1
|
Lu H, Yu S, Qin F, Ning W, Ma X, Tian K, Li Z, Zhou K. A secretion-based dual fluorescence assay for high-throughput screening of alcohol dehydrogenases. Biotechnol Bioeng 2021; 118:1624-1635. [PMID: 33492694 DOI: 10.1002/bit.27677] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 12/10/2020] [Accepted: 12/31/2020] [Indexed: 11/05/2022]
Abstract
Alcohol dehydrogenases (ADHs) play key roles in the production of various chemical precursors that are essential in pharmaceutical and fine chemical industries. To achieve a practical application of ADHs in industrial processes, tailoring enzyme properties through rational design or directed evolution is often required. Here, we developed a secretion-based dual fluorescence assay (SDFA) for high-throughput screening of ADHs. In SDFA, an ADH of interest is fused to a mutated superfolder green fluorescent protein (MsfGFP), which could result in the secretion of the fusion protein to culture broth. After a simple centrifugation step to remove the cells, the supernatant can be directly used to measure the activity of ADH based on a red fluorescence signal, whose increase is coupled to the formation of NADH (a redox cofactor of ADHs) in the reaction. SDFA allows easy quantification of ADH concentration based on the green fluorescence signal of MsfGFP. This feature is useful in determining specific activity and may improve screening accuracy. Out of five ADHs we have tested with SDFA, four ADHs can be secreted and characterized. We successfully screened a combinatorial library of an ADH from Pichia finlandica and identified a variant with a 197-fold higher kcat /km value toward (S)-2-octanol compared to its wild type.
Collapse
Affiliation(s)
- Hongyuan Lu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Shiqin Yu
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Fengyu Qin
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Wenbo Ning
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | - Xiaoqiang Ma
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore.,Disruptive and Sustainable Technologies for Agricultural Precision, Singapore-MIT Alliance for Research and Technology, Singapore, Singapore
| | - Kaiyuan Tian
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| | | | - Kang Zhou
- Department of Chemical and Biomolecular Engineering, National University of Singapore, Singapore
| |
Collapse
|
2
|
Asymmetric Bioreduction of 4-hydroxy-2-butanone by Carbonyl Reductases PFODH and CpSADH Delivers 1,3-butanediol Enantiomers with Excellent R- and S-enantioselectivity. BIOTECHNOL BIOPROC E 2019. [DOI: 10.1007/s12257-019-0111-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
3
|
Liu Y, Merten C, Deska J. Enantioconvergent Biocatalytic Redox Isomerization. Angew Chem Int Ed Engl 2018; 57:12151-12156. [PMID: 29984878 PMCID: PMC6468324 DOI: 10.1002/anie.201804911] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Revised: 06/12/2018] [Indexed: 11/13/2022]
Abstract
Alcohol dehydrogenases can act as powerful catalysts in the preparation of optically pure γ-hydroxy-δ-lactones by means of an enantioconvergent dynamic redox isomerization of readily available Achmatowicz-type pyranones. Imitating the traditionally metal-mediated "borrowing hydrogen" approach to shuffle hydrides across molecular architectures and interconvert functional groups, this chemoinspired and purely biocatalytic interpretation effectively expands the enzymatic toolbox and provides new opportunities in the assembly of multienzyme cascades and tailor-made cellular factories.
Collapse
Affiliation(s)
- Yu‐Chang Liu
- Department of Chemistry & Materials ScienceAalto UniversityKemistintie 102150EspooFinland
| | - Christian Merten
- Organic Chemistry IIRuhr-UniversitätUniversitätsstrasse 15044780BochumGermany
| | - Jan Deska
- Department of Chemistry & Materials ScienceAalto UniversityKemistintie 102150EspooFinland
| |
Collapse
|
4
|
Liu YC, Merten C, Deska J. Enantiokonvergente biokatalytische Redoxisomerisierung. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804911] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Yu-Chang Liu
- Department of Chemistry & Materials Science; Aalto-yliopisto; Kemistintie 1 02150 Espoo Finnland
| | - Christian Merten
- Organic Chemistry II, Ruhr-Universität; Universitätsstraße 150 44780 Bochum Deutschland
| | - Jan Deska
- Department of Chemistry & Materials Science; Aalto-yliopisto; Kemistintie 1 02150 Espoo Finnland
| |
Collapse
|
5
|
Liu YC, Guo C, Liu Y, Wang HB, Wu ZL. Enzymatic cascades for the stereo-complementary epimerisation of in situ generated epoxy alcohols. Org Biomol Chem 2018; 15:2562-2568. [PMID: 28266679 DOI: 10.1039/c7ob00015d] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of optically pure secondary epoxy alcohols from racemic allylic alcohols using a single whole-cell biocatalyst of recombinant Escherichia coli coexpressing three oxidoreductases is described. The cascade involves the concurrent action of a styrene monooxygenase that catalyzes the formation of the chiral epoxy group, and two alcohol dehydrogenases that fulfil the epimerisation of the hydroxy group. Two sets of alcohol dehydrogenases were each applied to couple with styrene monooxygenase in order to realize the epimerisation in a stereo-complementary manner. Excellent enantio- and diastereo-selectivities were achieved for most of the 12 substrates.
Collapse
Affiliation(s)
- Yu-Chang Liu
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. and Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China and Graduate University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Chao Guo
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. and Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China and Graduate University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Yan Liu
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. and Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Hai-Bo Wang
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. and Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| | - Zhong-Liu Wu
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China. and Environmental Microbiology Key Laboratory of Sichuan Province, Chengdu 610041, China
| |
Collapse
|
6
|
Li A, Ye L, Yang X, Wang B, Yang C, Gu J, Yu H. Reconstruction of the Catalytic Pocket and Enzyme-Substrate Interactions To Enhance the Catalytic Efficiency of a Short-Chain Dehydrogenase/Reductase. ChemCatChem 2016. [DOI: 10.1002/cctc.201600921] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Aipeng Li
- Institute of Bioengineering, College of Chemical and Biological Engineering; Zhejiang University; 310027 Hangzhou P.R. China
| | - Lidan Ye
- Institute of Bioengineering, College of Chemical and Biological Engineering; Zhejiang University; 310027 Hangzhou P.R. China
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education; Zhejiang University; 310027 Hangzhou P.R. China
| | - Xiaohong Yang
- Institute of Bioengineering, College of Chemical and Biological Engineering; Zhejiang University; 310027 Hangzhou P.R. China
| | - Bei Wang
- College of Pharmaceutical Science; Zhejiang University of Technology; 310014 Hangzhou P.R. China
| | - Chengcheng Yang
- Institute of Bioengineering, College of Chemical and Biological Engineering; Zhejiang University; 310027 Hangzhou P.R. China
| | - Jiali Gu
- College of Life Science, Department of Materials Chemistry; Huzhou University; 313000 Huzhou P.R. China
| | - Hongwei Yu
- Institute of Bioengineering, College of Chemical and Biological Engineering; Zhejiang University; 310027 Hangzhou P.R. China
| |
Collapse
|
7
|
Xu P, Du PX, Zong MH, Li N, Lou WY. Combination of deep eutectic solvent and ionic liquid to improve biocatalytic reduction of 2-octanone with Acetobacter pasteurianus GIM1.158 cell. Sci Rep 2016; 6:26158. [PMID: 27185089 PMCID: PMC4868980 DOI: 10.1038/srep26158] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2016] [Accepted: 04/27/2016] [Indexed: 01/23/2023] Open
Abstract
The efficient anti-Prelog asymmetric reduction of 2-octanone with Acetobacter pasteurianus GIM1.158 cells was successfully performed in a biphasic system consisting of deep eutectic solvent (DES) and water-immiscible ionic liquid (IL). Various DESs exerted different effects on the synthesis of (R)-2-octanol. Choline chloride/ethylene glycol (ChCl/EG) exhibited good biocompatibility and could moderately increase the cell membrane permeability thus leading to the better results. Adding ChCl/EG increased the optimal substrate concentration from 40 mM to 60 mM and the product e.e. kept above 99.9%. To further improve the reaction efficiency, water-immiscible ILs were introduced to the reaction system and an enhanced substrate concentration (1.5 M) was observed with C4MIM·PF6. Additionally, the cells manifested good operational stability in the reaction system. Thus, the efficient biocatalytic process with ChCl/EG and C4MIM·PF6 was promising for efficient synthesis of (R)-2-octanol.
Collapse
Affiliation(s)
- Pei Xu
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou 510640, China.,Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Peng-Xuan Du
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Min-Hua Zong
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou 510640, China
| | - Ning Li
- Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| | - Wen-Yong Lou
- State Key Laboratory of Pulp and Paper Engineering, South China University of Technology, Guangzhou 510640, China.,Laboratory of Applied Biocatalysis, School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
| |
Collapse
|
8
|
Li A, Ye L, Wu H, Yang X, Yu H. Characterization of an excellent anti-Prelog short-chain dehydrogenase/reductase EbSDR8 from Empedobacter brevis ZJUY-1401. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2015.09.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
9
|
Li A, Ye L, Guo F, Yang X, Yu H. Biocatalytic anti-Prelog reduction of prochiral ketones with whole cells of a newly isolated strain Empedobacter brevis ZJUY-1401. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2015.04.004] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
10
|
Yang Y, Liu J, Li Z. Engineering of P450pyr Hydroxylase for the Highly Regio- and Enantioselective Subterminal Hydroxylation of Alkanes. Angew Chem Int Ed Engl 2014; 53:3120-4. [DOI: 10.1002/anie.201311091] [Citation(s) in RCA: 62] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2013] [Indexed: 11/09/2022]
|
11
|
Yang Y, Liu J, Li Z. Engineering of P450pyr Hydroxylase for the Highly Regio- and Enantioselective Subterminal Hydroxylation of Alkanes. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201311091] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|