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Cuena Lombraña A, Dessì L, Podda L, Fois M, Luna B, Porceddu M, Bacchetta G. The Effect of Heat Shock on Seed Dormancy Release and Germination in Two Rare and Endangered Astragalus L. Species (Fabaceae). PLANTS (BASEL, SWITZERLAND) 2024; 13:484. [PMID: 38498413 PMCID: PMC10892968 DOI: 10.3390/plants13040484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 02/02/2024] [Accepted: 02/06/2024] [Indexed: 03/20/2024]
Abstract
Many Astragalus species exhibit seeds with physical dormancy (PY), but little is known about the ecological context of this dormancy. We focused on A. maritimus and A. verrucosus, two threatened Sardinian endemic species inside the subgenus Trimeniaeus Bunge. Fresh seeds collected from the only two respective known populations were used to investigate the effect of mechanical scarification, heat shock, and water imbibition processes on PY release and germination. PY can be overcome through mechanical scarification of the water-impermeable seed coats, while no dormancy break was detected, nor a subsequent increase in seed germination due to fire-induced heat. This suggests that fire does not trigger dormancy release and seed germination in these species. The seeds tolerate relatively high heat shock temperatures (up to 120 and 100 °C for A. verrucosus and A. maritimus, respectively), but after 120 °C for 10 min, the number of dead seeds increases in both species. These facts suggest the capacity to develop a soil seed bank that can persist after fires and delay germination until the occurrence of optimal conditions. As regards water imbibition, both Astragalus species did not show the typical triphasic pattern, as germination started without further water uptake. This study emphasizes the significance of understanding germination processes and dormancy in threatened species. In fire-prone ecosystems, PY dormancy plays a crucial role in soil seed bank persistence, and it may be selectively influenced by post-fire conditions. Understanding such adaptations provides useful insights into conservation strategies.
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Affiliation(s)
- Alba Cuena Lombraña
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
| | - Ludovica Dessì
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
| | - Lina Podda
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
| | - Mauro Fois
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
| | - Belén Luna
- Departamento de Ciencias Ambientales, Facultad de Ciencias Ambientales y Bioquímica, Universidad de Castilla-La Mancha, Av. Carlos III S/N, 45071 Toledo, Spain;
| | - Marco Porceddu
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
| | - Gianluigi Bacchetta
- Centre for Conservation of Biodiversity (CCB), Sardinian Germplasm Bank (BG-SAR), Department of Life and Environmental Sciences, University of Cagliari, Viale Sant’Ignazio da Laconi 9-13, 09123 Cagliari, Italy; (A.C.L.); (L.P.); (M.F.); (M.P.); (G.B.)
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Di Nicola MR, Pozzi AV, Mezzadri S, Faraone FP, Russo G, Dorne JLMC, Minuti G. The Endangered Sardinian Grass Snake: Distribution Update, Bioclimatic Niche Modelling, Dorsal Pattern Characterisation, and Literature Review. Life (Basel) 2023; 13:1867. [PMID: 37763271 PMCID: PMC10533143 DOI: 10.3390/life13091867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 08/17/2023] [Accepted: 08/30/2023] [Indexed: 09/29/2023] Open
Abstract
The Sardinian grass snake, Natrix helvetica cetti, is an endangered endemic snake subspecies with a restricted and highly fragmented geographic distribution. Information on its ecology and detailed geographic distribution are scarce and may negatively impact on its conservation status. Therefore, a literature review on its taxonomy, morphology, ecology, and conservation is presented here. Moreover, field records from the authors, citizen science and the existing literature provide an updated geographic distribution highlighting its presence within 13 new and 7 historic 10 × 10 km cells. Bioclimatic niche modelling was then applied to explore patterns of habitat suitability and phenotypic variation within N. h. cetti. The geographic distribution of the species was found to be positively correlated with altitude and precipitation values, whereas temperature showed a negative correlation. Taken together, these outcomes may explain the snake's presence, particularly in eastern Sardinia. In addition, analysis of distribution overlap with the competing viperine snake (N. maura) and the urodeles as possible overlooked trophic resources (Speleomantes spp. and Euproctus platycephalus) showed overlaps of 66% and 79%, respectively. Finally, geographical or bioclimatic correlations did not explain phenotypic variation patterns observed in this highly polymorphic taxon. Perspectives on future research to investigate N. h. cetti's decline and support effective conservation measures are discussed.
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Affiliation(s)
- Matteo Riccardo Di Nicola
- Faculty of Veterinary Medicine, Department of Pathobiology, Pharmacology and Zoological Medicine, Wildlife Health Ghent, Ghent University, 9820 Merelbeke, Belgium
- Unit of Dermatology and Cosmetology, IRCCS San Raffaele Hospital, Via Olgettina 60, 20132 Milan, Italy
- Asociación Herpetológica Española, Apartado de Correos 191, 28911 Leganés, Spain
| | - Andrea Vittorio Pozzi
- Molecular Ecology and Evolution Group, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK;
| | - Sergio Mezzadri
- Independent Researcher, Via Palmerio, 29121 Piacenza, Italy;
| | - Francesco Paolo Faraone
- Dipartimento Scienze e Tecnologie Biologiche, Chimiche e Farmaceutiche, University of Palermo, Via Archirafi 18, 90123 Palermo, Italy;
| | - Giorgio Russo
- VIB-VUB Center for Structural Biology, Vrije Universiteit Brussel, 1090 Brussels, Belgium;
| | - Jean Lou M. C. Dorne
- Methodology and Scientific Support Unit, European Food Safety Authority (EFSA), Via Carlo Magno 1A, 43126 Parma, Italy;
| | - Gianmarco Minuti
- Ecology & Biodiversity Research Unit, Department of Biology, Vrije Universiteit Brussels, 1090 Brussels, Belgium;
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Palli J, Mensing SA, Schoolman EM, Solano F, Piovesan G. Historical ecology identifies long-term rewilding strategy for conserving Mediterranean mountain forests in south Italy. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2023; 33:e2758. [PMID: 36193873 DOI: 10.1002/eap.2758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 06/28/2022] [Accepted: 07/18/2022] [Indexed: 06/16/2023]
Abstract
In the context of global decline in old-growth forest, historical ecology is a valuable tool to derive insights into vegetation legacies and dynamics and develop new conservation and restoration strategies. In this cross-disciplinary study, we integrate palynology (Lago del Pesce record), history, dendrochronology, and historical and contemporary land cover maps to assess drivers of vegetation change over the last millennium in a Mediterranean mountain forest (Pollino National Park, southern Italy) and discuss implications in conservation ecology. The study site hosts a remnant beech-fir (Fagus sylvatica-Abies alba) mixed forest, a priority habitat for biodiversity conservation in Europe. In the 10th century, the pollen record showed an open environment that was quickly colonized by silver fir when sociopolitical instabilities reduced anthropogenic pressures in mountain forests. The highest forest cover and biomass was reached between the 14th and the 17th centuries following land abandonment due to recurring plague pandemics. This rewilding process is also reflected in the recruitment history of Bosnian pine (Pinus heldreichii) in the subalpine elevation belt. Our results show that human impacts have been one of the main drivers of silver fir population contraction in the last centuries in the Mediterranean, and that the removal of direct human pressure led to ecosystem renovation. Since 1910, the Rubbio State Forest has locally protected and restored the mixed beech-fir forest. The institutions in 1972 for the Rubbio Natural Reserve and in 1993 for Pollino National Park have guaranteed the survival of the silver fir population, demonstrating the effectiveness of targeted conservation and restoration policies despite a warming climate. Monitoring silver fir populations can measure the effectiveness of conservation measures. In the last decades, the abandonment of rural environments (rewilding) along the mountains of southern Italy has reduced the pressure on ecosystems, thus boosting forest expansion. However, after four decades of natural regeneration and increasing biomass, pollen influx and forest composition are still far from the natural attributes of the medieval forest ecosystem. We conclude that long-term forest planning encouraging limited direct human disturbance will lead toward rewilding and renovation of carbon-rich and highly biodiverse Mediterranean old-growth forests, which will be more resistant and resilient to future climate change.
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Affiliation(s)
- Jordan Palli
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy
- Department of Agriculture and Forest Sciences (DAFNE), University of Tuscia, Viterbo, Italy
| | - Scott A Mensing
- Department of Geography, University of Nevada, Reno, Nevada, USA
| | | | - Francesco Solano
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy
- Department of Agriculture and Forest Sciences (DAFNE), University of Tuscia, Viterbo, Italy
| | - Gianluca Piovesan
- Department of Ecological and Biological Sciences (DEB), University of Tuscia, Viterbo, Italy
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Artificial Intelligence Applied to Improve Scientific Reviews: The Antibacterial Activity of Cistus Plants as Proof of Concept. Antibiotics (Basel) 2023; 12:antibiotics12020327. [PMID: 36830239 PMCID: PMC9952093 DOI: 10.3390/antibiotics12020327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2023] [Revised: 01/29/2023] [Accepted: 02/02/2023] [Indexed: 02/08/2023] Open
Abstract
Reviews have traditionally been based on extensive searches of the available bibliography on the topic of interest. However, this approach is frequently influenced by the authors' background, leading to possible selection bias. Artificial intelligence applied to natural language processing (NLP) is a powerful tool that can be used for systematic reviews by speeding up the process and providing more objective results, but its use in scientific literature reviews is still scarce. This manuscript addresses this challenge by developing a reproducible tool that can be used to develop objective reviews on almost every topic. This tool has been used to review the antibacterial activity of Cistus genus plant extracts as proof of concept, providing a comprehensive and objective state of the art on this topic based on the analysis of 1601 research manuscripts and 136 patents. Data were processed using a publicly available Jupyter Notebook in Google Collaboratory here. NLP, when applied to the study of antibacterial activity of Cistus plants, is able to recover the main scientific manuscripts and patents related to the topic, avoiding any biases. The NLP-assisted literature review reveals that C. creticus and C. monspeliensis are the first and second most studied Cistus species respectively. Leaves and fruits are the most commonly used plant parts and methanol, followed by butanol and water, the most widely used solvents to prepare plant extracts. Furthermore, Staphylococcus. aureus followed by Bacillus. cereus are the most studied bacterial species, which are also the most susceptible bacteria in all studied assays. This new tool aims to change the actual paradigm of the review of scientific literature to make the process more efficient, reliable, and reproducible, according to Open Science standards.
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Zander PD, Wienhues G, Grosjean M. Scanning Hyperspectral Imaging for In Situ Biogeochemical Analysis of Lake Sediment Cores: Review of Recent Developments. J Imaging 2022; 8:jimaging8030058. [PMID: 35324613 PMCID: PMC8955577 DOI: 10.3390/jimaging8030058] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 02/17/2022] [Accepted: 02/23/2022] [Indexed: 11/16/2022] Open
Abstract
Hyperspectral imaging (HSI) in situ core scanning has emerged as a valuable and novel tool for rapid and non-destructive biogeochemical analysis of lake sediment cores. Variations in sediment composition can be assessed directly from fresh sediment surfaces at ultra-high-resolution (40−300 μm measurement resolution) based on spectral profiles of light reflected from sediments in visible, near infrared, and short-wave infrared wavelengths (400−2500 nm). Here, we review recent methodological developments in this new and growing field of research, as well as applications of this technique for paleoclimate and paleoenvironmental studies. Hyperspectral imaging of sediment cores has been demonstrated to effectively track variations in sedimentary pigments, organic matter, grain size, minerogenic components, and other sedimentary features. These biogeochemical variables record information about past climatic conditions, paleoproductivity, past hypolimnetic anoxia, aeolian input, volcanic eruptions, earthquake and flood frequencies, and other variables of environmental relevance. HSI has been applied to study seasonal and inter-annual environmental variability as recorded in individual varves (annually laminated sediments) or to study sedimentary records covering long glacial−interglacial time-scales (>10,000 years).
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