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Wolfe JM, Breinholt JW, Crandall KA, Lemmon AR, Lemmon EM, Timm LE, Siddall ME, Bracken-Grissom HD. A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans. Proc Biol Sci 2020; 286:20190079. [PMID: 31014217 DOI: 10.1098/rspb.2019.0079] [Citation(s) in RCA: 66] [Impact Index Per Article: 16.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Comprising over 15 000 living species, decapods (crabs, shrimp and lobsters) are the most instantly recognizable crustaceans, representing a considerable global food source. Although decapod systematics have received much study, limitations of morphological and Sanger sequence data have yet to produce a consensus for higher-level relationships. Here, we introduce a new anchored hybrid enrichment kit for decapod phylogenetics designed from genomic and transcriptomic sequences that we used to capture new high-throughput sequence data from 94 species, including 58 of 179 extant decapod families, and 11 of 12 major lineages. The enrichment kit yields 410 loci (greater than 86 000 bp) conserved across all lineages of Decapoda, more clade-specific molecular data than any prior study. Phylogenomic analyses recover a robust decapod tree of life strongly supporting the monophyly of all infraorders, and monophyly of each of the reptant, 'lobster' and 'crab' groups, with some results supporting pleocyemate monophyly. We show that crown decapods diverged in the Late Ordovician and most crown lineages diverged in the Triassic-Jurassic, highlighting a cryptic Palaeozoic history, and post-extinction diversification. New insights into decapod relationships provide a phylogenomic window into morphology and behaviour, and a basis to rapidly and cheaply expand sampling in this economically and ecologically significant invertebrate clade.
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Affiliation(s)
- Joanna M Wolfe
- 1 Division of Invertebrate Zoology and Sackler Institute of Comparative Genomics, American Museum of Natural History , New York, NY 10024 , USA.,2 Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology , Cambridge, MA 02139 , USA.,3 Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University , Cambridge, MA 02138 , USA
| | - Jesse W Breinholt
- 4 Florida Museum of Natural History, University of Florida , Gainesville, FL 32611 , USA.,5 RAPiD Genomics , Gainesville, FL 32601 , USA
| | - Keith A Crandall
- 6 Computational Biology Institute, The George Washington University , Ashburn, VA 20147 , USA.,7 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution , Washington, DC 20012 , USA
| | - Alan R Lemmon
- 8 Department of Scientific Computing, Florida State University , Dirac Science Library, Tallahassee, FL 32306 , USA
| | - Emily Moriarty Lemmon
- 9 Department of Biological Science, Florida State University , Tallahassee, FL 32306 , USA
| | - Laura E Timm
- 10 Department of Biological Sciences, Florida International University , North Miami, FL 33181 , USA
| | - Mark E Siddall
- 1 Division of Invertebrate Zoology and Sackler Institute of Comparative Genomics, American Museum of Natural History , New York, NY 10024 , USA
| | - Heather D Bracken-Grissom
- 10 Department of Biological Sciences, Florida International University , North Miami, FL 33181 , USA
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Haug C, Haug JT. Untangling the Gordian knot-further resolving the super-species complex of 300-million-year-old xiphosurids by reconstructing their ontogeny. Dev Genes Evol 2020; 230:13-26. [PMID: 32002661 PMCID: PMC7000541 DOI: 10.1007/s00427-020-00648-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 01/20/2020] [Indexed: 12/23/2022]
Abstract
The group Xiphosurida (horseshoe “crabs”) is today only represented by four species. However, in the fossil record, several dozen species have been described, especially from the Carboniferous (about 300 million years ago). Several species have been interpreted as representatives of Euproops or Belinurus, but there is ongoing discussion which of these species are valid and how they can be differentiated. Recent studies suggested that differences in the timing of individual development could provide information for species distinction, exemplified by studies on Euproops danae (Mazon Creek, USA) and Euproops sp. (“Piesproops”; Piesberg, Germany). For this study, we reinvestigated all Carboniferous xiphosurids from the British Coal Measures stored in the collections of the Natural History Museum London. Size comparisons of the specimens revealed nine size groups; the smaller specimens were originally labelled as Belinurus, the larger ones as Euproops. The nine size groups exhibit five different morphotypes differing in structures surrounding the posterior shield (= thoracetron): spines of different lengths and, in larger specimens, a more or less developed flange. Two of these morphotypes show significantly longer spines than the remaining specimens and could be conspecific as E. anthrax. The remaining specimens are interpreted as growth series of another species, presumably of E. rotundatus. An ontogenetic flange formation is also known from E. danae and the “Piesproops”, but the timing differs between all three species. In E. rotundatus, the flange develops rather late, but then comparably abruptly, which makes this development more metamorphic in relation to development in the other species.
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Affiliation(s)
- Carolin Haug
- Department of Biology II, LMU Munich, Biocenter, Großhaderner Str. 2, 82152, Planegg-Martinsried, Germany. .,GeoBio-Center of the LMU Munich, Richard-Wagner-Str. 10, 80333, Munich, Germany.
| | - Joachim T Haug
- Department of Biology II, LMU Munich, Biocenter, Großhaderner Str. 2, 82152, Planegg-Martinsried, Germany.,GeoBio-Center of the LMU Munich, Richard-Wagner-Str. 10, 80333, Munich, Germany
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3
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Haug JT, Haug C. Beetle larvae with unusually large terminal ends and a fossil that beats them all (Scraptiidae, Coleoptera). PeerJ 2019; 7:e7871. [PMID: 31632854 PMCID: PMC6796959 DOI: 10.7717/peerj.7871] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Accepted: 09/11/2019] [Indexed: 01/02/2023] Open
Abstract
Larvae, and especially fossil larvae, are challenging to deal with from a purely taxonomic view. Often one cannot determine which species the larvae belong to. Yet, larvae can still contribute to various scientific questions. Especially morphological traits of a fossil larva can be highly informative for reconstructing character evolution. Also the occurrence of specific larval types and larval characters in time and the disappearance of such forms can well be reconstructed also without being able to narrow down the phylogenetic relationship of a larva very far. Here, we report two new beetle larvae preserved in Baltic amber which are identified as representatives of Scraptiidae, based on an enlarged terminal end ('9th abdomen segment'); this is only the third record of such larvae. In comparison to modern forms, the terminal ends of the two new fossil larvae is even larger in relation to the remaining body than in any known larva. Unfortunately, our knowledge of such larvae in the modern fauna is very limited. Still, one of the two already known fossil larvae of Scraptiidae also has a very long terminal end, but not as long as those of the two new fossils. These three fossil larvae therefore seem to possess a specific morphology not known from the modern fauna. This might either mean that they (1) represent a now extinct larval morphology, a phenomenon well known in other euarthropodan lineages, or that (2) these forms represent a part of the larval phase not known from modern day species as they have not been described yet; such cases occur in closely related lineages. In any case, the fossils expand the known diversity of larval morphologies.
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Affiliation(s)
- Joachim T Haug
- Department of Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.,GeoBio-Center at LMU, München, Germany
| | - Carolin Haug
- Department of Biology II, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.,GeoBio-Center at LMU, München, Germany
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Haug JT, Müller P, Haug C. A 100-million-year old predator: a fossil neuropteran larva with unusually elongated mouthparts. ZOOLOGICAL LETTERS 2019; 5:29. [PMID: 31489222 PMCID: PMC6716810 DOI: 10.1186/s40851-019-0144-0] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 08/15/2019] [Indexed: 05/08/2023]
Abstract
BACKGROUND Biological diversity is a hot topic in current research, especially its observed decrease in modern times. Investigations of past ecosystems offer additional insights to help better understand the processes underlying biodiversity. The Cretaceous period is of special interest in this context, especially with respect to arthropods. During that period, representatives of many modern lineages appeared for the first time, while representatives of more ancient groups also co-occurred. At the same time, side branches of radiating groups with 'experimental morphologies' emerged that seemed to go extinct shortly afterwards. However, larval forms, with their morphological diversity, are largely neglected in such studies, but may provide important insights into morphological and ecological diversity and its changes in the past. RESULTS We present here a new fossil insectan larva, a larval lacewing, in Cretaceous amber, exhibiting a rather unusual, 'experimental' morphology. The specimen possesses extremely large (in relation to body size) mandibulo-maxillary piercing stylets. Additionally, the labial palps are very long and are subdivided into numerous elements, overall appearing antenniform. In other aspects, the larva resembles many other neuropteran-type larvae. CONCLUSIONS We provide a comparison that includes quantitative aspects of different types of neuropteran larvae to emphasise the exceptionality of the new larva, and discuss its possible relationships to known lineages of Neuroptera; possible interpretations are closer relationships to Dilaridae or Osmylidae. In any case, several of the observed characters must have evolved convergently. With this new find, we expand the known morphological diversity of neuropterans in the Cretaceous fauna.
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Affiliation(s)
- Joachim T. Haug
- Ludwig Maximilians University Munich, Biocenter, Großhaderner Str. 2, 82152 Planegg, Martinsried Germany
- GeoBio-Center at LMU, Richard-Wagner-Str. 10, 80333 Munich, Germany
| | | | - Carolin Haug
- Ludwig Maximilians University Munich, Biocenter, Großhaderner Str. 2, 82152 Planegg, Martinsried Germany
- GeoBio-Center at LMU, Richard-Wagner-Str. 10, 80333 Munich, Germany
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Haug JT, Haug C. A new glimpse on Mesozoic zooplankton-150 million-year-old lobster larvae. PeerJ 2017; 5:e2966. [PMID: 28168123 PMCID: PMC5292028 DOI: 10.7717/peerj.2966] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2016] [Accepted: 01/07/2017] [Indexed: 11/20/2022] Open
Abstract
Larvae of malacostracan crustaceans represent a large fraction of modern day zooplankton. Plankton is not only a major part of the modern marine ecosystem, but must have played an important role in the ecosystems of the past as well. Unfortunately, our knowledge about plankton composition of the past is still quite limited. As an important part of today's zooplankton, malacostracan larvae are still a rarity in the fossil record; many types of malacostracan larvae dominating the modern plankton have so far not been found as fossils. Here we report a new type of fossil malacostracan larva, found in the 150 million years old lithographic limestones of southern Germany (Solnhofen Lithographic Limestones). The three rather incomplete specimens mainly preserve the telson. A pronounced middle spine on the posterior edge of these specimens indicates that they are either larval forms of a clawed lobster or of an axiidean lobster, or of a closer relative to one of the two groups. The tergo-pleura are drawn out into distinct spines in one specimen, further supporting the interpretation as a larva of a clawed lobster or an early relative. The telson morphology also shows adaptations to a prolonged planktic life style, the latero-posterior edges are drawn out into distinct spines. Similar adaptations are known in larvae of the modern homarid lobster Nephrops norvegicus, not necessarily indicating a closer relationship, but convergent life styles. The new finds provide an important new insight into the composition of Mesozoic zooplankton and demonstrate the preservation potential of lithographic limestones.
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Affiliation(s)
- Joachim T. Haug
- Department of Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, Germany
| | - Carolin Haug
- Department of Biology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
- GeoBio-Center, Ludwig-Maximilians-Universität München, Germany
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Haug JT, Audo D, Charbonnier S, Palero F, Petit G, Abi Saad P, Haug C. The evolution of a key character, or how to evolve a slipper lobster. ARTHROPOD STRUCTURE & DEVELOPMENT 2016; 45:97-107. [PMID: 26319267 DOI: 10.1016/j.asd.2015.08.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2015] [Revised: 07/31/2015] [Accepted: 08/15/2015] [Indexed: 05/07/2023]
Abstract
A new fossil lobster from the Cretaceous of Lebanon, Charbelicaris maronites gen. et sp. nov., is presented here, while the former species 'Cancrinos' libanensis is re-described as Paracancrinos libanensis comb. nov. P. libanensis is shown to be closer related to the contemporary slipper lobsters than to Cancrinos claviger (lithographic limestones, Jurassic, southern Germany). A finely-graded evolutionary scenario for the slipper-lobster morphotype is reconstructed based on these fossil species and extant forms. The evolutionary changes that gave rise to the current plate-like antennae of Scyllaridae, a key apomorphy of this group, are traced back through time. The antenna of what is considered the oldest slipper lobster became petaloid and consisted of about 20 fully articulated elements. For this group the name Scyllarida sensu lato tax. nov. is introduced. In a next evolutionary step, the proximal articles became conjoined and a lateral extension appeared on peduncle element 3. The entire distal petaloid region is conjoined already at the node of Verscyllarida tax. nov. In modern slipper lobsters, Neoscyllarida tax nov., the distal region is no longer petaloid in shape but asymmetrical. The study also emphasizes that exceptionally preserved fossils need to be documented with optimal documentation techniques to obtain all available information.
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Affiliation(s)
- Joachim T Haug
- LMU Munich, Department of Biology II and GeoBio-Center, Großhaderner Str. 2, 82152 Martinsried-Planegg, Germany.
| | - Denis Audo
- Université de Rennes, EA 7316, 263 Avenue du General Leclerc CS 74205, 35042 Rennes Cedex, France.
| | - Sylvain Charbonnier
- Muséum National d'Histoire Naturelle, Paris UMR 7207 CR2P, CNRS-MNHN-UPMC, case postale 38, 57 rue Cuvier, 75231 Paris Cedex 05, France.
| | - Ferran Palero
- Institut Sophia Agrobiotech (INRA), 400 route des Chappes, BP 167, 06903 Sophia Antipolis Cedex, France.
| | - Gilles Petit
- Muséum National d'Histoire Naturelle, Paris UMR 7207 CR2P, CNRS-MNHN-UPMC, case postale 38, 57 rue Cuvier, 75231 Paris Cedex 05, France
| | | | - Carolin Haug
- LMU Munich, Department of Biology II and GeoBio-Center, Großhaderner Str. 2, 82152 Martinsried-Planegg, Germany.
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Haug JT, Haug C. "Intermetamorphic" developmental stages in 150 million-year-old achelatan lobsters--The case of the species tenera Oppel, 1862. ARTHROPOD STRUCTURE & DEVELOPMENT 2016; 45:108-121. [PMID: 26484593 DOI: 10.1016/j.asd.2015.10.001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2015] [Revised: 10/03/2015] [Accepted: 10/07/2015] [Indexed: 06/05/2023]
Abstract
We re-investigated the fossil species tenera Oppel, 1862, an achelatan lobster (traditionally named Palinurina tenera) found in 150 million years old limestones of southern Germany. All known specimens attributed to this species show a mixture of characters, which in modern forms occur either in larvae or post-larval juveniles. Hence these specimens provide insight into a phase in ontogeny that is no longer present in the developmental sequence of any modern achelatan lobster, as the latter ones skip this phase and replace it by a drastic metamorphosis. Comparable cases have been described earlier, yet did only comprise single stages or two successive ones at most. In the here described case four developmental stages are preserved. The reconstructed ontogeny of tenera therefore represents the currently best known sequence of an early achelatan lobster that covers this specific intermediate phase. The largest known stage most likely still represents an immature of a yet undiscovered adult. These findings support the interpretation that early achelatan lobsters developed in a more gradual ontogenetic sequence than modern forms. It furthermore demonstrates that it was even more gradual than anticipated previously.
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Affiliation(s)
- Joachim T Haug
- LMU Munich, Department of Biology II and GeoBio-Center, Großhaderner Str. 2, 82152 Martinsried-Planegg, Germany.
| | - Carolin Haug
- LMU Munich, Department of Biology II and GeoBio-Center, Großhaderner Str. 2, 82152 Martinsried-Planegg, Germany.
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Haug JT, Labandeira CC, Santiago-Blay JA, Haug C, Brown S. Life habits, hox genes, and affinities of a 311 million-year-old holometabolan larva. BMC Evol Biol 2015; 15:208. [PMID: 26416251 PMCID: PMC4587847 DOI: 10.1186/s12862-015-0428-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2015] [Accepted: 07/03/2015] [Indexed: 01/01/2023] Open
Abstract
Background Holometabolous insects are the most diverse, speciose and ubiquitous group of multicellular organisms in terrestrial and freshwater ecosystems. The enormous evolutionary and ecological success of Holometabola has been attributed to their unique postembryonic life phases in which nonreproductive and wingless larvae differ significantly in morphology and life habits from their reproductive and mostly winged adults, separated by a resting stage, the pupa. Little is known of the evolutionary developmental mechanisms that produced the holometabolous larval condition and their Paleozoic origin based on fossils and phylogeny. Results We provide a detailed anatomic description of a 311 million-year-old specimen, the oldest known holometabolous larva, from the Mazon Creek deposits of Illinois, U.S.A. The head is ovoidal, downwardly oriented, broadly attached to the anterior thorax, and bears possible simple eyes and antennae with insertions encircled by molting sutures; other sutures are present but often indistinct. Mouthparts are generalized, consisting of five recognizable segments: a clypeo-labral complex, mandibles, possible hypopharynx, a maxilla bearing indistinct palp-like appendages, and labium. Distinctive mandibles are robust, triangular, and dicondylic. The thorax is delineated into three, nonoverlapping regions of distinctive surface texture, each with legs of seven elements, the terminal-most bearing paired claws. The abdomen has ten segments deployed in register with overlapping tergites; the penultimate segment bears a paired, cercus-like structure. The anterior eight segments bear clawless leglets more diminutive than the thoracic legs in length and cross-sectional diameter, and inserted more ventrolaterally than ventrally on the abdominal sidewall. Conclusions Srokalarva berthei occurred in an evolutionary developmental context likely responsible for the early macroevolutionary success of holometabolous insects. Srokalarva berthei bore head and prothoracic structures, leglet series on successive abdominal segments – in addition to comparable features on a second taxon eight million-years-younger – that indicates Hox-gene regulation of segmental and appendage patterning among earliest Holometabola. Srokalarva berthei body features suggest a caterpillar-like body plan and head structures indicating herbivory consistent with known, contemporaneous insect feeding damage on seed plants. Taxonomic resolution places Srokalarva berthei as an extinct lineage, apparently possessing features closer to neuropteroid than other holometabolous lineages. Electronic supplementary material The online version of this article (doi:10.1186/s12862-015-0428-8) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Joachim T Haug
- Ludwig Maximilians University Munich, Biocenter - Department of Biology II and GeoBio-Center, Großhaderner Str. 2, Planegg-Martinsried, 82152, Germany
| | - Conrad C Labandeira
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington DC, 20013, USA. .,Department of Entomology, University of Maryland, College Park, MD, 20742, USA. .,College of Life Sciences, Capital Normal University, Beijing, 100048, China.
| | - Jorge A Santiago-Blay
- Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington DC, 20013, USA.,Department of Crop and Agroenvironmental Sciences, University of Puerto Rico, Mayagüez, PR, 00681, USA
| | - Carolin Haug
- Ludwig Maximilians University Munich, Biocenter - Department of Biology II and GeoBio-Center, Großhaderner Str. 2, Planegg-Martinsried, 82152, Germany
| | - Susan Brown
- Division of Biology, Kansas State University, Manhattan, KS, 66502, USA
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Park TYS, Kihm JH. Post-embryonic development of the Early Ordovician (ca. 480 Ma) trilobiteApatokephalus latilimbatusPeng, 1990 and the evolution of metamorphosis. Evol Dev 2015; 17:289-301. [DOI: 10.1111/ede.12138] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tae-Yoon S. Park
- Division of Polar Earth-System Sciences; Korea Polar Research Institute; Incheon 406-840 Korea
| | - Ji-Hoon Kihm
- Division of Polar Earth-System Sciences; Korea Polar Research Institute; Incheon 406-840 Korea
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Haug JT, Martin JW, Haug C. A 150-million-year-old crab larva and its implications for the early rise of brachyuran crabs. Nat Commun 2015; 6:6417. [PMID: 25751137 DOI: 10.1038/ncomms7417] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Accepted: 01/27/2015] [Indexed: 11/09/2022] Open
Abstract
True crabs (Brachyura) are the most successful group of decapod crustaceans. This success is most likely coupled to their life history, including two specialised larval forms, zoea and megalopa. The group is comparably young, starting to diversify only about 100 million years ago (mya), with a dramatic increase in species richness beginning approximately 50 mya. Early evolution of crabs is still very incompletely known. Here, we report a fossil crab larva, 150 mya, documented with up-to-date imaging techniques. It is only the second find of any fossil crab larva, but the first complete one, the first megalopa, and the oldest one (other fossil ca. 110 mya). Despite its age, the new fossil possesses a very modern morphology, being indistinguishable from many extant crab larvae. Hence, modern morphologies must have been present significantly earlier than formerly anticipated. We briefly discuss the impact of this find on our understanding of early crab evolution.
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Affiliation(s)
- Joachim T Haug
- Functional Morphology, Department of Biology II and GeoBio-Center, LMU Munich, Großhaderner Str. 2, 82152 Planegg-Martinsried, Germany
| | - Joel W Martin
- Research &Collections Branch, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, USA
| | - Carolin Haug
- Functional Morphology, Department of Biology II and GeoBio-Center, LMU Munich, Großhaderner Str. 2, 82152 Planegg-Martinsried, Germany
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