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Yang Z, Zhang Y, Lv Y, Yan W, Xiao X, Sun B, Ma H. H 2 Metabolism revealed by metagenomic analysis of subglacial sediment from East Antarctica. J Microbiol 2019; 57:1095-1104. [PMID: 31758395 DOI: 10.1007/s12275-019-9366-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 10/14/2019] [Accepted: 11/06/2019] [Indexed: 01/17/2023]
Abstract
Subglacial ecosystems harbor diverse chemoautotrophic microbial communities in areas with limited organic carbon, and lithological H2 produced during glacial erosion has been considered an important energy source in these ecosystems. To verify the H2-utilizing potential there and to identify the related energy-converting metabolic mechanisms of these communities, we performed metagenomic analysis on subglacial sediment samples from East Antarctica with and without H2 supplementation. Genes coding for several [NiFe]-hydrogenases were identified in raw sediment and were enriched after H2 incubation. All genes in the dissimilatory nitrate reduction and denitrification pathways were detected in the subglacial community, and the genes coding for these pathways became enriched after H2 was supplied. Similarly, genes transcribing key enzymes in the Calvin cycle were detected in raw sediment and were also enriched. Moreover, key genes involved in H2 oxidization, nitrate reduction, oxidative phosphorylation, and the Calvin cycle were identified within one metagenome-assembled genome belonging to a Polaromonas sp. As suggested by our results, the microbial community in the subglacial environment we investigated consisted of chemoautotrophic populations supported by H2 oxidation. These results further confirm the importance of H2 in the cryosphere.
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Affiliation(s)
- Zhifeng Yang
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, P. R. China.,State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, P. R. China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Yu Zhang
- State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, P. R. China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Yongxin Lv
- State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, P. R. China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Wenkai Yan
- State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, P. R. China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Xiang Xiao
- State Key Laboratory of Ocean Engineering, Shanghai Jiao Tong University, Shanghai, P. R. China.,School of Oceanography, Shanghai Jiao Tong University, Shanghai, P. R. China
| | - Bo Sun
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, P. R. China
| | - Hongmei Ma
- SOA Key Laboratory for Polar Science, Polar Research Institute of China, Shanghai, P. R. China.
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2
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Lamarche-Gagnon G, Wadham JL, Sherwood Lollar B, Arndt S, Fietzek P, Beaton AD, Tedstone AJ, Telling J, Bagshaw EA, Hawkings JR, Kohler TJ, Zarsky JD, Mowlem MC, Anesio AM, Stibal M. Greenland melt drives continuous export of methane from the ice-sheet bed. Nature 2019; 565:73-77. [PMID: 30602750 DOI: 10.1038/s41586-018-0800-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Accepted: 11/08/2018] [Indexed: 12/24/2022]
Abstract
Ice sheets are currently ignored in global methane budgets1,2. Although ice sheets have been proposed to contain large reserves of methane that may contribute to a rise in atmospheric methane concentration if released during periods of rapid ice retreat3,4, no data exist on the current methane footprint of ice sheets. Here we find that subglacially produced methane is rapidly driven to the ice margin by the efficient drainage system of a subglacial catchment of the Greenland ice sheet. We report the continuous export of methane-supersaturated waters (CH4(aq)) from the ice-sheet bed during the melt season. Pulses of high CH4(aq) concentration coincide with supraglacially forced subglacial flushing events, confirming a subglacial source and highlighting the influence of melt on methane export. Sustained methane fluxes over the melt season are indicative of subglacial methane reserves that exceed methane export, with an estimated 6.3 tonnes (discharge-weighted mean; range from 2.4 to 11 tonnes) of CH4(aq) transported laterally from the ice-sheet bed. Stable-isotope analyses reveal a microbial origin for methane, probably from a mixture of inorganic and ancient organic carbon buried beneath the ice. We show that subglacial hydrology is crucial for controlling methane fluxes from the ice sheet, with efficient drainage limiting the extent of methane oxidation5 to about 17 per cent of methane exported. Atmospheric evasion is the main methane sink once runoff reaches the ice margin, with estimated diffusive fluxes (4.4 to 28 millimoles of CH4 per square metre per day) rivalling that of major world rivers6. Overall, our results indicate that ice sheets overlie extensive, biologically active methanogenic wetlands and that high rates of methane export to the atmosphere can occur via efficient subglacial drainage pathways. Our findings suggest that such environments have been previously underappreciated and should be considered in Earth's methane budget.
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Affiliation(s)
| | - Jemma L Wadham
- School of Geographical Sciences, University of Bristol, Bristol, UK
| | | | - Sandra Arndt
- Department of Geoscience, Environment and Society, Université Libre de Bruxelles, Brussels, Belgium
| | | | | | | | - Jon Telling
- School of Natural and Environmental Sciences, Newcastle University, Newcastle, UK
| | | | - Jon R Hawkings
- School of Geographical Sciences, University of Bristol, Bristol, UK.,National High Magnetic Field Lab and Earth, Ocean and Atmospheric Sciences, Florida State University, Tallahassee, FL, USA.,German Research Centre for Geosciences GFZ, Potsdam, Germany
| | - Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Jakub D Zarsky
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | | | - Alexandre M Anesio
- Department of Environmental Sciences, Aarhus University, Roskilde, Denmark
| | - Marek Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
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3
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First observation of direct methane emission to the atmosphere from the subglacial domain of the Greenland Ice Sheet. Sci Rep 2018; 8:16623. [PMID: 30413774 PMCID: PMC6226494 DOI: 10.1038/s41598-018-35054-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2018] [Accepted: 10/30/2018] [Indexed: 11/08/2022] Open
Abstract
During a 2016 field expedition to the West Greenland Ice Sheet, a striking observation of significantly elevated CH4 concentrations of up to 15 times the background atmospheric concentration were measured directly in the air expelled with meltwater at a subglacial discharge point from the Greenland Ice Sheet. The range of hourly subglacial CH4 flux rate through the discharge point was estimated to be 3.1 to 134 g CH4 hr-1. These measurements are the first observations of direct emissions of CH4 from the subglacial environment under the Greenlandic Ice Sheet to the atmosphere and indicate a novel emission pathway of CH4 that is currently a non-quantified component of the Arctic CH4 budget.
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4
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Achberger AM, Christner BC, Michaud AB, Priscu JC, Skidmore ML, Vick-Majors TJ. Microbial Community Structure of Subglacial Lake Whillans, West Antarctica. Front Microbiol 2016; 7:1457. [PMID: 27713727 PMCID: PMC5032586 DOI: 10.3389/fmicb.2016.01457] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2016] [Accepted: 08/31/2016] [Indexed: 11/13/2022] Open
Abstract
Subglacial Lake Whillans (SLW) is located beneath ∼800 m of ice on the Whillans Ice Stream in West Antarctica and was sampled in January of 2013, providing the first opportunity to directly examine water and sediments from an Antarctic subglacial lake. To minimize the introduction of surface contaminants to SLW during its exploration, an access borehole was created using a microbiologically clean hot water drill designed to reduce the number and viability of microorganisms in the drilling water. Analysis of 16S rRNA genes (rDNA) amplified from samples of the drilling and borehole water allowed an evaluation of the efficacy of this approach and enabled a confident assessment of the SLW ecosystem inhabitants. Based on an analysis of 16S rDNA and rRNA (i.e., reverse-transcribed rRNA molecules) data, the SLW community was found to be bacterially dominated and compositionally distinct from the assemblages identified in the drill system. The abundance of bacteria (e.g., Candidatus Nitrotoga, Sideroxydans, Thiobacillus, and Albidiferax) and archaea (Candidatus Nitrosoarchaeum) related to chemolithoautotrophs was consistent with the oxidation of reduced iron, sulfur, and nitrogen compounds having important roles as pathways for primary production in this permanently dark ecosystem. Further, the prevalence of Methylobacter in surficial lake sediments combined with the detection of methanogenic taxa in the deepest sediment horizons analyzed (34–36 cm) supported the hypothesis that methane cycling occurs beneath the West Antarctic Ice Sheet. Large ratios of rRNA to rDNA were observed for several operational taxonomic units abundant in the water column and sediments (e.g., Albidiferax, Methylobacter, Candidatus Nitrotoga, Sideroxydans, and Smithella), suggesting a potentially active role for these taxa in the SLW ecosystem. Our findings are consistent with chemosynthetic microorganisms serving as the ecological foundation in this dark subsurface environment, providing new organic matter that sustains a microbial ecosystem beneath the West Antarctic Ice Sheet.
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Affiliation(s)
- Amanda M Achberger
- Department of Biological Sciences, Louisiana State University, Baton Rouge LA, USA
| | - Brent C Christner
- Department of Biological Sciences, Louisiana State University, Baton RougeLA, USA; Department of Microbiology and Cell Science, University of Florida, GainesvilleFL, USA; Biodiversity Institute, University of Florida, GainesvilleFL, USA
| | - Alexander B Michaud
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - John C Priscu
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
| | - Mark L Skidmore
- Department of Earth Sciences, Montana State University, Bozeman MT, USA
| | - Trista J Vick-Majors
- Department of Land Resources and Environmental Science, Montana State University, Bozeman MT, USA
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5
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Dieser M, Broemsen ELJE, Cameron KA, King GM, Achberger A, Choquette K, Hagedorn B, Sletten R, Junge K, Christner BC. Molecular and biogeochemical evidence for methane cycling beneath the western margin of the Greenland Ice Sheet. THE ISME JOURNAL 2014; 8:2305-16. [PMID: 24739624 PMCID: PMC4992074 DOI: 10.1038/ismej.2014.59] [Citation(s) in RCA: 93] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Revised: 03/08/2014] [Accepted: 03/14/2014] [Indexed: 11/08/2022]
Abstract
Microbial processes that mineralize organic carbon and enhance solute production at the bed of polar ice sheets could be of a magnitude sufficient to affect global elemental cycles. To investigate the biogeochemistry of a polar subglacial microbial ecosystem, we analyzed water discharged during the summer of 2012 and 2013 from Russell Glacier, a land-terminating outlet glacier at the western margin of the Greenland Ice Sheet. The molecular data implied that the most abundant and active component of the subglacial microbial community at these marginal locations were bacteria within the order Methylococcales (59-100% of reverse transcribed (RT)-rRNA sequences). mRNA transcripts of the particulate methane monooxygenase (pmoA) from these taxa were also detected, confirming that methanotrophic bacteria were functional members of this subglacial ecosystem. Dissolved methane ranged between 2.7 and 83 μM in the subglacial waters analyzed, and the concentration was inversely correlated with dissolved oxygen while positively correlated with electrical conductivity. Subglacial microbial methane production was supported by δ(13)C-CH4 values between -64‰ and -62‰ together with the recovery of RT-rRNA sequences that classified within the Methanosarcinales and Methanomicrobiales. Under aerobic conditions, >98% of the methane in the subglacial water was consumed over ∼30 days incubation at ∼4 °C and rates of methane oxidation were estimated at 0.32 μM per day. Our results support the occurrence of active methane cycling beneath this region of the Greenland Ice Sheet, where microbial communities poised in oxygenated subglacial drainage channels could serve as significant methane sinks.
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Affiliation(s)
- Markus Dieser
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Erik L J E Broemsen
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Karen A Cameron
- Applied Physics Laboratory, Polar Science Center, University of Washington, Seattle, WA, USA
| | - Gary M King
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Amanda Achberger
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Kyla Choquette
- Applied Science Engineering and Technology Laboratory, Environment and Natural Resources Institute, University of Alaska Anchorage, Anchorage, AK, USA
| | - Birgit Hagedorn
- Applied Science Engineering and Technology Laboratory, Environment and Natural Resources Institute, University of Alaska Anchorage, Anchorage, AK, USA
| | - Ron Sletten
- Department of Earth and Space Sciences, University of Washington, Seattle, WA, USA
| | - Karen Junge
- Applied Physics Laboratory, Polar Science Center, University of Washington, Seattle, WA, USA
| | - Brent C Christner
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
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6
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Hawkings JR, Wadham JL, Tranter M, Raiswell R, Benning LG, Statham PJ, Tedstone A, Nienow P, Lee K, Telling J. Ice sheets as a significant source of highly reactive nanoparticulate iron to the oceans. Nat Commun 2014; 5:3929. [PMID: 24845560 PMCID: PMC4050262 DOI: 10.1038/ncomms4929] [Citation(s) in RCA: 64] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2013] [Accepted: 04/22/2014] [Indexed: 11/22/2022] Open
Abstract
The Greenland and Antarctic Ice Sheets cover ~\n10% of global land surface, but are rarely considered as active components of the global iron cycle. The ocean waters around both ice sheets harbour highly productive coastal ecosystems, many of which are iron limited. Measurements of iron concentrations in subglacial runoff from a large Greenland Ice Sheet catchment reveal the potential for globally significant export of labile iron fractions to the near-coastal euphotic zone. We estimate that the flux of bioavailable iron associated with glacial runoff is 0.40–2.54 Tg per year in Greenland and 0.06–0.17 Tg per year in Antarctica. Iron fluxes are dominated by a highly reactive and potentially bioavailable nanoparticulate suspended sediment fraction, similar to that identified in Antarctic icebergs. Estimates of labile iron fluxes in meltwater are comparable with aeolian dust fluxes to the oceans surrounding Greenland and Antarctica, and are similarly expected to increase in a warming climate with enhanced melting. Glacial meltwaters may help fertilize the iron-limited Polar Oceans, yet the contribution is poorly constrained. Hawkings et al. monitor iron fluxes during a full-melt season in Greenland, and propose that ice sheets provide highly reactive and potentially bioavailable iron, comparable with aeolian dust fluxes.
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Affiliation(s)
- Jon R Hawkings
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jemma L Wadham
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Martyn Tranter
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Rob Raiswell
- Cohen Biogeochemistry Laboratory, School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
| | - Liane G Benning
- Cohen Biogeochemistry Laboratory, School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
| | - Peter J Statham
- School of Ocean and Earth Science, National Oceanography Centre, University of Southampton, Southampton SO14 3ZH, UK
| | - Andrew Tedstone
- School of Geoscience, University of Edinburgh, Edinburgh EH8 9XP, UK
| | - Peter Nienow
- School of Geoscience, University of Edinburgh, Edinburgh EH8 9XP, UK
| | - Katherine Lee
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jon Telling
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
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