Mating tactics and mating system of an aquatic-mating pinniped: the harbor seal, Phoca vitulina

Open water grouping behaviour in harbour seals (Phoca vitulina richardii) of the Salish Sea

Harbour seals (Phoca vitulina) commonly form larger congregations at haul out locations during times of rest and pupping season, but are generally thought to be solitary at sea. Occasionally larger clusters of individuals may be observed swimming near haul out sites, forced bottlenecking channels or mouths of rivers with concentrated prey and restricted space. Recently, isolated occurrences of mass gatherings of harbour seals have been observed in the Salish Sea that were distanced from haul out sites (over 1 km away) or forced bottlenecking regions. In April-June (but primarily May) 2019–2021 juvenile and adult harbour seals in Burrows Pass (Anacortes, WA, USA) were observed in large groups () ranging in size from 6–50 individuals () within 1-2 body lengths of each other and periodically diving down seemingly hunting and chasing prey. These groupings primarily occurred during flood and slack high tides. Based on the surface level activity observed, habitat type, the frequency of individuals using the area for foraging year round and the tidal preferences during the occurrences, it is likely these are foraging events. Similar large groups have been documented () in the South Puget Sound and Central Puget Sound, first observed in 2016 and officially documented in February of 2017. These groupings (from 20–30 to 150+) occurred year round and at varied tidal states. While some sightings were obviously foraging behaviour, others appeared to be resting, traveling or socializing. Open water behaviour of harbour seals is not well documented, and a literature review found no other published accounts of large in-water groupings. Investigation of ecological relationships (like prey spawning, prey abundance, or other environmental correlates) and observation of underwater harbour seal behaviour will aid in determining the reason for this seemingly novel behaviour.

Basking shark sub-surface behaviour revealed by animal-towed cameras

While biologging tags have answered a wealth of ecological questions, the drivers and consequences of movement and activity often remain difficult to ascertain, particularly marine vertebrates which are difficult to observe directly. Basking sharks, the second largest shark species in the world, aggregate in the summer in key foraging sites but despite advances in biologging technologies, little is known about their breeding ecology and sub-surface behaviour. Advances in camera technologies holds potential for filling in these knowledge gaps by providing environmental context and validating behaviours recorded with conventional telemetry. Six basking sharks were tagged at their feeding site in the Sea of Hebrides, Scotland, with towed cameras combined with time-depth recorders and satellite telemetry. Cameras recorded a cumulative 123 hours of video data over an average 64-hour deployment and confirmed the position of the sharks within the water column. Feeding events only occurred within a metre depth and made up ¾ of the time spent swimming near the surface. Sharks maintained similar tail beat frequencies regardless of whether feeding, swimming near the surface or the seabed, where they spent surprisingly up to 88% of daylight hours. This study reported the first complete breaching event and the first sub-surface putative courtship display, with nose-to-tail chasing, parallel swimming as well as the first observation of grouping behaviour near the seabed. Social groups of sharks are thought to be very short term and sporadic, and may play a role in finding breeding partners, particularly in solitary sharks which may use aggregations as an opportunity to breed. In situ observation of basking sharks at their seasonal aggregation site through animal borne cameras revealed unprecedented insight into the social and environmental context of basking shark behaviour which were previously limited to surface observations.

3D genital shape complexity in female marine mammals

Comparisons of 3D shapes have recently been applied to diverse anatomical structures using landmarking techniques. However, discerning evolutionary patterns can be challenging for structures lacking homologous landmarks. We used alpha shape analyses to quantify vaginal shape complexity in 40 marine mammal specimens including cetaceans, pinnipeds, and sirenians. We explored phylogenetic signal and the potential roles of natural and sexual selection on vaginal shape evolution. Complexity scores were consistent with qualitative observations. Cetaceans had a broad range of alpha complexities, while pinnipeds were comparatively simple and sirenians were complex. Intraspecific variation was found. Three-dimensional surface heat maps revealed that shape complexity was driven by invaginations and protrusions of the vaginal wall. Phylogenetic signal was weak and metrics of natural selection (relative neonate size) and sexual selection (relative testes size, sexual size dimorphism, and penis morphology) did not explain vaginal complexity patterns. Additional metrics, such as penile shape complexity, may yield interesting insights into marine mammal genital coevolution. We advocate for the use of alpha shapes to discern patterns of evolution that would otherwise not be possible in 3D anatomical structures lacking homologous landmarks.

Are Icelandic harbor seals acoustically cryptic to avoid predation?

Male harbor seals (Phoca vitulina) produce stereotypic underwater roars during the mating season. It remains unclear to what extent roar structures vary due to predation levels. Here, seal roars from waters with many (Iceland) and few (Denmark and Sweden) predators were compared. Most Icelandic roars included a long pulse train and a pause. Icelandic roars occurred less frequently, lasted longer (20.3 ± 6.5 s), and were recorded with lower received sound levels (98.3 ± 8.9 dB re 1 μPa root mean square) than roars from Denmark and Sweden. Local extrinsic factors may shape sound production in harbor seals more than previously reported.

Machine learning enables improved runtime and precision for bio-loggers on seabirds

Unravelling the secrets of wild animals is one of the biggest challenges in ecology, with bio-logging (i.e., the use of animal-borne loggers or bio-loggers) playing a pivotal role in tackling this challenge. Bio-logging allows us to observe many aspects of animals’ lives, including their behaviours, physiology, social interactions, and external environment. However, bio-loggers have short runtimes when collecting data from resource-intensive (high-cost) sensors. This study proposes using AI on board video-loggers in order to use low-cost sensors (e.g., accelerometers) to automatically detect and record complex target behaviours that are of interest, reserving their devices’ limited resources for just those moments. We demonstrate our method on bio-loggers attached to seabirds including gulls and shearwaters, where it captured target videos with 15 times the precision of a baseline periodic-sampling method. Our work will provide motivation for more widespread adoption of AI in bio-loggers, helping us to shed light onto until now hidden aspects of animals’ lives.

Joseph Korpela et al. demonstrate the use of machine-learning assisted bio-loggers on black-tailed gulls and streaked shearwaters. As video recording is only activated through variations in movement detected by low-cost accelerometers, this method represents improvements to runtime and precision over existing bio-logging technology.

Clear diel patterns in breeding calls of harbor seals (Phoca vitulina) at Hornby Island, British Columbia, Canada

During the breeding season, male harbor seals (Phoca vitulina Linnaeus, 1758) produce underwater calls for sexual advertisement. The daily and seasonal timing of these calls is influenced by female availability (i.e., tidal haul-out patterns, foraging behavior, and oestrus cycle). Therefore, temporal patterns of male calling can provide clues about patterns of female behavior. We collected underwater recordings during the 2014 breeding season at Hornby Island, British Columbia, Canada, and examined the relationships of light level, progression of breeding season, and tide relative to call presence or absence and calling rate. Calls were 15 times more likely to occur at night than during the day. Nocturnal peaks in calling rate have been observed in other harbor seal populations and have been attributed to tidal haul-out patterns and nocturnal foraging of females. In this study, tide level did not have a significant effect on calling rate, and female foraging behavior was not monitored. One acoustic observation of mammal-eating killer whale (Orcinus orca (Linnaeus, 1758)) calls was followed by 48 h of decreased calling rate. We infer that predation risk influences the temporal pattern of male calling at this location and suggest further study to support this hypothesis.

Large-scale molecular diet analysis in a generalist marine mammal reveals male preference for prey of conservation concern

Sex-specific diet information is important in the determination of predator impacts on prey populations. Unfortunately, the diet of males and females can be difficult to describe, particularly when they are marine predators. We combined two molecular techniques to describe haul-out use and prey preferences of male and female harbor seals (Phoca vitulina) from Comox and Cowichan Bay (Canada) during 2012-2013. DNA metabarcoding quantified the diet proportions comprised of prey species in harbor seal scat, and qPCR determined the sex of the individual that deposited each scat. Using 287 female and 260 male samples, we compared the monthly sex ratio with GLMs and analyzed prey consumption relative to sex, season, site, and year with PERMANOVA. The sex ratio between monthly samples differed widely in both years (range = 12%-79% males) and showed different patterns at each haul-out site. Male and female diet differed across both years and sites: Females consumed a high proportion of demersal fish species while males consumed more salmonid species. Diet composition was related to both sex and season (PERMANOVA: R 2 = 27%, p < 0.001; R 2 = 24%, p < 0.001, respectively) and their interaction (PERMANOVA: R 2 = 11%, p < 0.001). Diet differences between males and females were consistent across site and year, suggesting fundamental foraging differences, including that males may have a larger impact on salmonids than females. Our novel combination of techniques allowed for both prey taxonomic and spatiotemporal resolution unprecedented in marine predators.

Ontogeny of vocal rhythms in harbor seal pups: an exploratory study

Puppyhood is a very active social and vocal period in a harbor seal’s life Phoca vitulina. An important feature of vocalizations is their temporal and rhythmic structure, and understanding vocal timing and rhythms in harbor seals is critical to a cross-species hypothesis in evolutionary neuroscience that links vocal learning, rhythm perception, and synchronization. This study utilized analytical techniques that may best capture rhythmic structure in pup vocalizations with the goal of examining whether (1) harbor seal pups show rhythmic structure in their calls and (2) rhythms evolve over time. Calls of 3 wild-born seal pups were recorded daily over the course of 1–3 weeks; 3 temporal features were analyzed using 3 complementary techniques. We identified temporal and rhythmic structure in pup calls across different time windows. The calls of harbor seal pups exhibit some degree of temporal and rhythmic organization, which evolves over puppyhood and resembles that of other species’ interactive communication. We suggest next steps for investigating call structure in harbor seal pups and propose comparative hypotheses to test in other pinniped species.

Temporal and spatial variation in harbor seal (Phoca vitulina L.) roar calls from southern Scandinavia

Male harbor seals gather around breeding sites for competitive mating displays. Here, they produce underwater vocalizations possibly to attract females and/or scare off other males. These calls offer prospects for passive acoustic monitoring. Acoustic monitoring requires a good understanding of natural variation in calling behavior both temporally and among geographically separate sites. Such variation in call structure and calling patterns were studied in harbor seal vocalizations recorded at three locations in Danish and Swedish waters. There was a strong seasonality in the calls from end of June to early August. Vocalizations at two locations followed a diel pattern, with an activity peak at night. Recordings from one location also showed a peak in call rate at high tide. Large geographic variations were obvious in the total duration of the so-called roar call, the duration of the most prominent part of the call (the roar burst), and of percentage of energy in roar burst. A similarly large variation was also found when comparing the recordings from two consecutive years at the same site. Thus, great care must be taken to separate variation attributable to recording conditions from genuine biological differences when comparing harbor seal roars among recording sites and between years.

The multiple functions of male song within the humpback whale (Megaptera novaeangliae) mating system: review, evaluation, and synthesis

Humpback whales (Megaptera novaeangliae) are seasonal breeders, annually migrating from high-latitude summer feeding grounds to low-latitude winter breeding grounds. The social matrix on the winter grounds is a loose network of interacting individuals and groups and notably includes lone males that produce long bouts of complex song that collectively yield an asynchronous chorus. Occasionally, a male will sing while accompanying other whales. Despite a wealth of knowledge about the social matrix, the full characterization of the mating system remains unresolved, without any firm consensus, as does the function of song within that system. Here, I consider and critically analyse three proposed functions of song that have received the most attention in the literature: female attraction to individual singers, determining or facilitating male-male interactions, and attracting females to a male aggregation within the context of a lekking system. Female attraction suggests that humpback song is an advertisement and invitation to females, but field observations and song playback studies reveal that female visits to individual singers are virtually absent. Other observations suggest instead that females might convey their presence to singers (or to other males) through the percussive sounds of flipper or tail slapping or possibly through vocalizations. There is some evidence for male-male interactions, both dominance and affiliative: visits to singers are almost always other lone males not singing at that time. The joiner may be seeking a coalition with the singer to engage cooperatively in attempts to obtain females, or may be seeking to disrupt the song or to affirm his dominance. Some observations support one or the other intent. However, other observations, in part based on the brevity of most pairings, suggest that the joiner is prospecting, seeking to determine whether the singer is accompanying a female, and if not soon departs. In the lekking hypothesis, the aggregation of vocalizing males on a winter ground and the visits there by non-maternal females apparently for mating meet the fundamental definition of a lekking system and its role though communal display in attracting females to the aggregation, although not to an individual singer. Communal singing is viewed as a form of by-product mutualism in which individuals benefit one another as incidental consequences of their own selfish actions. Possibly, communal singing may also act to stimulate female receptivity. Thus, there are both limitations and merit in all three proposals. Full consideration of song as serving multiple functions is therefore necessary to understand its role in the mating system and the forces acting on the evolution of song. I suggest that song may be the prime vector recruiting colonists to new winter grounds pioneered by vagrant males as population pressures increase or as former winter grounds become unavailable or undesirable, with such instances documented relatively recently. Speculatively, song may have evolved historically as an aggregating call during the dynamic ocean conditions and resulting habitat uncertainties in the late Miocene-early Pliocene epochs when Megaptera began to proliferate. Early song may have been comprised of simpler precursor sounds that through natural selection and ritualization evolved into complex song.

Quantitative classification of harbor seal breeding calls in Georgia Strait, Canada

During breeding season, male harbor seals (Phoca vitulina) produce underwater calls used in sexual competition and advertisement. Call characteristics vary among populations, and within-population differences are thought to represent individual variation. However, vocalizations have not been described for several populations of this widely-distributed and genetically diverse species. This study describes the vocal repertoire of harbor seals from British Columbia, Canada. Underwater recordings were made near Hornby Island during the summer of 2014 using a single hydrophone. A wide variability was detected in breeding vocalizations within this single breeding site. Four candidate call types were identified, containing six subtypes. Linear discriminant analysis showed 88% agreement with subjective classification of call types, and 74% agreement for call subtypes. Classification tree analysis gave a 92% agreement with candidate call types, with all splits made on the basis of call duration. Differences in duration may have reflected individual differences among seals. This study suggests that the vocal repertoire of harbor seals in this area comprises a vocal continuum rather than discrete call types. Further work with the ability to localize calls may help to determine whether this complexity represents variability due to propagation conditions, animal orientation, or differences among individual seals.

Fine-scale variability in harbor seal foraging behavior

Understanding the variability of foraging behavior within a population of predators is important for determining their role in the ecosystem and how they may respond to future ecosystem changes. However, such variability has seldom been studied in harbor seals on a fine spatial scale (<30 km). We used a combination of standard and Bayesian generalized linear mixed models to explore how environmental variables influenced the dive behavior of harbor seals. Time-depth recorders were deployed on harbor seals from two haul-out sites in the Salish Sea in 2007 (n = 18) and 2008 (n = 11). Three behavioral bout types were classified from six dive types within each bout; however, one of these bout types was related to haul-out activity and was excluded from analyses. Deep foraging bouts (Type I) were the predominant type used throughout the study; however, variation in the use of bout types was observed relative to haul-out site, season, sex, and light (day/night). The proportional use of Type I and Type II (shallow foraging/traveling) bouts differed dramatically between haul-out sites, seasons, sexes, and whether it was day or night; individual variability between seals also contributed to the observed differences. We hypothesize that this variation in dive behavior was related to habitat or prey specialization by seals from different haul-out sites, or individual variability between seals in the study area. The results highlight the potential influence of habitat and specialization on the foraging behavior of harbor seals, and may help explain the variability in diet that is observed between different haul-out site groups in this population.

Testing predictions of optimal diving theory using animal-borne video from harbour seals (Phoca vitulina concolor)

Optimal diving theory predicts that animals make decisions that maximize their foraging profitability subject to the constraint of oxygen stores. We examined the temporal pattern of prey encounters within a dive from concurrently collected dive data and animal-borne video from a free-ranging pinniped to test predictions of optimal diving theory. Crittercams were deployed on 32 adult male harbour seals (Phoca vitulina concolor De Kay, 1842) at Sable Island, Nova Scotia, Canada, for 3 days each. Deployments resulted in approximately 3 h of video per seal and a total of 2275 capture attempts for 1474 prey encounter events recorded. We found support for seven of the nine selected predictions of optimal diving theory. As predicted, prey encounters increased with bottom duration; dive duration increased with dive depth; and travel duration, bottom duration, and percent bottom duration decreased over a wide range of travel durations. Descent duration did increase with dive depth, and seals terminated dives earlier when no prey were encountered and when prey were encountered later in a dive. Contrary to prediction, bottom duration did not increase and then decrease for short travel durations and dives were not terminated earlier when travel durations were short and prey encounter rate was low.

Male reproductive success and its behavioural correlates in a polygynous mammal, the Galápagos sea lion (Zalophus wollebaeki)

Sexual selection theory predicts competitive males and choosy females. Nevertheless, since molecular marker-based studies, paternity outside the expected mating patterns has increasingly been described. Even in highly polygynous systems, where paternity is expected to be strongly skewed towards large, dominant males, alternative mating tactics have been suggested. We examined reproductive success in the polygynous Galápagos sea lion (Zalophus wollebaeki). Semiaquatic territoriality allows females to move freely and may lower the degree of polygyny otherwise suggested by both territorial behaviour and strong sexual dimorphism. We assigned paternities with 22 microsatellites and analysed how male reproductive success was related to size, dominance status, intra-sexual agonistic behaviour, proximity to females, and attendance in the colony. Male behaviour was consistent across two seasons for all parameters under consideration. Attendance was by far the most important determinant of paternal success. Skew in reproductive success towards large, dominant males was weak and dominance status played no role. This appears to be caused by an extremely long reproductive season lasting five or more months, making it difficult for any male to monopolize receptive females. Females seem to choose displaying males that were present in the colony for a long time rather than dominance per se. Sexual dimorphism in Galápagos sea lions may thus be more influenced by selection for fasting than fighting ability. Our data provide further evidence for alternative mating tactics, as several males gained relatively high reproductive success despite short attendance and hardly any involvement in agonistic interactions.

Alternative mating tactics in the New Zealand fur seal (Arctocephalus forsteri): when non-territorial males are successful too

In polygynous mammals, the status of many males does not allow them to have a high social rank and theory predicts selection for alternative mating tactics. Alternative tactics were suggested to explain discrepancies between mating and paternity successes in several pinniped species. However, information on alternative tactics in fur seals is limited. Here, we focus on the polygynous New Zealand fur seal, Arctocephalus forsteri, predicting that competition for females is likely to cause a diversification of male mating tactics and that non-territorial tactics can yield reproductive success. We describe the behaviour of 38 males in a medium to large colony. Paternity success was assessed using CERVUS and PASOS, from a pool of 82 pups sampled at the study site and at neighbouring breeding areas. To see whether size is correlated with mating tactic, the length of 17 males was estimated using photogrammetry. Cluster analysis identified three male behavioural profiles: one corresponding to large territorial males and two illustrating alternative tactics employed by smaller non-territorial males. Of the 13 pups born at the study site that were assigned a father, eight were sired by three territorial males and five were sired by non-territorial males. Our study highlights that holding a territory is not a necessary condition for reproductive success in all otariids.

A new 'view' of ecology and conservation through animal-borne video systems

Over the past three decades, technological advances for monitoring wild animals have expanded the ability of ecologists to study animal behavior and space use. Currently, researchers are deploying animal-borne video and environmental data collection systems (AVEDs), which enable researchers to see what the animal sees in the field. AVEDs record fine-scale movements as well as features of the surrounding environment and thus provide essential context for understanding animal decisions and interactions with other individuals. These fine-scale data are often crucial for understanding potential conservation threats to species of concern. Here, we discuss the development and research potential offered by AVEDs. The benefits of AVEDs are greatest in hypothesis-driven studies that require a fine-scale perspective that other technologies cannot offer.