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Habe H, Sato Y, Kirimura K. Microbial and enzymatic conversion of levulinic acid, an alternative building block to fermentable sugars from cellulosic biomass. Appl Microbiol Biotechnol 2020; 104:7767-7775. [PMID: 32770274 DOI: 10.1007/s00253-020-10813-7] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 07/25/2020] [Accepted: 08/02/2020] [Indexed: 12/16/2022]
Abstract
Levulinic acid (LA) is an important chemical building block listed among the top 12 value-added chemicals by the United States Department of Energy, and can be obtained through the hydrolysis of lignocellulosic biomass. Using the same approach as in the catalytic production of LA from biomass, catalytic methods to upgrade LA to higher value chemicals have been investigated. Since the discovery of the catabolic genes and enzymes in the LA metabolic pathway, bioconversion of LA into useful chemicals has attracted attention, and can potentially broaden the range of biochemical products derived from cellulosic biomass. With a brief introduction to the LA catabolic pathway in Pseudomonas spp., this review summarizes the current studies on the microbial conversion of LA into bioproducts, including the recent developments to achieve higher yields through genetic engineering of Escherichia coli cells. Three different types of reactions during the enzymatic conversion of LA are also discussed. KEY POINTS: • Levulinic acid is an alternative building block to sugars from cellulosic biomass. • Introduction of levulinic acid bioconversion with natural and engineered microbes. • Initial enzymatic conversion of levulinic acid proceeds via three different pathways. • 4-Hydroxyvalerate is one of the target chemicals for levulinic acid bioconversion.
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Affiliation(s)
- Hiroshi Habe
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan.
| | - Yuya Sato
- Environmental Management Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 16-1 Onogawa, Tsukuba, Ibaraki, 305-8569, Japan
| | - Kohtaro Kirimura
- Department of Applied Chemistry, Faculty of Science and Engineering, Waseda University, Tokyo, 169-8555, Japan
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Abstract
In this review key processes for the synthesis of greener or more sustainable solvents derived from renewable sources (saccharides, lignocellulose and triglycerides) are discussed. It is shown that a series of platform chemicals such as glycerol, levulinic acid and furans can be converted into a variety of solvents through catalytic
transformations that include hydrolysis, esterification, reduction and etherification reactions. It was also considered several aspects of each class of solvent regarding performance within the context of the reactions or extractions for which it is employed.
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Meimoun J, Bernhard Y, Pelinski L, Bousquet T, Pellegrini S, Raquez JM, De Winter J, Gerbaux P, Cazaux F, Tahon JF, Gaucher V, Chenal T, Favrelle-Huret A, Zinck P. Lipase-catalysed polycondensation of levulinic acid derived diol-diamide monomers: access to new poly(ester- co-amide)s. Polym Chem 2020. [DOI: 10.1039/d0py01301c] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Abstract
A new family of biobased poly(ester-co-amide)s is reported from the enzymatic polycondensation of a library of levulinic acid derived diol-diamide monomers with diesters.
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Shende V, Raut AB, Raghav P, Kelkar AA, Bhanage BM. Room-Temperature Asymmetric Transfer Hydrogenation of Biomass-Derived Levulinic Acid to Optically Pure γ-Valerolactone Using a Ruthenium Catalyst. ACS OMEGA 2019; 4:19491-19498. [PMID: 31763574 PMCID: PMC6868911 DOI: 10.1021/acsomega.9b03424] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 10/22/2019] [Indexed: 06/10/2023]
Abstract
This study presents a first report on ruthenium-catalyzed asymmetric transfer hydrogenation (ATH) of levulinic acid (LA) to chiral γ-valerolactone (GVL). ATH of LA has been explored with Noyori's chiral catalyst (Ru-TsDPEN) in methanol solvent. Efficacy of ATH reaction of LA was investigated under different reactions conditions such as temperature, catalyst, and hydrogen donor concentration. The effect of various organic tertiary bases along with formic acid (FA) as a hydrogen donor was studied, and N-methylpiperidine with FA (1:1 molar ratio) was revealed as an efficient hydrogen donor for ATH of LA to GVL furnishing chiral GVL with complete conversion and 93% enantiomeric excess (ee). This operationally simple and mild ATH protocol was tested for practical applicability of ATH of LA obtained from biomass waste (rice husk and wheat straw) and furnished chiral GVL with 82% ee.
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Affiliation(s)
- Vaishali
S. Shende
- Department
of Chemistry, Institute of Chemical Technology, Mumbai 400019, India
| | - Amol B. Raut
- Department
of Chemistry, Institute of Chemical Technology, Mumbai 400019, India
| | - Prathamesh Raghav
- Department
of Chemistry, Institute of Chemical Technology, Mumbai 400019, India
| | - Ashutosh A. Kelkar
- Chemical
Engineering and Process Development Division, CSIR-National Chemical Laboratory, Pune 411008, India
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6
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Characterization of the substrate scope of an alcohol dehydrogenase commonly used as methanol dehydrogenase. Bioorg Med Chem Lett 2019; 29:1446-1449. [DOI: 10.1016/j.bmcl.2019.04.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Revised: 04/01/2019] [Accepted: 04/15/2019] [Indexed: 11/22/2022]
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Manning J, Tavanti M, Porter JL, Kress N, De Visser SP, Turner NJ, Flitsch SL. Regio‐ and Enantio‐selective Chemo‐enzymatic C−H‐Lactonization of Decanoic Acid to (S)‐δ‐Decalactone. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201901242] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Jack Manning
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Michele Tavanti
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Joanne L. Porter
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Nico Kress
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Sam P. De Visser
- School of Chemical Engineering and Analytical ScienceThe University of Manchester Oxford Road Manchester M13 9PL UK
| | - Nicholas J. Turner
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
| | - Sabine L. Flitsch
- Manchester Institute of Biotechnology (MIB)School of ChemistryThe University of Manchester 131 Princess Street M1 7DN Manchester UK
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Manning J, Tavanti M, Porter JL, Kress N, De Visser SP, Turner NJ, Flitsch SL. Regio- and Enantio-selective Chemo-enzymatic C-H-Lactonization of Decanoic Acid to (S)-δ-Decalactone. Angew Chem Int Ed Engl 2019; 58:5668-5671. [PMID: 30861252 DOI: 10.1002/anie.201901242] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Indexed: 12/18/2022]
Abstract
The conversion of saturated fatty acids to high value chiral hydroxy-acids and lactones poses a number of synthetic challenges: the activation of unreactive C-H bonds and the need for regio- and stereoselectivity. Here the first example of a wild-type cytochrome P450 monooxygenase (CYP116B46 from Tepidiphilus thermophilus) capable of enantio- and regioselective C5 hydroxylation of decanoic acid 1 to (S)-5-hydroxydecanoic acid 2 is reported. Subsequent lactonization yields (S)-δ-decalactone 3, a high value fragrance compound, with greater than 90 % ee. Docking studies provide a rationale for the high regio- and enantioselectivity of the reaction.
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Affiliation(s)
- Jack Manning
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
| | - Michele Tavanti
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
| | - Joanne L Porter
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
| | - Nico Kress
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
| | - Sam P De Visser
- School of Chemical Engineering and Analytical Science, The University of Manchester, Oxford Road, Manchester, M13 9PL, UK
| | - Nicholas J Turner
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
| | - Sabine L Flitsch
- Manchester Institute of Biotechnology (MIB), School of Chemistry, The University of Manchester, 131 Princess Street, M1 7DN, Manchester, UK
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Hollmann F, Kara S, Opperman DJ, Wang Y. Biocatalytic synthesis of lactones and lactams. Chem Asian J 2018; 13:3601-3610. [PMID: 30256534 PMCID: PMC6348383 DOI: 10.1002/asia.201801180] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 09/26/2018] [Indexed: 01/15/2023]
Abstract
Cyclic esters and amides (lactones and lactams) are important active ingredients and polymer building blocks. In recent years, numerous biocatalytic methods for their preparation have been developed including enzymatic and chemoenzymatic Baeyer-Villiger oxidations, oxidative lactonisation of diols, and reductive lactonisation and lactamisation of ketoesters. The current state of the art of these methods is reviewed.
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Affiliation(s)
- Frank Hollmann
- Department of Biotechnology, Delft University of Technology, The Netherlands
| | - Selin Kara
- Department of Engineering, Biological and Chemical Engineering, Aarhus University, Denmark
| | | | - Yonghua Wang
- School of Food Science and Engineering, South China University of Technology, Guangzhou, China
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Rodríguez-Álvarez MJ, Ríos-Lombardía N, Schumacher S, Pérez-Iglesias D, Morís F, Cadierno V, García-Álvarez J, González-Sabín J. Combination of Metal-Catalyzed Cycloisomerizations and Biocatalysis in Aqueous Media: Asymmetric Construction of Chiral Alcohols, Lactones, and γ-Hydroxy-Carbonyl Compounds. ACS Catal 2017. [DOI: 10.1021/acscatal.7b02183] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- María J. Rodríguez-Álvarez
- Laboratorio
de Compuestos Organometálicos y Catálisis (Unidad Asociada
al CSIC). Departamento de Química Orgánica e Inorgánica
(IUQOEM), Centro de Innovación en Química Avanzada (ORFEO−CINQA),
Facultad de Química, Universidad de Oviedo, E-33071 Oviedo, Spain
| | | | - Sören Schumacher
- Laboratorio
de Compuestos Organometálicos y Catálisis (Unidad Asociada
al CSIC). Departamento de Química Orgánica e Inorgánica
(IUQOEM), Centro de Innovación en Química Avanzada (ORFEO−CINQA),
Facultad de Química, Universidad de Oviedo, E-33071 Oviedo, Spain
| | - David Pérez-Iglesias
- Laboratorio
de Compuestos Organometálicos y Catálisis (Unidad Asociada
al CSIC). Departamento de Química Orgánica e Inorgánica
(IUQOEM), Centro de Innovación en Química Avanzada (ORFEO−CINQA),
Facultad de Química, Universidad de Oviedo, E-33071 Oviedo, Spain
| | - Francisco Morís
- EntreChem SL, Edificio Científico Tecnológico, Campus El Cristo, 33006 Oviedo, Spain
| | - Victorio Cadierno
- Laboratorio
de Compuestos Organometálicos y Catálisis (Unidad Asociada
al CSIC). Departamento de Química Orgánica e Inorgánica
(IUQOEM), Centro de Innovación en Química Avanzada (ORFEO−CINQA),
Facultad de Química, Universidad de Oviedo, E-33071 Oviedo, Spain
| | - Joaquín García-Álvarez
- Laboratorio
de Compuestos Organometálicos y Catálisis (Unidad Asociada
al CSIC). Departamento de Química Orgánica e Inorgánica
(IUQOEM), Centro de Innovación en Química Avanzada (ORFEO−CINQA),
Facultad de Química, Universidad de Oviedo, E-33071 Oviedo, Spain
| | - Javier González-Sabín
- EntreChem SL, Edificio Científico Tecnológico, Campus El Cristo, 33006 Oviedo, Spain
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Candida parapsilosis: A versatile biocatalyst for organic oxidation-reduction reactions. Bioorg Chem 2016; 68:187-213. [DOI: 10.1016/j.bioorg.2016.08.007] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Revised: 08/08/2016] [Accepted: 08/10/2016] [Indexed: 11/22/2022]
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Activity prediction of substrates in NADH-dependent carbonyl reductase by docking requires catalytic constraints and charge parameterization of catalytic zinc environment. J Comput Aided Mol Des 2015; 29:1057-69. [PMID: 26530855 DOI: 10.1007/s10822-015-9878-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2015] [Accepted: 10/30/2015] [Indexed: 12/27/2022]
Abstract
Molecular docking of substrates is more challenging compared to inhibitors as the reaction mechanism has to be considered. This becomes more pronounced for zinc-dependent enzymes since the coordination state of the catalytic zinc ion is of greater importance. In order to develop a predictive substrate docking protocol, we have performed molecular docking studies of diketone substrates using the catalytic state of carbonyl reductase 2 from Candida parapsilosis (CPCR2). Different docking protocols using two docking methods (AutoDock Vina and AutoDock4.2) with two different sets of atomic charges (AM1-BCC and HF-RESP) for catalytic zinc environment and substrates as well as two sets of vdW parameters for zinc ion were examined. We have selected the catalytic binding pose of each substrate by applying mechanism based distance criteria. To compare the performance of the docking protocols, the correlation plots for the binding energies of these catalytic poses were obtained against experimental Vmax values of the 11 diketone substrates for CPCR2. The best correlation of 0.73 was achieved with AutoDock4.2 while treating catalytic zinc ion in optimized non-bonded (NBopt) state with +1.01 charge on the zinc ion, compared to 0.36 in non-bonded (+2.00 charge on the zinc ion) state. These results indicate the importance of catalytic constraints and charge parameterization of catalytic zinc environment for the prediction of substrate activity in zinc-dependent enzymes by molecular docking. The developed predictive docking protocol described here is in principle generally applicable for the efficient in silico substrate spectra characterization of zinc-dependent ADH.
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Loderer C, Dhoke GV, Davari MD, Kroutil W, Schwaneberg U, Bocola M, Ansorge-Schumacher MB. Investigation of Structural Determinants for the Substrate Specificity in the Zinc-Dependent Alcohol Dehydrogenase CPCR2 fromCandida parapsilosis. Chembiochem 2015; 16:1512-9. [DOI: 10.1002/cbic.201500100] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2015] [Indexed: 11/06/2022]
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Grosch JH, Loderer C, Jestel T, Ansorge-Schumacher M, Spieß AC. Carbonyl reductase of Candida parapsilosis – Stability analysis and stabilization strategy. ACTA ACUST UNITED AC 2015. [DOI: 10.1016/j.molcatb.2014.12.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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Li H, Bhadury PS, Riisager A, Yang S. One-pot transformation of polysaccharides via multi-catalytic processes. Catal Sci Technol 2014. [DOI: 10.1039/c4cy00711e] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Kaufhold D, Fagaschewski J, Sellin D, Strompen S, Liese A, Hilterhaus L. Novel μ-membrane module for online determination of the free fatty acid content in the dispersed phase of oil-in-water emulsions. Anal Bioanal Chem 2014; 406:3157-66. [DOI: 10.1007/s00216-014-7740-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2013] [Revised: 01/18/2014] [Accepted: 03/03/2014] [Indexed: 11/30/2022]
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Man H, Loderer C, Ansorge-Schumacher MB, Grogan G. Structure of NADH-Dependent Carbonyl Reductase (CPCR2) from Candida parapsilosis
Provides Insight into Mutations that Improve Catalytic Properties. ChemCatChem 2014. [DOI: 10.1002/cctc.201300788] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Kara S, Spickermann D, Schrittwieser JH, Weckbecker A, Leggewie C, Arends IWCE, Hollmann F. Access to Lactone Building Blocks via Horse Liver Alcohol Dehydrogenase-Catalyzed Oxidative Lactonization. ACS Catal 2013. [DOI: 10.1021/cs400535c] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Selin Kara
- Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
| | | | - Joerg H. Schrittwieser
- Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
| | | | | | - Isabel W. C. E. Arends
- Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
| | - Frank Hollmann
- Department of Biotechnology, Delft University of Technology, Julianalaan 136, 2628 BL Delft, The Netherlands
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Dafoe JT, Daugulis AJ. Production of 4-valerolactone by an equilibrium-limited transformation in a partitioning bioreactor: impact of absorptive polymer properties. Bioprocess Biosyst Eng 2013; 37:533-42. [DOI: 10.1007/s00449-013-1020-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2013] [Accepted: 07/15/2013] [Indexed: 11/29/2022]
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