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Won SY, Soundararajan P, Irulappan V, Kim JS. In-silico, evolutionary, and functional analysis of CHUP1 and its related proteins in Bienertia sinuspersici-a comparative study across C 3, C 4, CAM, and SCC 4 model plants. PeerJ 2023; 11:e15696. [PMID: 37456874 PMCID: PMC10348308 DOI: 10.7717/peerj.15696] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2022] [Accepted: 06/14/2023] [Indexed: 07/18/2023] Open
Abstract
Single-cell C4 (SCC4) plants with bienertioid anatomy carry out photosynthesis in a single cell. Chloroplast movement is the underlying phenomenon, where chloroplast unusual positioning 1 (CHUP1) plays a key role. This study aimed to characterize CHUP1 and CHUP1-like proteins in an SCC4 photosynthetic plant, Bienertia sinuspersici. Also, a comparative analysis of SCC4 CHUP1 was made with C3, C4, and CAM model plants including an extant basal angiosperm, Amborella. The CHUP1 gene exists as a single copy from the basal angiosperms to SCC4 plants. Our analysis identified that Chenopodium quinoa, a recently duplicated allotetraploid, has two copies of CHUP1. In addition, the numbers of CHUP1-like and its associated proteins such as CHUP1-like_a, CHUP1-like_b, HPR, TPR, and ABP varied between the species. Hidden Markov Model analysis showed that the gene size of CHUP1-like_a and CHUP1-like_b of SCC4 species, Bienertia, and Suaeda were enlarged than other plants. Also, we identified that CHUP1-like_a and CHUP1-like_b are absent in Arabidopsis and Amborella, respectively. Motif analysis identified several conserved and variable motifs based on the orders (monocot and dicot) as well as photosynthetic pathways. For instance, CAM plants such as pineapple and cactus shared certain motifs of CHUP1-like_a irrespective of their distant phylogenetic relationship. The free ratio model showed that CHUP1 maintained purifying selection, whereas CHUP1-like_a and CHUP1-like_b have adaptive functions between SCC4 plants and quinoa. Similarly, rice and maize branches displayed functional diversification on CHUP1-like_b. Relative gene expression data showed that during the subcellular compartmentalization process of Bienertia, CHUP1 and actin-binding proteins (ABP) genes showed a similar pattern of expression. Altogether, the results of this study provide insight into the evolutionary and functional details of CHUP1 and its associated proteins in the development of the SCC4 system in comparison with other C3, C4, and CAM model plants.
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Affiliation(s)
- So Youn Won
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Prabhakaran Soundararajan
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Vadivelmurugan Irulappan
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
| | - Jung Sun Kim
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju-si, Jeollabuk-do, South Korea
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2
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Han SY, Kim WY, Kim JS, Hwang I. Comparative transcriptomics reveals the role of altered energy metabolism in the establishment of single-cell C 4 photosynthesis in Bienertia sinuspersici. FRONTIERS IN PLANT SCIENCE 2023; 14:1202521. [PMID: 37476170 PMCID: PMC10354284 DOI: 10.3389/fpls.2023.1202521] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2023] [Accepted: 05/31/2023] [Indexed: 07/22/2023]
Abstract
Single-cell C4 photosynthesis (SCC4) in terrestrial plants without Kranz anatomy involves three steps: initial CO2 fixation in the cytosol, CO2 release in mitochondria, and a second CO2 fixation in central chloroplasts. Here, we investigated how the large number of mechanisms underlying these processes, which occur in three different compartments, are orchestrated in a coordinated manner to establish the C4 pathway in Bienertia sinuspersici, a SCC4 plant. Leaves were subjected to transcriptome analysis at three different developmental stages. Functional enrichment analysis revealed that SCC4 cycle genes are coexpressed with genes regulating cyclic electron flow and amino/organic acid metabolism, two key processes required for the production of energy molecules in C3 plants. Comparative gene expression profiling of B. sinuspersici and three other species (Suaeda aralocaspica, Amaranthus hypochondriacus, and Arabidopsis thaliana) showed that the direction of metabolic flux was determined via an alteration in energy supply in peripheral chloroplasts and mitochondria via regulation of gene expression in the direction of the C4 cycle. Based on these results, we propose that the redox homeostasis of energy molecules via energy metabolism regulation is key to the establishment of the SCC4 pathway in B. sinuspersici.
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Affiliation(s)
- Sang-Yun Han
- Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
| | - Woe-Yeon Kim
- Division of Applied Life Science (BK21+) and Research Institute of Life Science, Institute of Agriculture and Life Sciences, Gyeongsang National University, Jinju, Republic of Korea
| | - Jung Sun Kim
- Genomic Division, Department of Agricultural Bio-Resources, National Institute of Agricultural Sciences, Rural Development Administration, Jeonju, Republic of Korea
| | - Inhwan Hwang
- Department of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea
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3
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Yanagisawa M, Chuong SDX. Chloroplast Envelopes Play a Role in the Formation of Autophagy-Related Structures in Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:443. [PMID: 36771525 PMCID: PMC9920391 DOI: 10.3390/plants12030443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 01/12/2023] [Accepted: 01/16/2023] [Indexed: 06/18/2023]
Abstract
Autophagy is a degradation process of cytoplasmic components that is conserved in eukaryotes. One of the hallmark features of autophagy is the formation of double-membrane structures known as autophagosomes, which enclose cytoplasmic content destined for degradation. Although the membrane source for the formation of autophagosomes remains to be determined, recent studies indicate the involvement of various organelles in autophagosome biogenesis. In this study, we examined the autophagy process in Bienertia sinuspersici: one of four terrestrial plants capable of performing C4 photosynthesis in a single cell (single-cell C4 species). We demonstrated that narrow tubules (stromule-like structures) 30-50 nm in diameter appear to extend from chloroplasts to form the membrane-bound structures (autophagosomes or autophagy-related structures) in chlorenchyma cells of B. sinuspersici during senescence and under oxidative stress. Immunoelectron microscopic analysis revealed the localization of stromal proteins to the stromule-like structures, sequestering portions of the cytoplasm in chlorenchyma cells of oxidative stress-treated leaves of B. sinuspersici and Arabidopsis thaliana. Moreover, the fluorescent marker for autophagosomes GFP-ATG8, colocalized with the autophagic vacuole maker neutral red in punctate structures in close proximity to the chloroplasts of cells under oxidative stress conditions. Together our results implicate a role for chloroplast envelopes in the autophagy process induced during senescence or under certain stress conditions in plants.
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Lung SC, Yogadasan N, Yanagisawa M, Chuong SDX. Protoplast Isolation and Transfection in the Single-Cell C 4 Species Bienertia sinuspersici. Methods Mol Biol 2022; 2464:21-28. [PMID: 35258822 DOI: 10.1007/978-1-0716-2164-6_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
We have developed an optimized protocol for isolating protoplasts from chlorenchyma cells of the single-cell C4 species Bienertia sinuspersici. The isolated protoplasts maintained the integrity of the unique single-cell C4 intracellular compartmentation of organelles as observed in chlorenchyma cells after cell wall digestion. Approximately over 80% of isolated protoplasts expressed the fusion reporter gene following the polyethylene glycol-mediated transfection procedures. Overall, fluorescent protein fusion tagged with various intraorganellular sorting signals validated the potential use of the transient gene expression system in subcellular localization and organelle dynamics studies.
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Affiliation(s)
- Shiu-Cheung Lung
- School of Biological Sciences, University of Hong Kong, Pokfulam, Hong Kong, SAR, China
| | | | - Makoto Yanagisawa
- Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA
| | - Simon D X Chuong
- Department of Biology, University of Waterloo, Waterloo, ON, Canada.
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5
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Mai KKK, Gao P, Kang BH. Electron Microscopy Views of Dimorphic Chloroplasts in C4 Plants. FRONTIERS IN PLANT SCIENCE 2020; 11:1020. [PMID: 32719711 PMCID: PMC7350421 DOI: 10.3389/fpls.2020.01020] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 06/22/2020] [Indexed: 05/02/2023]
Abstract
C4 plants enhance photosynthesis efficiency by concentrating CO2 to the site of Rubisco action. Chloroplasts in C4 plants exhibit structural dimorphism because thylakoid architectures vary depending on energy requirements. Advances in electron microscopy imaging capacity and sample preparation technologies allowed characterization of thylakoid structures and their macromolecular arrangements with unprecedented precision mostly in C3 plants. The thylakoid is assembled during chloroplast biogenesis through collaboration between the plastid and nuclear genomes. Recently, the membrane dynamics involved in the assembly process has been investigated with 3D electron microscopy, and molecular factors required for thylakoid construction have been characterized. The two classes of chloroplasts in C4 plants arise from common precursors, but little is known about how a single type of chloroplasts grow, divide, and differentiate to mature into distinct chloroplasts. Here, we outline the thylakoid structure and its assembly processes in C3 plants to discuss ultrastructural analyses of dimorphic chloroplast biogenesis in C4 plant species. Future directions for electron microscopy research of C4 photosynthetic systems are also proposed.
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Mai KKK, Yeung WT, Han SY, Cai X, Hwang I, Kang BH. Electron Tomography Analysis of Thylakoid Assembly and Fission in Chloroplasts of a Single-Cell C4 plant, Bienertia sinuspersici. Sci Rep 2019; 9:19640. [PMID: 31873131 PMCID: PMC6927967 DOI: 10.1038/s41598-019-56083-w] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2019] [Accepted: 12/02/2019] [Indexed: 01/31/2023] Open
Abstract
Bienertia sinuspersici is a single-cell C4 plant species of which chlorenchyma cells have two distinct groups of chloroplasts spatially segregated in the cytoplasm. The central vacuole encloses most chloroplasts at the cell center and confines the rest of the chloroplasts near the plasma membrane. Young chlorenchyma cells, however, do not have large vacuoles and their chloroplasts are homogenous. Therefore, maturing Bienertia chlorenchyma cells provide a unique opportunity to investigate chloroplast proliferation in the central cluster and the remodeling of chloroplasts that have been displaced by the vacuole to the cell periphery. Chloroplast numbers and sizes increased, more notably, during later stages of maturation than the early stages. Electron tomography analyses indicated that chloroplast enlargement is sustained by thylakoid growth and that invaginations from the inner envelope membrane contributed to thylakoid assembly. Grana stacks acquired more layers, differentiating them from stroma thylakoids as central chloroplasts matured. In peripheral chloroplasts, however, grana stacks stretched out to a degree that the distinction between grana stacks and stroma thylakoids was obscured. In central chloroplasts undergoing division, thylakoids inside the cleavage furrow were kinked and severed. Grana stacks in the division zone were disrupted, and large complexes in their membranes were dislocated, suggesting the existence of a thylakoid fission machinery.
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Affiliation(s)
- Keith Ka Ki Mai
- Centre for Cell and Developmental Biology, State Key Laboratory for Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
| | - Wai-Tsun Yeung
- Centre for Cell and Developmental Biology, State Key Laboratory for Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China
| | - Sang-Yun Han
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 37673, Korea
| | - Xiaohao Cai
- Mullard Space Science laboratory, Holmbury St. Mary Dorking, Surrey, RH5 6NT, UK
| | - Inhwan Hwang
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang, 37673, Korea
| | - Byung-Ho Kang
- Centre for Cell and Developmental Biology, State Key Laboratory for Agrobiotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong, China.
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7
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Wang L, Ma G, Wang H, Cheng C, Mu S, Quan W, Jiang L, Zhao Z, Zhang Y, Zhang K, Wang X, Tian C, Zhang Y. A draft genome assembly of halophyte Suaeda aralocaspica, a plant that performs C4 photosynthesis within individual cells. Gigascience 2019; 8:giz116. [PMID: 31513708 PMCID: PMC6741815 DOI: 10.1093/gigascience/giz116] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 07/11/2019] [Accepted: 08/27/2019] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND The halophyte Suaeda aralocaspica performs complete C4 photosynthesis within individual cells (SCC4), which is distinct from typical C4 plants, which require the collaboration of 2 types of photosynthetic cells. However, despite SCC4 plants having features that are valuable in engineering higher photosynthetic efficiencies in agriculturally important C3 species such as rice, there are no reported sequenced SCC4 plant genomes, limiting our understanding of the mechanisms involved in, and evolution of, SCC4 photosynthesis. FINDINGS Using Illumina and Pacific Biosciences sequencing platforms, we generated ∼202 Gb of clean genomic DNA sequences having a 433-fold coverage based on the 467 Mb estimated genome size of S. aralocaspica. The final genome assembly was 452 Mb, consisting of 4,033 scaffolds, with a scaffold N50 length of 1.83 Mb. We annotated 29,604 protein-coding genes using Evidence Modeler based on the gene information from ab initio predictions, homology levels with known genes, and RNA sequencing-based transcriptome evidence. We also annotated noncoding genes, including 1,651 long noncoding RNAs, 21 microRNAs, 382 transfer RNAs, 88 small nuclear RNAs, and 325 ribosomal RNAs. A complete (circular with no gaps) chloroplast genome of S. aralocaspica 146,654 bp in length was also assembled. CONCLUSIONS We have presented the genome sequence of the SCC4 plant S. aralocaspica. Knowledge of the genome of S. aralocaspica should increase our understanding of the evolution of SCC4 photosynthesis and contribute to the engineering of C4 photosynthesis into economically important C3 crops.
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Affiliation(s)
- Lei Wang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Ganglong Ma
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
| | - Hongling Wang
- Central Lab, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
| | - Chao Cheng
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
| | - Shuyong Mu
- Central Lab, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
| | - Weili Quan
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
| | - Li Jiang
- Key Laboratory of Biogeography and Bioresource in Arid Land, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
| | - Zhenyong Zhao
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
| | - Yu Zhang
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
| | - Ke Zhang
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
| | - Xuelian Wang
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
| | - Changyan Tian
- State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi 830011, China
- University of Chinese Academy of Sciences, No.19(A) Yuquan Road, Shijingshan District, Beijing 100049, China
| | - Yi Zhang
- Center for Genome Analysis, ABLife Inc., 388 Gaoxin 2nd Road, Wuhan, Hubei 430075, China
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8
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Pignon CP, Lundgren MR, Osborne CP, Long SP. Bundle sheath chloroplast volume can house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:357-365. [PMID: 30407578 PMCID: PMC6305190 DOI: 10.1093/jxb/ery345] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 09/13/2018] [Indexed: 05/15/2023]
Abstract
C4 leaves confine Rubisco to bundle sheath cells. Thus, the size of bundle sheath compartments and the total volume of chloroplasts within them limit the space available for Rubisco. Rubisco activity limits photosynthesis at low temperatures. C3 plants counter this limitation by increasing leaf Rubisco content, yet few C4 species do the same. Because C3 plants usually outperform C4 plants in chilling environments, it has been suggested that there is insufficient chloroplast volume available in the bundle sheath of C4 leaves to allow such an increase in Rubisco at low temperatures. We investigated this potential limitation by measuring bundle sheath and mesophyll compartment volumes and chloroplast contents, as well as leaf thickness and inter-veinal distance, in three C4 Andropogoneae grasses: two crops (Zea mays and Saccharum officinarum) and a wild, chilling-tolerant grass (Miscanthus × giganteus). A wild C4 Paniceae grass (Alloteropsis semialata) was also included. Despite significant structural differences between species, there was no evidence of increased bundle sheath chloroplast volume per leaf area available to the chilling-tolerant species, relative to the chilling-sensitive ones. Maximal theoretical photosynthetic capacity of the leaf far exceeded the photosynthetic rates achieved even at low temperatures. C4 bundle sheath cells therefore have the chloroplast volume to house sufficient Rubisco to avoid limiting C4 photosynthesis during chilling.
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Affiliation(s)
- Charles P Pignon
- University of Illinois, Carl R. Woese Institute for Genomic Biology and Departments of Crop Sciences and of Plant Biology, Urbana, IL, USA
| | - Marjorie R Lundgren
- Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, USA
- Arnold Arboretum, Harvard University, Boston, USA
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
| | - Colin P Osborne
- Department of Animal and Plant Sciences, Alfred Denny Building, University of Sheffield, Sheffield, UK
| | - Stephen P Long
- University of Illinois, Carl R. Woese Institute for Genomic Biology and Departments of Crop Sciences and of Plant Biology, Urbana, IL, USA
- Lancaster Environment Centre, Lancaster University, Lancaster, UK
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9
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Wimmer D, Bohnhorst P, Shekhar V, Hwang I, Offermann S. Transit peptide elements mediate selective protein targeting to two different types of chloroplasts in the single-cell C4 species Bienertia sinuspersici. Sci Rep 2017; 7:41187. [PMID: 28112241 PMCID: PMC5253730 DOI: 10.1038/srep41187] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2016] [Accepted: 12/16/2016] [Indexed: 01/23/2023] Open
Abstract
Bienertia sinuspersici is a terrestrial plant that performs C4 photosynthesis within individual cells through operating a carbon concentrating mechanism between different subcellular domains including two types of chloroplasts. It is currently unknown how differentiation of two highly specialized chloroplasts within the same cell occurs as no similar cases have been reported. Here we show that this differentiation in photosynthetic cells of B. sinuspersici is enabled by a transit peptide (TP) mediated selective protein targeting mechanism. Mutations in the TPs cause loss of selectivity but not general loss of chloroplast import, indicating the mechanism operates by specifically blocking protein accumulation in one chloroplast type. Hybrid studies indicate that this selectivity is transferable to transit peptides of plants which perform C4 by cooperative function of chloroplasts between two photosynthetic cells. Codon swap experiments as well as introducing an artificial bait mRNA show that RNA affects are not crucial for the sorting process. In summary, our analysis shows how the mechanism of subcellular targeting to form two types of chloroplast within the same cell can be achieved. This information is not only crucial for understanding single-cell C4 photosynthesis; it provides new insights in control of subcellular protein targeting in cell biology.
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Affiliation(s)
- Diana Wimmer
- Institute for Botany, Leibniz University Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
| | - Philipp Bohnhorst
- Institute for Botany, Leibniz University Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
| | - Vinay Shekhar
- Faculty of Biology, Department Biology I – Botany, Ludwig-Maximilians-University Muenchen, Grosshaderner Strasse 2-4, 82152 Planegg-Martinsried, Germany
| | - Inhwan Hwang
- Division of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, Pohang 790–784, Korea
| | - Sascha Offermann
- Institute for Botany, Leibniz University Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany
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10
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Jurić I, González-Pérez V, Hibberd JM, Edwards G, Burroughs NJ. Size matters for single-cell C4 photosynthesis in Bienertia. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:255-267. [PMID: 27733441 PMCID: PMC5853773 DOI: 10.1093/jxb/erw374] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 09/28/2016] [Indexed: 05/29/2023]
Abstract
Bienertia cycloptera belongs to a diverse set of plants, recently discovered to perform C4 photosynthesis within individual mesophyll cells. How these plants accomplish high photosynthetic efficiency without adopting Kranz anatomy remains unanswered. By modelling the processes of diffusion, capture, and release of carbon dioxide and oxygen inside a typical Bienertia mesophyll cell geometry, we show that a spatial separation as low as 10 μm between the primary and the secondary carboxylases, can, on its own, provide enough diffusive resistance to sustain a viable C4 pathway at 20 °C, with a CO2 leakage <35%. This critical separation corresponds to a cell diameter of 50 μm, consistent with the observed range where Bienertia's mesophyll cells start to develop their characteristic mature anatomy. Our results are robust to significant alterations in model assumptions and environmental conditions, their applicability extending even to aquatic plants.
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Affiliation(s)
- Ivan Jurić
- Warwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, UK
- Institute of Physics, Bijenička c. 46, PO Box 304, HR-10001 Zagreb, Croatia
| | | | - Julian M Hibberd
- Department of Plant Sciences, University of Cambridge, Cambridge CB2 3EA, UK
| | - Gerald Edwards
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Nigel J Burroughs
- Warwick Systems Biology Centre, University of Warwick, Coventry CV4 7AL, UK
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11
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Erlinghaeuser M, Hagenau L, Wimmer D, Offermann S. Development, subcellular positioning and selective protein accumulation in the dimorphic chloroplasts of single-cell C4 species. CURRENT OPINION IN PLANT BIOLOGY 2016; 31:76-82. [PMID: 27061048 DOI: 10.1016/j.pbi.2016.03.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2015] [Revised: 03/17/2016] [Accepted: 03/28/2016] [Indexed: 05/17/2023]
Abstract
C4 photosynthesis is typically associated with a carbon concentrating mechanism based on close collaboration between two photosynthetic cell types (Kranz C4). Surprisingly, four species in the family Chenopodiaceae have been described, which perform all required steps for a functional and effective C4 cycle within individual photosynthetic cells. These single-cell C4 species utilize a unique subcellular compartmentation and two functionally different chloroplast types that mimic the functions of the two cell types of the Kranz C4 system. In this review, we will summarize and discuss studies on chloroplast development, positioning and selective accumulation of nuclear encoded proteins, which ultimately allow the operation of a C4 carbon concentrating mechanism within individual cells.
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Affiliation(s)
| | - Lisa Hagenau
- Institute for Botany, Leibniz University Hannover, Germany
| | - Diana Wimmer
- Institute for Botany, Leibniz University Hannover, Germany
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12
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Koteyeva NK, Voznesenskaya EV, Berry JO, Cousins AB, Edwards GE. The unique structural and biochemical development of single cell C4 photosynthesis along longitudinal leaf gradients in Bienertia sinuspersici and Suaeda aralocaspica (Chenopodiaceae). JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:2587-601. [PMID: 26957565 PMCID: PMC4861011 DOI: 10.1093/jxb/erw082] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Temporal and spatial patterns of photosynthetic enzyme expression and structural maturation of chlorenchyma cells along longitudinal developmental gradients were characterized in young leaves of two single cell C4 species, Bienertia sinuspersici and Suaeda aralocaspica Both species partition photosynthetic functions between distinct intracellular domains. In the C4-C domain, C4 acids are formed in the C4 cycle during capture of atmospheric CO2 by phosphoenolpyruvate carboxylase. In the C4-D domain, CO2 released in the C4 cycle via mitochondrial NAD-malic enzyme is refixed by Rubisco. Despite striking differences in origin and intracellular positioning of domains, these species show strong convergence in C4 developmental patterns. Both progress through a gradual developmental transition towards full C4 photosynthesis, with an associated increase in levels of photosynthetic enzymes. Analysis of longitudinal sections showed undeveloped domains at the leaf base, with Rubisco rbcL mRNA and protein contained within all chloroplasts. The two domains were first distinguishable in chlorenchyma cells at the leaf mid-regions, but still contained structurally similar chloroplasts with equivalent amounts of rbcL mRNA and protein; while mitochondria had become confined to just one domain (proto-C4-D). The C4 state was fully formed towards the leaf tips, Rubisco transcripts and protein were compartmentalized specifically to structurally distinct chloroplasts in the C4-D domains indicating selective regulation of Rubisco expression may occur by control of transcription or stability of rbcL mRNA. Determination of CO2 compensation points showed young leaves were not functionally C4, consistent with cytological observations of the developmental progression from C3 default to intermediate to C4 photosynthesis.
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Affiliation(s)
- Nuria K Koteyeva
- Laboratory of Anatomy and Morphology, VL Komarov Botanical Institute of Russian Academy of Sciences, St Petersburg, 197376, Russia
| | - Elena V Voznesenskaya
- Laboratory of Anatomy and Morphology, VL Komarov Botanical Institute of Russian Academy of Sciences, St Petersburg, 197376, Russia
| | - James O Berry
- Department of Biological Sciences, State University of New York, Buffalo, NY 14260, USA
| | - Asaph B Cousins
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
| | - Gerald E Edwards
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
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13
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Stata M, Sage TL, Rennie TD, Khoshravesh R, Sultmanis S, Khaikin Y, Ludwig M, Sage RF. Mesophyll cells of C4 plants have fewer chloroplasts than those of closely related C3 plants. PLANT, CELL & ENVIRONMENT 2014; 37:2587-2600. [PMID: 24689501 DOI: 10.1111/pce.12331] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2013] [Revised: 03/03/2014] [Accepted: 03/17/2014] [Indexed: 06/03/2023]
Abstract
The evolution of C(4) photosynthesis from C(3) ancestors eliminates ribulose bisphosphate carboxylation in the mesophyll (M) cell chloroplast while activating phosphoenolpyruvate (PEP) carboxylation in the cytosol. These changes may lead to fewer chloroplasts and different chloroplast positioning within M cells. To evaluate these possibilities, we compared chloroplast number, size and position in M cells of closely related C(3), C(3) -C(4) intermediate and C(4) species from 12 lineages of C(4) evolution. All C(3) species had more chloroplasts per M cell area than their C(4) relatives in high-light growth conditions. C(3) species also had higher chloroplast coverage of the M cell periphery than C(4) species, particularly opposite intercellular air spaces. In M cells from 10 of the 12 C(4) lineages, a greater fraction of the chloroplast envelope was pulled away from the plasmalemma in the C(4) species than their C(3) relatives. C(3) -C(4) intermediate species generally exhibited similar patterns as their C(3) relatives. We interpret these results to reflect adaptive shifts that facilitate efficient C(4) function by enhancing diffusive access to the site of primary carbon fixation in the cytosol. Fewer chloroplasts in C(4) M cells would also reduce shading of the bundle sheath chloroplasts, which also generate energy required by C(4) photosynthesis.
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Affiliation(s)
- Matt Stata
- Department of Ecology and Evolutionary Biology, The University of Toronto, Toronto, ON, Canada, M5S 3B2
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Chen T, Zhu XG, Lin Y. Major alterations in transcript profiles between C3-C4 and C4 photosynthesis of an amphibious species Eleocharis baldwinii. PLANT MOLECULAR BIOLOGY 2014; 86:93-110. [PMID: 25008152 DOI: 10.1007/s11103-014-0215-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2013] [Accepted: 06/11/2014] [Indexed: 06/03/2023]
Abstract
Engineering C4 photosynthetic metabolism into C3 crops is regarded as a major strategy to increase crop productivity, and clarification of the evolutionary processes of C4 photosynthesis can help the better use of this strategy. Here, Eleocharis baldwinii, a species in which C4 photosynthesis can be induced from a C3-C4 state under either environmental or ABA treatments, was used to identify the major transcriptional modifications during the process from C3-C4 to C4. The transcriptomic comparison suggested that in addition to the major differences in C4 core pathway, the pathways of glycolysis, citrate acid metabolism and protein synthesis were dramatically modified during the inducement of C4 photosynthetic states. Transcripts of many transporters, including not only metabolite transporters but also ion transporters, were dramatically increased in C4 photosynthetic state. Many candidate regulatory genes with unidentified functions were differentially expressed in C3-C4 and C4 photosynthetic states. Finally, it was indicated that ABA, auxin signaling and DNA methylation play critical roles in the regulation of C4 photosynthesis. In summary, by studying the different photosynthetic states of the same species, this work provides the major transcriptional differences between C3-C4 and C4 photosynthesis, and many of the transcriptional differences are potentially related to C4 development and therefore are the potential targets for reverse genetics studies.
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Affiliation(s)
- Taiyu Chen
- National Key Laboratory of Crop Genetic Improvement, National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan, 430070, China
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Sharpe RM, Offermann S. One decade after the discovery of single-cell C4 species in terrestrial plants: what did we learn about the minimal requirements of C4 photosynthesis? PHOTOSYNTHESIS RESEARCH 2014; 119:169-80. [PMID: 23494362 DOI: 10.1007/s11120-013-9810-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Accepted: 03/04/2013] [Indexed: 05/17/2023]
Abstract
Until about 10 years ago the general accepted textbook knowledge was that terrestrial C4 photosynthesis requires separation of photosynthetic functions into two specialized cell types, the mesophyll and bundle sheath cells forming the distinctive Kranz anatomy typical for C4 plants. This paradigm has been broken with the discovery of Suaeda aralocaspica, a chenopod from central Asia, performing C4 photosynthesis within individual chlorenchyma cells. Since then, three more single-cell C4 (SCC4) species have been discovered in the genus Bienertia. They are interesting not only because of their unusual mode of photosynthesis but also present a puzzle for cell biologists. In these species, two morphological and biochemical specialized types of chloroplasts develop within individual chlorenchyma cells, a situation that has never been observed in plants before. Here we review recent literature concerning the biochemistry, physiology, and molecular biology of SCC4 photosynthesis. Particularly, we focus on what has been learned in relation to the following questions: How does the specialized morphology required for the operation of SCC4 develop and is there a C3 intermediate type of photosynthesis during development? What is the degree of specialization between the two chloroplast types and how does this compare to the chloroplasts of Kranz C4 species? How do nucleus-encoded proteins that are targeted to chloroplasts accumulate differentially in the two chloroplast types and how efficient is the CO2 concentrating mechanism in SCC4 species compared to the Kranz C4 forms?
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Affiliation(s)
- Richard M Sharpe
- School of Biological Science, Washington State University, Pullman, WA, USA
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Lung SC, Yanagisawa M, Chuong SDX. Recent progress in the single-cell C4 photosynthesis in terrestrial plants. ACTA ACUST UNITED AC 2012. [DOI: 10.1007/s11515-012-9248-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Lung SC, Yanagisawa M, Chuong SDX. Isolation of dimorphic chloroplasts from the single-cell C4 species Bienertia sinuspersici. PLANT METHODS 2012; 8:8. [PMID: 22394490 PMCID: PMC3310801 DOI: 10.1186/1746-4811-8-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/16/2012] [Accepted: 03/06/2012] [Indexed: 05/31/2023]
Abstract
Three terrestrial plants are known to perform C4 photosynthesis without the dual-cell system by partitioning two distinct types of chloroplasts in separate cytoplasmic compartments. We report herein a protocol for isolating the dimorphic chloroplasts from Bienertia sinuspersici. Hypo-osmotically lysed protoplasts under our defined conditions released intact compartments containing the central chloroplasts and intact vacuoles with adhering peripheral chloroplasts. Following Percoll step gradient purification both chloroplast preparations demonstrated high homogeneities as evaluated from the relative abundance of respective protein markers. This protocol will open novel research directions toward understanding the mechanism of single-cell C4 photosynthesis.
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Affiliation(s)
- Shiu-Cheung Lung
- Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Makoto Yanagisawa
- Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
| | - Simon DX Chuong
- Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
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Rosnow J, Offermann S, Park J, Okita TW, Tarlyn N, Dhingra A, Edwards GE. In vitro cultures and regeneration of Bienertia sinuspersici (Chenopodiaceae) under increasing concentrations of sodium chloride and carbon dioxide. PLANT CELL REPORTS 2011; 30:1541-53. [PMID: 21476090 DOI: 10.1007/s00299-011-1067-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2010] [Revised: 02/16/2011] [Accepted: 03/25/2011] [Indexed: 05/25/2023]
Abstract
To study the developmental transition of chloroplasts from C(3) to C(4) photosynthesis in the terrestrial single-cell C(4) species Bienertia sinuspersici, a regeneration protocol was developed. Stem explant material developed callus either with or without red nodular structures (RNS) when cultured on Murashige-Skoog (MS) salts and vitamins, supplemented with 5 mM phosphate, plus 1 mg L(-1) dichloropenoxy-acetic acid (2,4-D), and 87 mM sucrose (Stage 1 media). Only calli having RNS were able to regenerate plantlets. MS media plus phosphate was used throughout regeneration, with the Stage 2 media containing 2 mg L(-1) 6-benzylaminopurine, 43 mM sucrose and 1.5% soluble starch. Stage 3 media had no hormones or organic sources of carbon, and cultures were grown under ambient (~400 ppm) versus CO(2) enrichment (1.2% CO(2)). When calli without RNS were cultured under Stage 3 conditions with 1.2% CO(2), there was an increase in growth, protein content, and photosystem II yield, while structural and biochemical analyses indicated the cells in the calli had C(3) type photosynthesis. CO(2) enrichment during growth of RNS during Stage 3 had a large effect on regeneration success, increasing efficiency of shoot and root development, size of plantlets, leaf soluble protein, and chlorophyll concentration. Anatomical analysis of plantlets, which developed under 1.2% CO(2), showed leaves developed C(4) type chlorenchyma cells, including expression of key C(4) biochemical enzymes. Increasing salinity in the media, from 0 to 200 mM NaCl, increased tissue osmolality, average plantlet area and regeneration success, but did not affect protein or chlorophyll content.
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Affiliation(s)
- Josh Rosnow
- School of Biological Sciences, Washington State University, Pullman, WA 99164-4236, USA
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Lung SC, Yanagisawa M, Chuong SDX. Protoplast isolation and transient gene expression in the single-cell C4 species, Bienertia sinuspersici. PLANT CELL REPORTS 2011; 30:473-84. [PMID: 21103876 DOI: 10.1007/s00299-010-0953-2] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2010] [Revised: 10/31/2010] [Accepted: 11/03/2010] [Indexed: 05/25/2023]
Abstract
Although transient gene expression using reporters such as green fluorescent protein is a versatile tool for examining gene functions and intracellular protein trafficking, the establishment of a highly efficient gene manipulation method remains a challenge in many plant species. A reliable transformation protocol has not yet been established for the three single-cell C(4) species, despite their potential of serving as model systems for their extraordinary C(4) photosynthetic metabolism. We report the first protocol optimized for isolating a large-scale and homogenous population of protoplasts from chlorenchyma cells of the single-cell C(4) species Bienertia sinuspersici. Cytochemical staining confirmed the preservation of the unusual subcellular compartmentation of organelles in chlorenchyma cells after cell wall digestion. Approximately 84% of isolated protoplasts expressed the reporter fluorescent protein following our optimized polyethylene glycol-mediated transfection procedures. Fluorescent fusion protein tagged with various intracellular sorting signals demonstrated potential use of the transient gene expression system in subcellular protein localization and organelle dynamics studies. Further applications of the current protoplast isolation and transfection techniques in understanding the novel single-cell C(4) photosynthetic mechanism are discussed.
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Affiliation(s)
- Shiu-Cheung Lung
- Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, ON N2L 3G1, Canada
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Offermann S, Okita TW, Edwards GE. Resolving the compartmentation and function of C4 photosynthesis in the single-cell C4 species Bienertia sinuspersici. PLANT PHYSIOLOGY 2011; 155:1612-28. [PMID: 21263039 PMCID: PMC3091117 DOI: 10.1104/pp.110.170381] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2010] [Accepted: 01/15/2011] [Indexed: 05/17/2023]
Abstract
Bienertia sinuspersici is a land plant known to perform C(4) photosynthesis through the location of dimorphic chloroplasts in separate cytoplasmic domains within a single photosynthetic cell. A protocol was developed with isolated protoplasts to obtain peripheral chloroplasts (P-CP), a central compartment (CC), and chloroplasts from the CC (C-CP) to study the subcellular localization of photosynthetic functions. Analyses of these preparations established intracellular compartmentation of processes to support a NAD-malic enzyme (ME)-type C(4) cycle. Western-blot analyses indicated that the CC has Rubisco from the C(3) cycle, the C(4) decarboxylase NAD-ME, a mitochondrial isoform of aspartate aminotransferase, and photorespiratory markers, while the C-CP and P-CP have high levels of Rubisco and pyruvate, Pidikinase, respectively. Other enzymes for supporting a NAD-ME cycle via an aspartate-alanine shuttle, carbonic anhydrase, phosophoenolpyruvate carboxylase, alanine, and an isoform of aspartate aminotransferase are localized in the cytosol. Functional characterization by photosynthetic oxygen evolution revealed that only the C-CP have a fully operational C(3) cycle, while both chloroplast types have the capacity to photoreduce 3-phosphoglycerate. The P-CP were enriched in a putative pyruvate transporter and showed light-dependent conversion of pyruvate to phosphoenolpyruvate. There is a larger investment in chloroplasts in the central domain than in the peripheral domain (6-fold more chloroplasts and 4-fold more chlorophyll). The implications of this uneven distribution for the energetics of the C(4) and C(3) cycles are discussed. The results indicate that peripheral and central compartment chloroplasts in the single-cell C(4) species B. sinuspersici function analogous to mesophyll and bundle sheath chloroplasts of Kranz-type C(4) species.
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Affiliation(s)
| | | | - Gerald E. Edwards
- School of Biological Sciences (S.O., G.E.E.) and Institute of Biological Chemistry (T.W.O.), Washington State University, Pullman, Washington 99164
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Chapter 3. New insights into plant vacuolar structure and dynamics. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY 2009; 277:103-35. [PMID: 19766968 DOI: 10.1016/s1937-6448(09)77003-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The plant vacuole is a multifunctional organelle and is essential for plant development and growth. The most distinctive feature of the plant vacuole is its size, which usually occupies over 80-90% of the cell volume in well-developed somatic cells, and is therefore highly involved in cell growth and plant body size. Recent progress in the visualization of the vacuole, together with developments in image analysis, has revealed the highly organized and complex morphology of the vacuole, as well as its dynamics. The plant vacuolar membrane (VM) forms not only a typically large vacuole but also other structures, such as tubular structures, transvacuolar strands, bulbs, and sheets. In higher plant cells, actin microfilaments are mainly located near the VM and are involved in vacuolar shape changes with the actin-myosin systems. Most recently, microtubule-dependent regulation of vacuolar structures in moss plant cells was reported, suggesting a diversity of mechanisms regulating vacuolar morphogenesis.
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