Helminth parasites found in faecal samples of phocids from the Antarctic Peninsula

Simultaneous analysis of the intestinal parasites and diet through eDNA metabarcoding

Agricultural expansion and intensification are having a huge impact on plant and arthropod diversity and abundance, affecting food availability for farmland birds. Difficult food access, in turn, can lead to immunosuppression and a higher incidence of parasites. In the studies designed to examine changes in the diet of birds and their parasites, metabarcoding is proving particularly useful. This technique requires mini-barcodes capable of amplifying the DNA of target organisms from faecal environmental DNA. To help to understand the impact of agricultural expansion on biodiversity, this study sought to design and identify mini-barcodes that might simultaneously assess diet and intestinal parasites from the faeces of farmland birds. The capacity to identify diet and parasites of two existing and three newly-developed mini-barcodes was tested "in silico" in relation to the behaviour of a reference eukaryotic barcode. Among the newly designed mini-barcodes, MiniB18S_81 showed the higher taxonomic coverage of eukaryotic taxa and a greater amplification and identification capacity for diet and parasite taxa. Moreover, when it was tested on faecal samples from five different steppe bird species, MiniB18S_81 showed high taxonomic resolution of the most relevant diet and parasite phyla, Arthropoda, Nematoda, Platyhelminthes and Apicomplexa, at the order level. Thus, the mini-barcode developed emerges as an excellent tool to simultaneously provide detailed information regarding the diet and parasites of birds, essential for conservation and management. This article is protected by copyright. All rights reserved.

Assessing the conservation values and tourism threats in Barrientos Island, Antarctic Peninsula

Antarctica has been witnessing continued growth of tourism, both in the overall visitation and in the diversity of itineraries and visitor activities. Expanding tourism presents unique business and educational opportunities, but it is also putting immense pressure on Antarctica's natural, and for the most parts, pristine environment. Understanding the effectiveness of different tourism management strategies and instruments, like the Visitor Site Guidelines adopted by the Antarctic Treaty, is fundamental to the sustainable management of Antarctic tourism. The purpose of this study was to assess the effectiveness of Visitor Site Guidelines and other tourism management actions in reducing impacts to the natural environment and for this, we used Barrientos Island as our case study as this is one of the most popular sites for tourism activities in the Antarctic Peninsula Region. First, we conducted a literature review and biological inventories to enable a thorough description of Barrientos Island's ecological values. The results show that Barrientos Island occupies the third highest biological richness among the top 15 most visited sites in the Antarctic Peninsula Region. We then assessed how tourism use on Barrientos Island affected biodiversity and the environment, and how Visitor Site Guidelines and other management measures helped alleviate these impacts. As intended, these instruments has been positive and valuable by providing operational guidance. However, they may lack significant information for tourism decision-making processes. To this end, we propose an alternative adaptive management approach that can more efficiently conserve biodiversity and environmental values while allowing the development of sustainable tourism activities in Antarctica.

Improving species distribution models of zoonotic marine parasites

Environmental niche modelling is an acclaimed method for estimating species' present or future distributions. However, in marine environments the assembly of representative data from reliable and unbiased occurrences is challenging. Here, we aimed to model the environmental niche and distribution of marine, parasitic nematodes from the Pseudoterranova decipiens complex using the software Maxent. The distribution of these potentially zoonotic species is of interest, because they infect the muscle tissue of host species targeted by fisheries. To achieve the best possible model, we used two different approaches. The land distance (LD) model was based on abiotic data, whereas the definitive host distance (DHD) model included species-specific biotic data. To assess whether DHD is a suitable descriptor for Pseudoterranova spp., the niches of the parasites and their respective definitive hosts were analysed using ecospat. The performance of LD and DHD was compared based on the variables' contribution to the model. The DHD-model clearly outperformed the LD-model. While the LD-model gave an estimate of the parasites' niches, it only showed the potential distribution. The DHD-model produced an estimate of the species' realised distribution and indicated that biotic variables can help to improve the modelling of data-poor, marine species.

Gastrointestinal parasite infestation in the alpine mountain hare (Lepus timidus varronis): Are abiotic environmental factors such as elevation, temperature and precipitation affecting prevalence of parasite species?

Information concerning factors regulating Alpine mountain hare (Lepus timidus varronis) populations such as host-parasite interactions is missing as only a few parasitological surveys exist of this subspecies. Parasites are not only dependent on their host but also on suitable environmental conditions for infestation. Abiotic environmental factors have an important regulating role on parasites in mammals. It is estimated that the elevation range of parasites is likely to shift in response to alternate host movement and changes in climate. Here we assess the parasitic infestation in the Alpine mountain hare by analysing the parasites in faeces and comparing the parasite infestation at different elevation ranges and at varied weather conditions for two years in the Austrian Alps. Almost half of the faecal samples were free of parasites (46.2%, n = 52). Most frequent was the infection by Coccidia (46.2%), whereas stomach intestine strongylids, Trichuris spp, and Cestoda were only found in 9.6% of all faeces. Hence, only Coccidia may be prevalent enough to regulate Alpine mountain hare populations in the Austrian Alps. Elevation had a significant positive effect on the infection of animals by Trichuris spp, whereas temperature had a significant negative effect on the infection by any parasite traceable in faeces and, when looking at the parasite groups individually, on Coccidia.

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Almost half of the Alpine mountain hare faecal samples were free of parasites.

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Coccidia was more frequent in our hare faeces than in other examined populations.

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Stomach intestine strongylids and Cestoda were only found in 9.6% of our samples.

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Only Coccidia may be prevalent enough to regulate this hare population.

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Temperature had a significant negative effect on the incidence of any parasite in the faecal samples.

Impact of human-associated Escherichia coli clonal groups in Antarctic pinnipeds: presence of ST73, ST95, ST141 and ST131

There is growing concern about the spreading of human microorganisms in relatively untouched ecosystems such as the Antarctic region. For this reason, three pinniped species (Leptonychotes weddellii, Mirounga leonina and Arctocephalus gazella) from the west coast of the Antartic Peninsula were analysed for the presence of Escherichia spp. with the recovery of 158 E. coli and three E. albertii isolates. From those, 23 harboured different eae variants (α1, β1, β2, ε1, θ1, κ, ο), including a bfpA-positive isolate (O49:H10-A-ST206, eae-k) classified as typical enteropathogenic E. coli. Noteworthy, 62 of the 158 E. coli isolates (39.2%) exhibited the ExPEC status and 27 (17.1%) belonged to sequence types (ST) frequently occurring among urinary/bacteremia ExPEC clones: ST12, ST73, ST95, ST131 and ST141. We found similarities >85% within the PFGE-macrorrestriction profiles of pinniped and human clinic O2:H6-B2-ST141 and O16:H5/O25b:H4-B2-ST131 isolates. The in silico analysis of ST131 Cplx genomes from the three pinnipeds (five O25:H4-ST131/PST43-fimH22-virotype D; one O16:H5-ST131/PST506-fimH41; one O25:H4-ST6252/PST9-fimH22-virotype D1) identified IncF and IncI1 plasmids and revealed high core-genome similarities between pinniped and human isolates (H22 and H41 subclones). This is the first study to demonstrate the worrisome presence of human-associated E. coli clonal groups, including ST131, in Antarctic pinnipeds.