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Li X, Zhang S, Guo R, Xiao X, Liu B, Mahmoud RK, Abukhadra MR, Qu R, Wang Z. Transformation and Degradation of PAH Mixture in Contaminated Sites: Clarifying Their Interactions with Native Soil Organisms. TOXICS 2024; 12:361. [PMID: 38787140 PMCID: PMC11126024 DOI: 10.3390/toxics12050361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 05/08/2024] [Accepted: 05/10/2024] [Indexed: 05/25/2024]
Abstract
Soil contamination of polycyclic aromatic hydrocarbons (PAHs), especially caused by the mixture of two or more PAHs, raised great environmental concerns. However, research on the migration and transformation processes of PAHs in soils and their interactions with native communities is limited. In this work, soil samples from uncontaminated sites around the industrial parks in Handan, Hengshui, and Shanghai were artificially supplemented with three concentrations of anthracene (Ant), 9-chloroanthracene (9-ClAnt), benzopyrene (BaP), and chrysene (Chr). Ryegrass was planted to investigate the degradation of PAHs and its interaction with native soil organisms in the constructed ryegrass-microbe-soil microcosmic system. The bacterial and fungal communities in soil were affected by PAHs; their species diversity and relative abundance changed after exposure to different concentrations of PAHs, among which Lysobacter, Bacillus, Pseudomonas, and Massilia bacteria were correlated to the degradation of PAHs. On the 56th day, the contents of BaP, Chr, and Ant decreased with the degradation process, while the degradation of 9-ClAnt was limited. Nineteen intermediates, including hydroxylation and carboxylated compounds, were identified. The present research would help clarify the potential interactions between PAHs and native organisms in contaminated sites, providing fundamental information for evaluating the transformation risks of PAHs in the natural environment.
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Affiliation(s)
- Xiaoyu Li
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Shengnan Zhang
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Ruixue Guo
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Xuejing Xiao
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Boying Liu
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | | | - Mostafa R Abukhadra
- Materials Technologies and Their Applications Lab, Faculty of Science, Beni Suef University, Beni Suef 62521, Egypt
| | - Ruijuan Qu
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
| | - Zunyao Wang
- State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210023, China
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Yadav A, Batra D, Kaushik P, Mohanta TK. Abundance and distribution of arbuscular mycorrhizal fungi associated with oil-yielding plants. J Basic Microbiol 2023; 63:814-827. [PMID: 37010016 DOI: 10.1002/jobm.202300012] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/01/2023] [Accepted: 03/12/2023] [Indexed: 04/04/2023]
Abstract
Due to their role in nutrient transmission, arbuscular mycorrhizal fungi (AMF) are widespread plant root symbionts. They may improve plant production by altering plant community structure and function. Therefore, a study was conducted in the state of Haryana to analyze the distribution pattern, diversity, and association of different AMF species with oil-yielding plants. The results of the study revealed the percentage of root colonization, sporulation, and diversity of fungal species associated with the selected 30 oil-yielding plants. The percentage root colonization ranged from 0% to 100%, the highest in Helianthus annuus (100.00 ± 0.00) and Zea mays (100.00 ± 0.00) and the least in Citrus aurantium (11.87 ± 1.43). At the same time, there was no root colonization in the Brassicaceae family. The number of AMF spores present in 50 g of soil samples varied from 17.41 ± 5.28 to 497.2 ± 8.38, with maximum spore population in Glycine max (497.2 ± 8.38) and minimum in Brassica napus (17.41 ± 5.28). Besides, the presence of several species of different genera of AMF was reported in all the studied oil-yielding plants, that is, 60 AMF belonging to six genera viz. Acaulospora, Entrophospora, Glomus, Gigaspora, Sclerocystis, and Scutellospora were observed. Overall, this study will promote AMF usage in oil-yielding plants.
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Affiliation(s)
- Alpa Yadav
- Department of Botany, Indra Gandhi University, Meerpur, Rewari, India
| | - Divya Batra
- Department of Botany, Kurukshetra University, Kurukshetra, India
| | - Prashant Kaushik
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, Spain
| | - Tapan K Mohanta
- Natural and Medical Sciences Research Center, University of Nizwa, Nizwa, Oman
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Singh AK, Zhu X, Chen C, Yang B, Pandey VC, Liu W, Singh N. Investigating the recovery in ecosystem functions and multifunctionality after 10 years of natural revegetation on fly ash technosol. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 875:162598. [PMID: 36882140 DOI: 10.1016/j.scitotenv.2023.162598] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 02/27/2023] [Accepted: 02/28/2023] [Indexed: 06/18/2023]
Abstract
Technogenic soil (technosol) developed from coal fly ash (FA) landfilling has been considered a critical environmental problem worldwide. Drought-tolerant plants often naturally grow on FA technosol. However, the impact of these natural revegetations on the recovery of multiple ecosystem functions (multifunctionality) remains largely unexplored and poorly understood. Here we assessed the response of multifunctionality, including nutrient cycling (i.e., carbon, nitrogen, and phosphorus), carbon storage, glomalin-related soil protein (GRSP), plant productivity, microbial biomass carbon (MBC), microbial processes (soil enzyme activities), and soil chemical properties (pH and electrical conductivity; EC) to FA technosol ten years' natural revegetation with different multipurpose species in Indo-Gangetic plain, and identified the key factors regulating ecosystem multifunctionality during reclamation. We evaluated four dominant revegetated species: Prosopis juliflora, Saccharum spontaneum, Ipomoea carnea, and Cynodon dactylon. We found that natural revegetation initiated the recovery of ecosystem multifunctionality on technosol, with greater recovery under higher biomass-producing species (P. juliflora and S. spontaneum) than lower biomass-producing ones (I. carnea and C. dactylon). The individual functions (11 of the total 16 variables) at higher functionality (70 % threshold) also exhibited this pattern among revegetated stands. Multivariate analyses revealed that most of the variables (except EC) significantly correlated with multifunctionality, indicating the capability of multifunctionality to consider the tradeoff between individual functions. We further performed structural equation modeling (SEM) to detect the effect of vegetation, pH, nutrients, and microbial activity (MBC and microbial processes) on ecosystem multifunctionality. Our SEM model predicted 98 % of the variation in multifunctionality and confirmed that the indirect effect of vegetation mediated by microbial activity is more important for multifunctionality than their direct effect. Collectively, our results demonstrate that FA technosol revegetation with high biomass-producing multipurpose species promotes ecosystem multifunctionality and emphasizes the significance of microbial activity in the recovery and maintenance of ecosystem attributes.
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Affiliation(s)
- Ashutosh Kumar Singh
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Yunnan 666303, China; Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India.
| | - Xiai Zhu
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Yunnan 666303, China
| | - Chunfeng Chen
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Yunnan 666303, China
| | - Bin Yang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Yunnan 666303, China
| | - Vimal Chandra Pandey
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India; Department of Environmental Science, Babasaheb Bhimrao Ambedkar University, Lucknow, Uttar Pradesh 226025, India.
| | - Wenjie Liu
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Menglun, Yunnan 666303, China.
| | - Nandita Singh
- Plant Ecology and Environmental Science Division, CSIR-National Botanical Research Institute, Lucknow, Uttar Pradesh 226001, India
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Goswami V, Deepika S, Diwakar S, Kothamasi D. Arbuscular mycorrhizas amplify the risk of heavy metal transfer to human food chain from fly ash ameliorated agricultural soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2023; 329:121733. [PMID: 37119999 DOI: 10.1016/j.envpol.2023.121733] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Revised: 03/14/2023] [Accepted: 04/26/2023] [Indexed: 05/03/2023]
Abstract
Soil contaminants threaten global food security by posing threats to food safety through food chain pollution. Fly ash is a potential agent of soil contamination that contains heavy metals and hazardous pollutants. However, being rich in macro- and micronutrients that have direct beneficial effects on plant growth, fly ash has been recommended as a low-cost soil ameliorant in agriculture in countries of the Global South. Arbuscular mycorrhizal fungi (AMF), ubiquitous in agricultural soils, enhance efficiency of plant nutrient uptake from soils but can equally increase uptake of toxic pollutants from fly ash ameliorated soils to edible crop tissues. We investigated AMF-mediated amplification of nutrient and heavy metal uptake from fly ash amended soils to shoots, roots and grains of barley. We used a microcosm-based experiment to analyse the impacts of fly ash amendments to soil in concentrations of 0 (control), 15, 30 or 50% respectively, on root colonization by AMF Rhizophagus irregularis and AMF-mediated transfer of N, P and heavy metals: Ni, Co, Pb and Cr to barley tissues. These concentrations of fly ash are equivalent to 0, 137, 275 and 458 t ha-1 respectively, in soil. Root AMF colonization correlated negatively with fly ash concentration and was not detected at 50% fly ash amendment. Shoots, roots and grains of mycorrhizal barley grown with 15, 30 and 50% fly ash amendments had significantly higher concentrations of Ni, Co, Pb and Cr compared to the control and their respective non-mycorrhizal counterparts. Presence of heavy metals in barley plants grown with fly ash amended soil and their increased AMF-mediated translocation to edible grains may significantly enhance the volume of heavy metals entering the human food chain. We recommend careful assessment of manipulation of agricultural soils with fly ash as heavy metal accumulation in agricultural soils and human tissues may cause irreversible damage.
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Affiliation(s)
- Vikrant Goswami
- Laboratory of Soil Biology and Microbial Ecology, Department of Environmental Studies, University of Delhi, Delhi, 110007, India
| | - Sharma Deepika
- Laboratory of Soil Biology and Microbial Ecology, Department of Environmental Studies, University of Delhi, Delhi, 110007, India; Department of Botany, Zakir Husain Delhi College, University of Delhi, Delhi, 110002, India
| | - Swati Diwakar
- Department of Environmental Studies, University of Delhi, Delhi, 110007, India
| | - David Kothamasi
- Laboratory of Soil Biology and Microbial Ecology, Department of Environmental Studies, University of Delhi, Delhi, 110007, India; Strathclyde Centre for Environmental Law and Governance, University of Strathclyde, G4 0LT, Glasgow, United Kingdom.
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Kumar R, Thangaraju MM, Kumar M, Thul ST, Pandey VC, Yadav S, Singh L, Kumar S. Ecological restoration of coal fly ash-dumped area through bamboo plantation. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2021; 28:10.1007/s11356-021-12995-7. [PMID: 33641101 DOI: 10.1007/s11356-021-12995-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2020] [Accepted: 02/11/2021] [Indexed: 06/12/2023]
Abstract
The present study entails the phytoremediation potential of different bamboo species on 5-year-old FA-dumped site near Koradi thermal power plant of Nagpur, Maharashtra, India. The selected FA-dumped site was treated with farmyard manure, press mud, and bio fertilizer followed by plantation of six promising species of bamboo namely Bambusa balcooa Roxb., Dendrocalamus stocksii (Munro.) M. Kumar, Remesh and Unnikrishnan, Bambusa bambos (L.) Voss, Bambusa wamin E.G. Camus, Bambusa vulgaris var. striata (Lodd. ex Lindl.) Gamble, and Bambusa vulgaris var. vittata Riviere and Riviere. The experimental results indicated that the organic input in the FA-dumped site nourished the soil by improving its physico-chemical, and biological characteristics. The results revealed the contamination of the site with different trace elements in varied quantity including Cr (89.29 mg kg-1), Zn (84.77 mg kg-1), Ni (28.84 mg kg-1), Cu (22.91 mg kg-1), Li (19.65 mg kg-1), Pb (13.47 mg kg-1), and Cd (2.35 mg kg-1). A drastic reduction in concentration of heavy metals in FA was observed after 1 year of bamboo plantation as compared to the initial condition. The results showed that bamboo species are good excluders of Ba, Co, Cr, Li, Ni, Mn, and Zn, whereas they are good accumulators of Cd, Pb, and Cu. The values of biochemical parameters, such as pH, total chlorophyll, ascorbic acid (AA), and relative water content of all the bamboo leaves ranged from 5.11-5.70, 1.56-6.33 mg g-1, 0.16-0.19 mg g-1, and 60.23-76.68%, respectively. It is thereby concluded that the bamboo plantation with biofertilizers and organic amendments may indicate adaptive response to environmental pollution on FA-dumped site.
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Affiliation(s)
- Raushan Kumar
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, Jharkhand, 835 205, India
| | - Mohan Manu Thangaraju
- CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440 020, India
| | - Manoj Kumar
- Department of Environmental Sciences, Central University of Jharkhand, Ranchi, Jharkhand, 835 205, India
| | - Sanjog Tarachand Thul
- CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440 020, India
| | - Vimal Chandra Pandey
- Department of Environmental Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, Uttar Pradesh, 226 025, India
| | - Swati Yadav
- CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440 020, India
| | - Lal Singh
- CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440 020, India.
| | - Sunil Kumar
- CSIR-National Environmental Engineering Research Institute, Nehru Marg, Nagpur, Maharashtra, 440 020, India.
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Park JM, Hong JW, Lee W, Lee BH, You YH. Fungal Clusters and Their Uniqueness in Geographically Segregated Wetlands: A Step Forward to Marsh Conservation for a Wealth of Future Fungal Resources. MYCOBIOLOGY 2020; 48:351-363. [PMID: 33177915 PMCID: PMC7580721 DOI: 10.1080/12298093.2020.1796413] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Here, we investigated fungal microbiota in the understory root layer of representative well-conserved geographically segregated natural wetlands in the Korean Peninsula. We obtained 574,143 quality fungal sequences in total from soil samples in three wetlands, which were classified into 563 operational taxonomic units (OTU), 5 phyla, 84 genera. Soil texture, total nitrogen, organic carbon, pH, and electrical conductivity of soil were variable between geographical sites. We found significant differences in fungal phyla distribution and ratio, as well as genera variation and richness between the wetlands. Diversity was greater in the Jangdo islands wetland than in the other sites (Chao richness/Shannon/Simpson's for wetland of the Jangdo islands: 283/6.45/0.97 > wetland of the Mt. Gariwang primeval forest: 169/1.17/0.22 > wetland of the Hanbando geology: 145/4.85/0.91), and this variance corresponded to the confirmed number of fungal genera or OTUs (wetlands of Jangdo islands: 42/283 > of Mt. Gariwang primeval forest: 32/169 > of the Hanbando geology: 25/145). To assess the uniqueness of the understory root layer fungus taxa, we analyzed fungal genera distribution. We found that the percentage of fungal genera common to two or three wetland sites was relatively low at 32.3%, while fungal genera unique to each wetland site was 67.7% of the total number of identified fungal species. The Jangdo island wetland had higher fungal diversity than did the other sites and showed the highest level of uniqueness among fungal genera (Is. Jangdo wetland: 34.5% > wetland of Mt. Gariwang primeval forest: 28.6% > wetland of the Hanbando geology: 16.7%).
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Affiliation(s)
- Jong Myong Park
- Water Quality Research Institute, Waterworks Headquarters Incheon Metropolitan City, Incheon, Republic of Korea
| | - Ji Won Hong
- Department of Hydrogen and Renewable Energy, Kyungpook National University, Daegu, Republic of Korea
| | - Woong Lee
- Research Institute for Dok-do and Ulleung-do Island, Kyungpook National University, Daegu, Republic of Korea
| | - Byoung-Hee Lee
- Biological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, Republic of Korea
| | - Young-Hyun You
- Microorganism Resources Division, National Institute of Biological Resources, Incheon, Republic of Korea
- CONTACT Young-Hyun You
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Melo CD, Walker C, Freitas H, Machado AC, Borges PAV. Distribution of arbuscular mycorrhizal fungi (AMF) in Terceira and São Miguel Islands (Azores). Biodivers Data J 2020; 8:e49759. [PMID: 32280296 PMCID: PMC7142165 DOI: 10.3897/bdj.8.e49759] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Accepted: 03/08/2020] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND The data, presented here, come from samples collected during three research projects which aimed to assess the impact of land-use type on Arbuscular Mycorrhizal Fungi (AMF) diversity and community composition in pastures of Terceira Island (Azores, Macaronesia, Portugal) and also in the native forest of two Azorean Islands (Terceira and São Miguel; Azores, Macaronesia, Portugal). Both projects contributed to improving the knowledge of AMF community structure at both local and regional scales. NEW INFORMATION Little is known on the AMF communities from Azores islands and this study reports the first survey in two Azorean Islands (Terceira and São Miguel). A total of 18,733 glomeromycotan spores were classified at the species level from 244 field soil samples collected in three different habitat types - native forests (dominated by Juniperus brevifolia and Picconia azorica), semi-natural and intensively-managed pastures. Thirty-seven distinct spore morphotypes, representing ten glomeromycotan families, were detected. Species of the family Acaulosporaceae dominated the samples, with 13 species (38% of the taxa), followed by Glomeraceae (6 spp.), Diversisporaceae (4 spp.), Archaeosporaceae (3 spp.), Claroideoglomeraceae (3 spp.), Gigasporaceae (3 spp.), Ambisporaceae and Paraglomeraceae, both with the same number of AMF species (2 spp.), Sacculosporaceae (1 sp.) and Entrophospora (family insertae sedis). Members of the family Acaulosporaceae occurred almost exclusively in the native forests especially associated with the Picconia azorica rhizosphere, while members of Gigasporaceae family showed a high tendency to occupy the semi-natural pastures and the native forests of Picconia azorica. Members of Glomeraceae family were broadly distributed by all types of habitat which confirm the high ecological plasticity of this AMF family to occupy the more diverse habitats.
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Affiliation(s)
- Catarina Drumonde Melo
- cE3c – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias e do Ambiente, Rua Capitão João d’Ávila, São Pedro, 9700-042, Angra do Heroísmo, Terceira, Azores, PortugalcE3c – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias e do Ambiente, Rua Capitão João d’Ávila, São Pedro, 9700-042Angra do Heroísmo, Terceira, AzoresPortugal
- CFE - Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3001-401, Coimbra, PortugalCFE - Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3001-401CoimbraPortugal
| | - Christopher Walker
- Royal Botanic Garden Edinburgh, 20A Inverleith Row, EH3 5LR, Edinburgh, United KingdomRoyal Botanic Garden Edinburgh, 20A Inverleith Row, EH3 5LREdinburghUnited Kingdom
- School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Perth WA 6009, Crawley, AustraliaSchool of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Perth WA 6009CrawleyAustralia
| | - Helena Freitas
- CFE – Centre for FunctionalCFE - Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3001-401, Coimbra, PortugalCFE – Centre for FunctionalCFE - Centre for Functional Ecology, Department of Life Sciences, University of Coimbra, 3001-401CoimbraPortugal
| | - Artur Câmara Machado
- CBA-UAç – Biotechnology Center of Azores, Universidade dos Açores - Departamento de Ciências e Engenharia do Ambiente, Rua Capitão D´Ávila, 9700-042, Angra do Heroísmo, PortugalCBA-UAç – Biotechnology Center of Azores, Universidade dos Açores - Departamento de Ciências e Engenharia do Ambiente, Rua Capitão D´Ávila, 9700-042Angra do HeroísmoPortugal
| | - Paulo A. V. Borges
- cE3c – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias e do Ambiente, Rua Capitão João d’Ávila, São Pedro, 9700-042, Angra do Heroísmo, Terceira, Azores, PortugalcE3c – Centre for Ecology, Evolution and Environmental Changes / Azorean Biodiversity Group and Universidade dos Açores - Departamento de Ciências Agrárias e do Ambiente, Rua Capitão João d’Ávila, São Pedro, 9700-042Angra do Heroísmo, Terceira, AzoresPortugal
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Mahdhi M, Tounekti T, Abada E, Al-Faifi Z, Khemira H. Diversity of arbuscular mycorrhizal fungi associated with acacia trees in southwestern Saudi Arabia. J Basic Microbiol 2019; 60:322-330. [PMID: 31840835 DOI: 10.1002/jobm.201900471] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Revised: 11/17/2019] [Accepted: 12/02/2019] [Indexed: 11/11/2022]
Abstract
Acacia species produce extensive, deep root systems with a capacity to develop mycorrhizal symbioses that facilitate plant nutrition via enhanced soil nutrient absorption. This study aimed to evaluate the mycorrhizal status and the diversity of arbuscular mycorrhizal fungi (AMF) associated with acacia trees in southwestern Saudi Arabia. The mycorrhizal status varied greatly between species. The highest values of AMF root colonization and spore density were observed in the roots and in the rhizospheric soil of Acacia negrii. DNA was extracted from plant roots and the AMF large subunit ribosomal DNA (LSU rDNA) was amplified by a nested polymerase chain reaction. A total of 274 LSU rDNA cloned fragments from roots of the three acacia trees were sequenced. Phylogenetic analysis revealed a high AMF diversity, especially in Acacia tortilis. On the basis of LSU rDNA sequences, AMF was grouped into five genera: Glomus, Claroideoglomus, Acaulospora, Gigaspora, and Scutellospora. The genus Glomus fungi were the dominant colonizers of all three acacia species, while the genus Scutellospora fungi were found only in A. tortilis roots. The high AMF-acacia diversity suggests that AMF plays an important role in the sustainability of acacia species in the arid environment.
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Affiliation(s)
- Mosbah Mahdhi
- Centre for Environmental Research and Studies, Jazan University, Jazan, Saudi Arabia
| | - Taieb Tounekti
- Centre for Environmental Research and Studies, Jazan University, Jazan, Saudi Arabia
| | - Emad Abada
- Department of Biology, Faculty of Science, Jazan University, Jazan, Saudi Arabia
| | - Zarraq Al-Faifi
- Centre for Environmental Research and Studies, Jazan University, Jazan, Saudi Arabia.,Department of Biology, Faculty of Science, Jazan University, Jazan, Saudi Arabia
| | - Habib Khemira
- Centre for Environmental Research and Studies, Jazan University, Jazan, Saudi Arabia
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Krishnamoorthy R, Premalatha N, Karthik M, Anandham R, Senthilkumar M, Gopal NO, Selvakumar G, Sa T. Molecular Markers for the Identification and Diversity Analysis of Arbuscular Mycorrhizal Fungi (AMF). Fungal Biol 2017. [DOI: 10.1007/978-3-319-34106-4_8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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10
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Ambardar S, Singh HR, Gowda M, Vakhlu J. Comparative Metagenomics Reveal Phylum Level Temporal and Spatial Changes in Mycobiome of Belowground Parts of Crocus sativus. PLoS One 2016; 11:e0163300. [PMID: 27685092 PMCID: PMC5042540 DOI: 10.1371/journal.pone.0163300] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2016] [Accepted: 09/07/2016] [Indexed: 11/27/2022] Open
Abstract
Plant-fungal associations have been explored by routine cultivation based approaches and cultivation based approaches cannot catalogue more than 5% of fungal diversity associated with any niche. In the present study, an attempt has been made to catalogue fungal diversity associated with belowground parts i.e. rhizosphere and cormosphere, of Crocus sativus (an economically important herb) during two growth stages, using cultivation independent ITS gene targeted approach, taking bulk soil as reference. The 454 pyrosequencing sequence data analysis suggests that the fungal diversity was niche and growth stage specific. Fungi diversity, in the present case, was not only different between the two organs (roots and corm) but the dominance pattern varies between the cormosphere during two growth stages. Zygomycota was dominant fungal phylum in the rhizosphere whereas Basidiomycota was dominant in cormosphere during flowering stage. However in cormosphere though Basidiomycota was dominant phylum during flowering stage but Zygomycota was dominant during dormant stage. Interestingly, in cormosphere, the phyla which was dominant at dormant stage was rare at flowering stage and vice-versa (Basidiomycota: Flowering = 93.2% Dormant = 0.05% and Zygomycota: Flowering = 0.8% Dormant = 99.7%). At genus level, Rhizopus was dominant in dormant stage but was rare in flowering stage (Rhizopus: Dormant = 99.7% Flowering = 0.55%). This dynamics is not followed by the bulk soil fungi which was dominated by Ascomycota during both stages under study. The genus Fusarium, whose species F. oxysporum causes corm rot in C. sativus, was present during both stages with slightly higher abundance in roots. Interestingly, the abundance of Rhizopus varied a great deal in two stages in cormosphere but the abundance of Fusarium was comparable in two growth stages (Bulk soil Flowering = 0.05%, Rhizosphere Flowering = 1.4%, Cormosphere Flowering = 0.06%, Bulk soil Dormant = 2.47% and cormosphere dormant = 0.05%). This is the first report on the fungal diversity associated with the root of Crocus sativus and first report on the fungi associated with corm of any plant with the temporal and spatial variation in the fungal community structure.
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Affiliation(s)
- Sheetal Ambardar
- School of Biotechnology, University of Jammu, Jammu, India
- Next Generation Genomics Facility, C-CAMP, NCBS, Bangalore, India
| | | | - Malali Gowda
- Next Generation Genomics Facility, C-CAMP, NCBS, Bangalore, India
| | - Jyoti Vakhlu
- School of Biotechnology, University of Jammu, Jammu, India
- * E-mail:
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Response of Soil Fungi Community Structure to Salt Vegetation Succession in the Yellow River Delta. Curr Microbiol 2016; 73:595-601. [PMID: 27449214 DOI: 10.1007/s00284-016-1099-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2016] [Accepted: 06/13/2016] [Indexed: 10/21/2022]
Abstract
High-throughput sequencing technology was used to reveal the composition and distribution of fungal community structure in the Yellow River Delta under bare land and four kinds of halophyte vegetation (saline seepweed, Angiospermae, Imperata and Apocynum venetum [A. venetum]). The results showed that the soil quality continuously improved with the succession of salt vegetation types. The soil fungi richness of mild-salt communities (Imperata and A. venetum) was relatively higher, with Shannon index values of 5.21 and 5.84, respectively. The soil fungi richness of severe-salt-tolerant communities (saline seepweed, Angiospermae) was relatively lower, with Shannon index values of 4.64 and 4.66, respectively. The UniFrac metric values ranged from 0.48 to 0.67 when the vegetation was in different succession stages. A total of 60,174 valid sequences were obtained for the five vegetation types, and they were classified into Ascomycota, Basidiomycota, Chytridiomycota, Glomeromycota and Mucoromycotina. Ascomycota had the greatest advantage among plant communities of Imperata and A. venetum, as indicated by relative abundances of 2.69 and 69.97 %, respectively. Basidiomycota had the greatest advantage among mild-salt communities of saline seepweed and Angiospermae, with relative abundances of 9.43 and 6.64 %, respectively. Soil physical and chemical properties were correlated with the distribution of the fungi, and Mucor was significantly correlated with soil moisture (r = 0.985; P < 0.01). Soil quality, salt vegetation and soil fungi were influenced by each other.
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Sýkorová Z, Rydlová J, Slavíková R, Ness T, Kohout P, Püschel D. Forest reclamation of fly ash deposit: a field study on appraisal of mycorrhizal inoculation. Restor Ecol 2015. [DOI: 10.1111/rec.12301] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Zuzana Sýkorová
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
| | - Jana Rydlová
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
| | - Renata Slavíková
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
- Institute of Microbiology, Academy of Sciences of the Czech Republic; Vídeňská, 1083 Praha 4-Krč, 142 20 Czech Republic
| | - Tara Ness
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
- Present address: 4718, 11th Avenue NE Apt 16, Seattle, WA 98115; U.S.A
| | - Petr Kohout
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
| | - David Püschel
- Institute of Botany; Academy of Sciences of the Czech Republic; Zámek 1 Průhonice 252 43 Czech Republic
- Institute of Microbiology, Academy of Sciences of the Czech Republic; Vídeňská, 1083 Praha 4-Krč, 142 20 Czech Republic
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Channabasava A, Lakshman HC, Muthukumar T. Fly ash mycorrhizoremediation through Paspalum scrobiculatum L., inoculated with Rhizophagus fasciculatus. C R Biol 2015; 338:29-39. [DOI: 10.1016/j.crvi.2014.11.002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2014] [Revised: 09/15/2014] [Accepted: 11/12/2014] [Indexed: 11/26/2022]
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Babu AG, Shea PJ, Oh BT. Trichoderma sp. PDR1-7 promotes Pinus sylvestris reforestation of lead-contaminated mine tailing sites. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014; 476-477:561-567. [PMID: 24496029 DOI: 10.1016/j.scitotenv.2013.12.119] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2013] [Revised: 12/28/2013] [Accepted: 12/28/2013] [Indexed: 06/03/2023]
Abstract
Vegetation is critical to stabilize and remediate mine tailing sites, but plant growth is often poor due to toxicity from heavy metal(loid)s (HMs). A non-symbiotic endophytic fungus, Trichoderma sp. PDR1-7, isolated from Pb-contaminated mine tailing soil, exhibited both high tolerance to HMs and desirable plant growth-promoting characteristics. PDR1-7 promoted HM solubilization in mine tailing soil and removed significant amounts of Pb and other HMs from liquid media containing single and multiple metals. Pb removal efficiency increased with initial pH from 4 to 6 and with Pb concentration from 100 to 125 mg L(-1). Inoculating soil with PDR1-7 significantly increased nutrient availability and seedling growth, chlorophyll and protein contents, as well as antioxidative enzyme (superoxide dismutase) activity. A decrease in malondialdehyde indicated less oxidative stress. HM concentrations were much higher in Pinus sylvestris roots when PDR1-7 was present. These observations suggest the utility of Trichoderma sp. PDR1-7 for pine reforestation and phytoremediation of Pb-contaminated mine soil.
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Affiliation(s)
- A Giridhar Babu
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Chonbuk National University, Iksan 570-752, Republic of Korea
| | - Patrick J Shea
- School of Natural Resources, University of Nebraska-Lincoln, Lincoln, NE 68583-0817, USA
| | - Byung-Taek Oh
- Division of Biotechnology, Advanced Institute of Environment and Bioscience, College of Environmental and Bioresource Sciences, Chonbuk National University, Iksan 570-752, Republic of Korea.
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