regarding its ability to recreate the conditions that chips undergo during the initial phase of outdoor storage. Three trials with poplar Max-4 (Populus maximowiczii Henry × Populus nigra L.) chips were performed for 6–10 weeks in the storage chamber under controlled temperature and assisted humidity. Two different set-ups were investigated to maintain a high relative humidity (RH) inside the storage chamber; one using water containers, and one assisted with a humidifier. Moisture content (MC) and DML of the chips were measured at different storage times to evaluate their storage behaviour in the chamber. Additionally, microbiological analyses of the culturable fraction of saproxylic microbiota were performed, with a focus on mesophilic fungi, but discriminating also xerophilic fungi, and mesophilic bacteria, with focus on actinobacteria, in two trials, to gain a view on the poplar wood chip-inhabiting microorganisms as a function of storage conditions (moisture, temperature) and time. Results show that DML up to 8.8–13.7% occurred in the chips within 6–10 storage weeks. The maximum DML were reached in the trial using the humidifier, which seemed a suitable technique to keep a high RH in the testing chamber, and thus, to analyse the wood chips in conditions comparable to those in outdoor piles during the initial storage phase.

Characteristics and Anaerobic Co-Digestion of Press Water from Wood Fuel Preparation and Digested Sewage Sludge

Technical drying of harvested wood fuels is heat and energy consuming, while natural pre-drying in the forest, e.g., in stacks or storage piles, is accompanied by energy losses through natural degradation processes. Dewatering of energy wood by mechanical pressing is an innovative method to reduce the moisture content prior to thermal drying while producing press waters (PW, also referred to as wood juice) as a by-product. To date, the characteristics and utilization potentials of PW are largely unknown. In this study, three different spruce- and poplar-based PW were analyzed for their characteristics such as dry matter (DM), organic dry matter (oDM) concentration, pH-value, element concentration or chemical compounds. Additionally, they were used for anaerobic digestion (AD) experiments with digested sewage sludge (DSS) serving as inoculum. The fresh matter-based DM concentrations of the PW were between 0.4 and 3.2%, while oDM concentrations were between 87 and 89%DM. The spruce-based PW were characterized by lower pH-values of approx. 4.4, while the poplar-based PW was measured at pH 8. In the AD experiments, DSS alone (blank variant) achieved a specific methane yield of 95 ± 26 mL/goDM, while the mixture of spruce-based PW and DSS achieved up to 160 ± 12 mL/goDM, respectively. With further research, PW from wood fuel preparation offer the potential to be a suitable co-substrate or supplement for AD processes.

Bacteria associated with wood tissues of Esca-diseased grapevines: functional diversity and synergy with Fomitiporia mediterranea to degrade wood components

Fungi are considered to cause grapevine trunk diseases such as esca that result in wood degradation. For instance, the basidiomycete Fomitiporia mediterranea (Fmed) is overabundant in white rot, a key type of wood‐necrosis associated with esca. However, many bacteria colonize the grapevine wood too, including the white rot. In this study, we hypothesized that bacteria colonizing grapevine wood interact, possibly synergistically, with Fmed and enhance the fungal ability to degrade wood. We isolated 237 bacterial strains from esca‐affected grapevine wood. Most of them belonged to the families Xanthomonadaceae and Pseudomonadaceae. Some bacterial strains that degrade grapevine‐wood components such as cellulose and hemicellulose did not inhibit Fmed growth in vitro. We proved that the fungal ability to degrade wood can be strongly influenced by bacteria inhabiting the wood. This was shown with a cellulolytic and xylanolytic strain of the Paenibacillus genus, which displays synergistic interaction with Fmed by enhancing the degradation of wood structures. Genome analysis of this Paenibacillus strain revealed several gene clusters such as those involved in the expression of carbohydrate‐active enzymes, xylose utilization and vitamin metabolism. In addition, certain other genetic characteristics of the strain allow it to thrive as an endophyte in grapevine and influence the wood degradation by Fmed. This suggests that there might exist a synergistic interaction between the fungus Fmed and the bacterial strain mentioned above, enhancing grapevine wood degradation. Further step would be to point out its occurrence in mature grapevines to promote esca disease development.

Microbiota Associated with Different Developmental Stages of the Dry Rot Fungus Serpula lacrymans

The dry rot fungus Serpula lacrymans causes significant structural damage by decaying construction timber, resulting in costly restoration procedures. Dry rot fungi decompose cellulose and hemicellulose and are often accompanied by a succession of bacteria and other fungi. Bacterial-fungal interactions (BFI) have a considerable impact on all the partners, ranging from antagonistic to beneficial relationships. Using a cultivation-based approach, we show that S. lacrymans has many co-existing, mainly Gram-positive, bacteria and demonstrate differences in the communities associated with distinct fungal parts. Bacteria isolated from the fruiting bodies and mycelia were dominated by Firmicutes, while bacteria isolated from rhizomorphs were dominated by Proteobacteria. Actinobacteria and Bacteroidetes were less abundant. Fluorescence in situ hybridization (FISH) analysis revealed that bacteria were not present biofilm-like, but occurred as independent cells scattered across and within tissues, sometimes also attached to fungal spores. In co-culture, some bacterial isolates caused growth inhibition of S. lacrymans, and vice versa, and some induced fungal pigment production. It was found that 25% of the isolates could degrade pectin, 43% xylan, 17% carboxymethylcellulose, and 66% were able to depolymerize starch. Our results provide first insights for a better understanding of the holobiont S. lacrymans and give hints that bacteria influence the behavior of S. lacrymans in culture.

The Influence of Freezing Temperature Storage on the Mechanical Durability of Commercial Pellets from Biomass

The interest in pellets utilization for households heating has been growing significantly in the last several years. However, the pellets need to meet certain quality requirements, including the mechanical durability (DU) index. In the winter seasons, the pellets are very often stored in unheated in-door systems or are transported by trucks over long distances. As a result, the pellets are exposed to external weather factors, including very low temperatures (even freezing ones), which can have a negative impact on the quality parameters of the fuel. There are several parameters affecting mechanical durability, but little is known about the influence of a very low temperature on the pellet properties. The aim of this research was to analyze the influence of freezing temperature storage on the mechanical durability of commercial pellets made of different biomass. The research was carried out in accordance with the international standard for solid biofuels PN-EN ISO 17831-1:2016-02. The samples were investigated under three different conditions: after normal storage conditions (20 °C), after frozen storage conditions (−28 °C) and after the defrosting of the pellets. The results revealed that the freezing process and subsequent defrosting of the pellets only causes a small drop in their mechanical durability in comparison to the normal storage conditions. The highest mechanical durability was established for digestate pellet and pine sawdust pellet, at 99.0 ± 0.1% and 98.7 ± 0.1% respectively (p < 0.05). The greatest change of mechanical durability was observed after the defrosting process of pellets, which in the initial stage and at the normal storage temperature were characterized by low mechanical durability. The pellets made of sunflower husk (DU = 87.4%) and coal/straw blend (DU = 96.2%) were distinguished by the highest change in their mechanical durability (ΔDU = 1.7%, p < 0.05). Based on the obtained results, it was concluded that the storage of pellets at freezing temperature does not significantly affect their mechanical durability. However, if the mechanical durability decreases, this result is related to pellets with low initial mechanical durability.

Overhead Protection Increases Fuel Quality and Natural Drying of Leaf-On Woody Biomass Storage Piles

Short-rotation woody crops (SRWC) have the potential to make substantial contributions to the supply of biomass feedstock for the production of biofuels and bioproducts. This study evaluated changes in the fuel quality (moisture, ash, and heating value) of stored spring harvested shrub willow (Salix spp.) and hybrid poplar (Populus spp.) chips with respect to pile protection treatments, location within the storage piles, and length of storage. Leaf-on willow and poplar were harvested in the spring, and wood chips and foliage with moisture content in the range of 42.1% to 49.9% (w.b.) were stored in piles for five months, from May to October 2016. Three protection treatments were randomly assigned to the piles. The control treatment had no cover (NC), so piles were exposed to direct solar radiation and rainfall. The second treatment had a canopy (C) installed above the piles to limit direct rainfall. The final treatment had a canopy plus a dome aeration system (CD) installed over the piles. Covering piles reduced and maintained the low moisture content in wood chip piles. Within 30 days of establishment, the moisture content in the core of the C pile decreased to less than 30%, and was maintained between 24%–26% until the end of the storage period. Conversely, the moisture content in the NC piles decreased in the first two months, but then increased to the original moisture content in the core (>45 cm deep) and up to 70% of the original moisture content in the shell (<45 cm deep). For all the treatments in the tested conditions, the core material dried faster than the shell material. The higher heating value (HHV) across all the treatments increased slightly from 18.31 ± 0.06 MJ/kg at harvest to 18.76 ± 0.21 MJ/kg at the end of the storage period. The lower heating value (LHV) increased by about 50% in the C and CD piles by the end of the storage period. However, in the NC piles, the LHV decreased by 3% in the core and 52% in the shell. Leaf-on SRWC biomass stored in piles created in late spring under climatic conditions in central and northern New York showed differing moisture contents when stored for over 60–90 days. Overhead protection could be used to preserve or improve the fuel quality in terms of the moisture content and heating value if more than two months of storage are required. However, the implementation of such management practice will depend on whether the end users are willing to pay a higher price for dryer biomass and biomass with a higher LHV.

Natural decay process affects the abundance and community structure of Bacteria and Archaea in Picea abies logs

Prokaryotes colonize decaying wood and contribute to the degradation process, but the dynamics of prokaryotic communities during wood decay is still poorly understood. We studied the abundance and community composition of Bacteria and Archaea inhabiting naturally decaying Picea abies logs and tested the hypothesis that the variations in archaeal and bacterial abundances and community composition are coupled with environmental parameters related to the decay process. The data set comprises >500 logs at different decay stages from five geographical locations in south and central Finland. The results show that Bacteria and Archaea are an integral and dynamic component of decaying wood biota. The abundances of bacterial and archaeal 16S rRNA genes increase as wood decay progresses. Changes in bacterial community composition are clearly linked to the loss of density of wood, while specific fungal-bacterial interactions may also affect the distribution of bacterial taxa in decaying wood. Thaumarchaeota were prominent members of the archaeal populations colonizing decaying wood, providing further evidence of the versatility and cosmopolitan nature of this phylum in the environment. The composition and dynamics of the prokaryotic community suggest that they are an active component of biota that are involved in processing substrates in decaying wood material.

Dry Matter Losses and Methane Emissions During Wood Chip Storage: the Impact on Full Life Cycle Greenhouse Gas Savings of Short Rotation Coppice Willow for Heat

A life cycle assessment (LCA) approach was used to examine the greenhouse gas (GHG) emissions and energy balance of short rotation coppice (SRC) willow for heat production. The modelled supply chain includes cutting multiplication, site establishment, maintenance, harvesting, storage, transport and combustion. The relative impacts of dry matter losses and methane emissions from chip storage were examined from a LCA perspective, comparing the GHG emissions from the SRC supply chain with those of natural gas for heat generation. The results show that SRC generally provides very high GHG emission savings of over 90 %. The LCA model estimates that a 1, 10 and 20 % loss of dry matter during storage causes a 1, 6 and 11 % increase in GHG emissions per MWh. The GHG emission results are extremely sensitive to emissions of methane from the wood chip stack: If 1 % of the carbon within the stack undergoes anaerobic decomposition to methane, then the GHG emissions per MWh are tripled. There are some uncertainties in the LCA results, regarding the true formation of methane in wood chip stacks, non-CO₂ emissions from combustion, N₂O emissions from leaf fall and the extent of carbon sequestered under the crop, and these all contribute a large proportion of the life cycle GHG emissions from cultivation of the crop.

Dry Matter Losses and Greenhouse Gas Emissions From Outside Storage of Short Rotation Coppice Willow Chip

This study examined the dry matter losses and the greenhouse gas (GHG) concentrations within two short rotation coppice (SRC) willow wood chip storage heaps. One heap was built on a grassland area (East Midlands) and the other (Rothamsted) on a concrete hard standing. A series of 1- and 3-m probes were embedded in the heaps in order to retrieve gas samples for analysis, and pre-weighed net bags were positioned in the core of the heap to detect dry matter losses. The bagged samples showed dry matter losses of 18 and 19 % in the East Midlands and Rothamsted heaps after 210 and 97 days storage, respectively. The Rothamsted heap showed a whole-heap dry matter loss of 21 %. During this time, the wood chips dried from 54 to 39 % moisture content in the East Midlands heap and 50 to 43 % at Rothamsted. The results from analysing the whole Rothamsted heap indicated an overall loss of 1.5 GJ per tonne stored, although measurements from bagged samples in the core suggested that the chips dried sufficiently to have a minimal energy loss from storage. The process of mixing the heap, however, led to incorporation of wet outer layers and hence the average moisture content was higher in an average sample of chip. After establishment of the heaps, the temperature rose rapidly and this correlated with a peak in carbon dioxide (CO2) concentration within the heap. A peak in methane (CH4) concentration was also detected in both heaps, though more noticeably in the East Midlands heap after around 55 days. In both instances, the peak CH4 concentration occurred as CO2 concentrations dropped, suggesting that after an active period of aerobic decomposition in the first 2 months of storage, the conditions in the heap became anaerobic. The results from this study suggest that outside wood chip storage is not an efficient method of storing biomass, though this may be location-specific as there are some studies showing lower dry matter losses. It is necessary to explore other methods of harvesting SRC to minimise losses and optimise land use efficiency. Further research is required to detect whether there are fugitive emissions of CH4 from wood chip heaps, as this will compromise the net GHG savings from utilising the biomass stored in this way.