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Zhou Y, Fang Y, Jin X, Cui W, Lan Q, Xie T, Zhu B. Haplotype diversity and phylogenetic relationship analysis of Chinese Yulin Han population using 59 Y-STR loci of two novel Y-STR typing systems. Leg Med (Tokyo) 2021; 50:101871. [PMID: 33756375 DOI: 10.1016/j.legalmed.2021.101871] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 02/07/2021] [Accepted: 03/06/2021] [Indexed: 11/16/2022]
Abstract
To investigate the genetic polymorphisms of 59 Y-chromosomal short tandem repeat (Y-STR) loci in the Yulin Han population, 229 unrelated healthy male individuals were analyzed using AGCU Y37 kit and AGCU Y-SUPP Plus kit. A total of 227 different haplotypes were obtained at the 59 Y-STR loci. Among them, 225 haplotypes were unique and 2 haplotypes occurred twice. The overall haplotypic diversity and discrimination capacity were 0.9999 and 0.9913, respectively. The phylogenetic relationships between the studied Yulin Han population and 17 previously reported reference populations were evaluated via multidimensional scaling and Neighbor-Joining analyses based on the haplotypic frequencies of 'YHRD Maximal Loci'. Phylogenetic analysis revealed that Yulin Han population was closely related to Chinese Han and Hunan Yao populations. These results demonstrated that the 59 Y-STR loci were useful for forensic applications and population genetic studies.
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Affiliation(s)
- Yongsong Zhou
- Multi-Omics Innovative Research Center of Forensic Identification; Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
| | - Yating Fang
- Multi-Omics Innovative Research Center of Forensic Identification; Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
| | - Xiaoye Jin
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China; Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
| | - Wei Cui
- Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China; Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
| | - Qiong Lan
- Multi-Omics Innovative Research Center of Forensic Identification; Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
| | - Tong Xie
- Multi-Omics Innovative Research Center of Forensic Identification; Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China
| | - Bofeng Zhu
- Multi-Omics Innovative Research Center of Forensic Identification; Department of Forensic Genetics, School of Forensic Medicine, Southern Medical University, Guangzhou 510515, People's Republic of China; Key Laboratory of Shaanxi Province for Craniofacial Precision Medicine Research, College of Stomatology, Xi'an Jiaotong University, Xi'an 710049, People's Republic of China; Clinical Research Center of Shaanxi Province for Dental and Maxillofacial Diseases, College of Stomatology, Xi'an Jiaotong University, Xi'an 710004, People's Republic of China
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Liu C, Han X, Min Y, Liu H, Xu Q, Yang X, Huang S, Chen Z, Liu C. Genetic polymorphism analysis of 40 Y-chromosomal STR loci in seven populations from South China. Forensic Sci Int 2018; 291:109-114. [DOI: 10.1016/j.forsciint.2018.08.003] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2018] [Revised: 06/15/2018] [Accepted: 08/03/2018] [Indexed: 11/16/2022]
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Liu C, Yang X, Chen L, Liu H, Liu C. Haplotype analysis of the polymorphic 24 Y-STR markers in six ethnic populations from China. AUST J FORENSIC SCI 2018. [DOI: 10.1080/00450618.2017.1281347] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Changhui Liu
- Department of Forensic Medicine, School of Basic Medical Sciences, Southern Medical University , Guangzhou, People’s Republic of China
- Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou Forensic Science Institute , Guangzhou, People’s Republic of China
| | - Xingyi Yang
- Department of Forensic Medicine, School of Basic Medical Sciences, Southern Medical University , Guangzhou, People’s Republic of China
- Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou Forensic Science Institute , Guangzhou, People’s Republic of China
| | - Ling Chen
- Department of Forensic Medicine, School of Basic Medical Sciences, Southern Medical University , Guangzhou, People’s Republic of China
| | - Hong Liu
- Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou Forensic Science Institute , Guangzhou, People’s Republic of China
| | - Chao Liu
- Department of Forensic Medicine, School of Basic Medical Sciences, Southern Medical University , Guangzhou, People’s Republic of China
- Guangdong Province Key Laboratory of Forensic Genetics, Guangzhou Forensic Science Institute , Guangzhou, People’s Republic of China
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Technical note: developmental validation of a novel 6-dye typing system with 36 Y-STR loci. Int J Legal Med 2018; 133:1015-1027. [DOI: 10.1007/s00414-018-1864-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2018] [Accepted: 05/14/2018] [Indexed: 10/16/2022]
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Du W, Wu W, Wu Z, Guo L, Wang B, Chen L. Genetic polymorphisms of 32 Y-STR loci in Meizhou Hakka population. Int J Legal Med 2018; 133:465-466. [PMID: 29737420 DOI: 10.1007/s00414-018-1845-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2018] [Accepted: 04/05/2018] [Indexed: 11/25/2022]
Abstract
Using AGCU Y24 Plus PCR Amplification Kit, 32 Y short tandem repeat (STR) loci were analyzed in 355 unrelated male participants of Meizhou city in Guangdong Province of China. By analyzing 341 different haplotypes, it was found that haplotype diversity (HD) and discrimination capacity (DC) were 0.9995 and 0.9605, respectively. Population relationships were analyzed by comparing Hakka population with ten other populations. The results indicate that Meizhou Hakka population was closely related to Guangdong Han population. These data were valuable for both forensic applications and population genetics.
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Affiliation(s)
- Weian Du
- School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China
- Guangdong Homy Genetics Incorporation, Foshan, 512000, China
| | - Weibin Wu
- School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China
| | - Zihao Wu
- School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China
| | - Longjun Guo
- Forensic Science Centre, Meizhou Public Security Bureau, Meizhou, 514021, China
| | - Bangchao Wang
- Guangdong Homy Genetics Incorporation, Foshan, 512000, China
| | - Ling Chen
- School of Forensic Medicine, Southern Medical University, Guangzhou, 510515, China.
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Wang H, Ba H, Yang C, Zhang J, Tai Y. Inner and inter population structure construction of Chinese Jiangsu Han population based on Y23 STR system. PLoS One 2017; 12:e0180921. [PMID: 28704439 PMCID: PMC5509181 DOI: 10.1371/journal.pone.0180921] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 06/25/2017] [Indexed: 01/22/2023] Open
Abstract
In this study, we analyzed the genetic polymorphisms of 23 Y-STR loci from PowerPlex® Y23 system in 916 unrelated healthy male individuals from Chinese Jiangsu Han, and observed 912 different haplotypes including 908 unique haplotypes and 4 duplicate haplotypes. The haplotype diversity reached 0.99999 and the discrimination capacity and match probability were 0.9956 and 0.0011, respectively. The gene diversity values ranged from 0.3942 at DYS438 to 0.9607 at DYS385a/b. Population differentiation within 10 Jiangsu Han subpopulations were evaluated by RST values and visualized in Neighbor-Joining trees and Multi-Dimensional Scaling plots as well as population relationships between the Jiangsu Han population and other 18 Eastern Asian populations. Such results indicated that the 23 Y-STR loci were highly polymorphic in Jiangsu Han population and played crucial roles in forensic application as well as population genetics. For the first time, we reported the genetic diversity of male lineages in Jiangsu Han population at a high-resolution level of 23 Y-STR set and consequently contributed to familial searching, offender tracking, and anthropology analysis of Jiangsu Han population.
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Affiliation(s)
- Huipin Wang
- Zhongshan City People's Hospital, Zhongshan, Guangdong, P. R., China
| | - Huajie Ba
- DNA Laboratory, Public Security Bureau of Changzhou, Changzhou, Jiangsu, P. R., China
| | - Chun Yang
- Department of Psychiatry, Psychiatry Center of Chinese People’s Liberation Army, No. 102 Hospital of People’s Liberation Army, Changzhou, Jiangsu, P. R., China
| | - Jianqiu Zhang
- DNA Laboratory, Public Security Bureau of Yangzhou, Yangzhou, Jiangsu, P. R., China
| | - Yunchun Tai
- School of Forensic Medicine, Southern Medical University, Guangzhou, Guangdong, P. R., China
- * E-mail:
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Du W, Chen L, Liu H, Qiu P, Li F, Gao J, Zhou Y, Wang B, Liu C. Developmental validation of the HomyGene19+14Y System. Int J Legal Med 2016; 131:605-620. [DOI: 10.1007/s00414-016-1505-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2016] [Accepted: 11/22/2016] [Indexed: 11/30/2022]
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