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Epain M, Valette S, Zou K, Faisan S, Heitz F, Croisille P, Fracasso T, Fanton L. Sex estimation from coxal bones using deep learning in a population balanced by sex and age. Int J Legal Med 2024:10.1007/s00414-024-03268-2. [PMID: 38862820 DOI: 10.1007/s00414-024-03268-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2023] [Accepted: 06/03/2024] [Indexed: 06/13/2024]
Abstract
In the field of forensic anthropology, researchers aim to identify anonymous human remains and determine the cause and circumstances of death from skeletonized human remains. Sex determination is a fundamental step of this procedure because it influences the estimation of other traits, such as age and stature. Pelvic bones are especially dimorphic, and are thus the most useful bones for sex identification. Sex estimation methods are usually based on morphologic traits, measurements, or landmarks on the bones. However, these methods are time-consuming and can be subject to inter- or intra-observer bias. Sex determination can be done using dry bones or CT scans. Recently, artificial neural networks (ANN) have attracted attention in forensic anthropology. Here we tested a fully automated and data-driven machine learning method for sex estimation using CT-scan reconstructions of coxal bones. We studied 580 CT scans of living individuals. Sex was predicted by two networks trained on an independent sample: a disentangled variational auto-encoder (DVAE) alone, and the same DVAE associated with another classifier (Crecon). The DVAE alone exhibited an accuracy of 97.9%, and the DVAE + Crecon showed an accuracy of 99.8%. Sensibility and precision were also high for both sexes. These results are better than those reported from previous studies. These data-driven algorithms are easy to implement, since the pre-processing step is also entirely automatic. Fully automated methods save time, as it only takes a few minutes to pre-process the images and predict sex, and does not require strong experience in forensic anthropology.
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Affiliation(s)
- Marie Epain
- Service of Legal Medicine, Hospices Civils de Lyon, Edouard Herriot Hospital, Lyon, France.
- University Lyon, Claude-Bernard Lyon 1 University, Lyon-Est Medical School, Lyon, France.
| | | | - Kaifeng Zou
- Laboratoire des Sciences de l'Ingénieur, de l'Informatique et de l'Imagerie, ICube (UMR 7357), UNISTRA, CNRS, Illkirch, France
| | - Sylvain Faisan
- Laboratoire des Sciences de l'Ingénieur, de l'Informatique et de l'Imagerie, ICube (UMR 7357), UNISTRA, CNRS, Illkirch, France
| | - Fabrice Heitz
- Laboratoire des Sciences de l'Ingénieur, de l'Informatique et de l'Imagerie, ICube (UMR 7357), UNISTRA, CNRS, Illkirch, France
| | - Pierre Croisille
- CREATIS-LRMN, INSERM U630, INSA Lyon, Villeurbanne, France
- Radiology Department, University Hospital of Saint-Étienne, Saint-Étienne, France
| | - Tony Fracasso
- Centre universitaire romand de médecine légale, Lausanne - Genève, Département de médecine communautaire, Université de Genève, Geneva, Switzerland
| | - Laurent Fanton
- Service of Legal Medicine, Hospices Civils de Lyon, Edouard Herriot Hospital, Lyon, France
- University Lyon, Claude-Bernard Lyon 1 University, Lyon-Est Medical School, Lyon, France
- CREATIS-LRMN, INSERM U630, INSA Lyon, Villeurbanne, France
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Nogueira L, Santos F, Castier F, Knecht S, Bernardi C, Alunni V. Sex assessment using the radius bone in a French sample when applying various statistical models. Int J Legal Med 2023; 137:925-934. [PMID: 36826526 DOI: 10.1007/s00414-023-02981-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Accepted: 02/15/2023] [Indexed: 02/25/2023]
Abstract
Sex estimation of skeletal remains is one of the most important tasks in forensic anthropology. The radius bone is useful to develop standard guidelines for sex estimation across various populations and is an alternative when coxal or femoral bones are not available.The aim of the present study was to assess the sexual dimorphism from radius measurements in a French sample and compare the predictive accuracy of several modelling techniques, using both classical statistical methods and machine learning algorithms.A total of 78 left radii (36 males and 42 females) were used in this study. Sixteen measurements were made. The modelling techniques included a linear discriminant analysis (LDA), flexible discriminant analysis (FDA), regularised discriminant analysis (RDA), penalised logistic regression (PLR), random forests (RF) and support vector machines (SVM).The different statistical models showed an accuracy of classification that is greater than 94%. After selection of variables, the accuracies increased to 97%. The measurements made at the proximal part of the radius (sagittal and transversal diameters of the head, and sagittal diameter of the neck), at distal part (maximum width of the distal epiphysis) and of the entire bone (maximum length) stand out among the various models.The present study suggests that the radius bone constitutes a valid alternative for sex estimation of skeletal remains with comparable classification accuracies to the pelvis or femur and that the non-classical statistical models may provide a novel approach to sex estimation from the radius bone. However, the extrapolation of the current results cannot be made without caution because our sample was composed of very aged individuals.
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Affiliation(s)
- Luisa Nogueira
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, 06107, Nice cedex 2, France.
| | - Fréderic Santos
- UMR 5199 PACEA, CNRS-MCC, Bâtiment B8A, Allée Geoffroy Saint-Hilaire, Université de Bordeaux, CS 50023, 33615, Pessac Cedex, France
| | - François Castier
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, 06107, Nice cedex 2, France
| | - Siam Knecht
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, 06107, Nice cedex 2, France
| | - Caroline Bernardi
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, 06107, Nice cedex 2, France.,CEPAM (UMR CNRS 7264), 24 Avenue Des Diables Bleus, 06300, Nice, France
| | - Véronique Alunni
- Faculté de Médecine, Institut Universitaire d'Anthropologie Médico-Légale, Université Côte d'Azur, 28 Avenue de Valombrose, 06107, Nice cedex 2, France.,CEPAM (UMR CNRS 7264), 24 Avenue Des Diables Bleus, 06300, Nice, France
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Bidmos MA, Olateju OI, Latiff S, Rahman T, Chowdhury MEH. Machine learning and discriminant function analysis in the formulation of generic models for sex prediction using patella measurements. Int J Legal Med 2023; 137:471-485. [PMID: 36205796 PMCID: PMC9902304 DOI: 10.1007/s00414-022-02899-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2022] [Accepted: 09/22/2022] [Indexed: 02/07/2023]
Abstract
Sex prediction from bone measurements that display sexual dimorphism is one of the most important aspects of forensic anthropology. Some bones like the skull and pelvis display distinct morphological traits that are based on shape. These morphological traits which are sexually dimorphic across different population groups have been shown to provide an acceptably high degree of accuracy in the prediction of sex. A sample of 100 patella of Mixed Ancestry South Africans (MASA) was collected from the Dart collection. Six parameters: maximum height (maxh), maximum breadth (maxw), maximum thickness (maxt), the height of articular facet (haf), lateral articular facet breadth (lafb), and medial articular facet breath (mafb) were used in this study. Stepwise and direct discriminant function analyses were performed for measurements that exhibited significant differences between male and female mean measurements, and the "leave-one-out" approach was used for validation. Moreover, we have used eight classical machine learning techniques along with feature ranking techniques to identify the best feature combinations for sex prediction. A stacking machine learning technique was trained and validated to classify the sex of the subject. Here, we have used the top performing three ML classifiers as base learners and the predictions of these models were used as inputs to different machine learning classifiers as meta learners to make the final decision. The measurements of the patella of South Africans are sexually dimorphic and this observation is consistent with previous studies on the patella of different countries. The range of average accuracies obtained for pooled multivariate discriminant function equations is 81.9-84.2%, while the stacking ML technique provides 90.8% accuracy which compares well with those presented for previous studies in other parts of the world. In conclusion, the models proposed in this study from measurements of the patella of different population groups in South Africa are useful resent with reasonably high average accuracies.
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Affiliation(s)
- Mubarak A. Bidmos
- College of Medicine, QU Health, Department of Basic Medical Sciences, Qatar University, Doha, Qatar
| | - Oladiran I. Olateju
- School of Anatomical Sciences, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Sabiha Latiff
- School of Anatomical Sciences, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa
| | - Tawsifur Rahman
- Department of Electrical Engineering, College of Engineering, Qatar University, Doha, Qatar
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H Attia M, H Attia M, Tarek Farghaly Y, Ahmed El-Sayed Abulnoor B, Curate F. Performance of the supervised learning algorithms in sex estimation of the proximal femur: A comparative study in contemporary Egyptian and Turkish samples. Sci Justice 2022; 62:288-309. [PMID: 35598923 DOI: 10.1016/j.scijus.2022.03.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/26/2021] [Revised: 12/27/2021] [Accepted: 03/06/2022] [Indexed: 10/18/2022]
Abstract
Sex estimation standards are population specific however, we argue that machine learning techniques (ML) may enhance the biological sex determination on trans-population application. Linear discriminant analysis (LDA) versus nine ML including quadratic discriminant analysis (QDA), support vector machine (SVM), Decision Tree (DT), Gaussian process (GPC), Naïve Bayesian (NBC), K-Nearest Neighbor (KNN), Random Forest (RFM) and Adaptive boosting (Adaboost) were compared. The experiments involve two contemporary populations: Turkish (n = 300) and Egyptian populations (n = 100) for training and validation, respectively. Base models were calibrated using isotonic and sigmoid calibration schemes. Results were analyzed at posterior probabilities (pp) thresholds >0.95 and >0.80. At pp = 0.5, ML algorithms yielded comparable accuracies in the training (90% to 97%) and test sets (81% to 88%) which are not modified after employing the calibration techniques. At pp >0.95, the raw RFM, LDA, QDA, and SVM models have shown the best performance however, calibration techniques improved the performance of various classifier especially NBC and Adaboost. By contrast, the performance of GPC, KNN, QDA models worsened by calibration. RFM has shown the best performance among all models at both thresholds whereas LDA benefited the best from using both calibration methods at pp >0.80. Complex ML models are not necessarily achieving better performance metrics. LDA and QDA remain the fastest and simplest classifiers. We demonstrated the capability of enhancing sex estimation using ML on an independent population sample however, differences in the underlying probability distribution generated by models were detected which warranted more cautious application by forensic practitioners.
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Affiliation(s)
- MennattAllah H Attia
- Forensic Medicine and Clinical Toxicology, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
| | - Mohamed H Attia
- Biomedical Engineering, Medical Research Institute, Alexandria University, Egypt; Institute for Intelligent Systems Research and Innovation, Deakin University, Australia.
| | | | | | - Francisco Curate
- University of Coimbra, Research Centre for Anthropology and Health, Department of Life Sciences, Coimbra, Portugal; University of Coimbra, Laboratory of Forensic Anthropology, Department of Life Sciences, Coimbra, Portugal.
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