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Lv W, Liao H, Wang X, Yu S, Peng Y, Li X, Fu P, Yuan H, Chen Y. A machine learning-based assistant tool for early frailty screening of patients receiving maintenance hemodialysis. Int Urol Nephrol 2024; 56:223-235. [PMID: 37227677 DOI: 10.1007/s11255-023-03640-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Accepted: 05/13/2023] [Indexed: 05/26/2023]
Abstract
PURPOSE To develop an assistant tool based on machine learning for early frailty screening in patients receiving maintenance hemodialysis. METHODS This is a single-center retrospective study. 141 participants' basic information, scale results and laboratory findings were collected and the FRAIL scale was used to assess frailty. Then participants were divided into the frailty group (n = 84) and control group (n = 57). After feature selection, data split and oversampling, ten commonly used binary machine learning methods were performed and a voting classifier was developed. RESULTS The grade results of Clinical Frailty Scale, age, serum magnesium, lactate dehydrogenase, comorbidity and fast blood glucose were considered to be the best feature set for early frailty screening. After abandoning models with overfitting or poor performance, the voting classifier based on Support Vector Machine, Adaptive Boosting and Naive Bayes achieved a good screening performance (sensitivity: 68.24% ± 8.40%, specificity:72.50% ± 11.81%, F1 score: 72.55% ± 4.65%, AUC:78.38% ± 6.94%). CONCLUSION A simple and efficient early frailty screening assistant tool for patients receiving maintenance hemodialysis based on machine learning was developed. It can provide assistance on frailty, especially pre-frailty screening and decision-making tasks.
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Affiliation(s)
- Wenmei Lv
- Department of Nephrology, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu, 610041, Sichuan, China
| | - Hualong Liao
- Department of Applied Mechanics, College of Architecture and Environment, Sichuan University, Chengdu, 610065, Sichuan, China
| | - Xue Wang
- Department of Nephrology, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu, 610041, Sichuan, China
| | - Shaobin Yu
- National Clinical Research Center for Geriatrics, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Yuan Peng
- Department of Nephrology, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu, 610041, Sichuan, China
| | - Xianghong Li
- Department of Nephrology, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu, 610041, Sichuan, China
| | - Ping Fu
- Department of Nephrology, Kidney Research Institute, West China Hospital of Sichuan University, Chengdu, 610041, Sichuan, China
| | - Huaihong Yuan
- Department of Nephrology, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu, 610041, Sichuan, China.
| | - Yu Chen
- Department of Applied Mechanics, College of Architecture and Environment, Sichuan University, Chengdu, 610065, Sichuan, China.
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Song Y, Chang S, Tian J, Pan W, Feng L, Ji H. A Comprehensive Comparative Analysis of Deep Learning Based Feature Representations for Molecular Taste Prediction. Foods 2023; 12:3386. [PMID: 37761095 PMCID: PMC10529232 DOI: 10.3390/foods12183386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 08/30/2023] [Accepted: 09/01/2023] [Indexed: 09/29/2023] Open
Abstract
Taste determination in small molecules is critical in food chemistry but traditional experimental methods can be time-consuming. Consequently, computational techniques have emerged as valuable tools for this task. In this study, we explore taste prediction using various molecular feature representations and assess the performance of different machine learning algorithms on a dataset comprising 2601 molecules. The results reveal that GNN-based models outperform other approaches in taste prediction. Moreover, consensus models that combine diverse molecular representations demonstrate improved performance. Among these, the molecular fingerprints + GNN consensus model emerges as the top performer, highlighting the complementary strengths of GNNs and molecular fingerprints. These findings have significant implications for food chemistry research and related fields. By leveraging these computational approaches, taste prediction can be expedited, leading to advancements in understanding the relationship between molecular structure and taste perception in various food components and related compounds.
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Affiliation(s)
- Yu Song
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China;
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Shenzhen 518120, China
- Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Sihao Chang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Shenzhen 518120, China
- Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Jing Tian
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Shenzhen 518120, China
- Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Weihua Pan
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Shenzhen 518120, China
- Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
| | - Lu Feng
- Zhengzhou Research Base, State Key Laboratory of Cotton Biology, School of Agricultural Sciences, Zhengzhou University, Zhengzhou 450001, China;
| | - Hongchao Ji
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Shenzhen 518120, China
- Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China
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Alighaleh P, Pakdel R, Ghanei Ghooshkhaneh N, Einafshar S, Rohani A, Saeidirad MH. Detection and Classification of Saffron Adulterants by Vis-Nir Imaging, Chemical Analysis, and Soft Computing. Foods 2023; 12:foods12112192. [PMID: 37297436 DOI: 10.3390/foods12112192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2023] [Revised: 04/10/2023] [Accepted: 04/15/2023] [Indexed: 06/12/2023] Open
Abstract
Saffron (Crocus sativus L.) is the most expensive spice in the world, known for its unique aroma and coloring in the food industry. Hence, its high price is frequently adulterated. In the current study, a variety of soft computing methods, including classifiers (i.e., RBF, MLP, KNN, SVM, SOM, and LVQ), were employed to classify four samples of fake saffron (dyed citrus blossom, safflower, dyed fibers, and mixed stigma with stamens) and three samples of genuine saffron (dried by different methods). RGB and spectral images (near-infrared and red bands) were captured from prepared samples for analysis. The amount of crocin, safranal, and picrocrocin were measured chemically to compare the images' analysis results. The comparison results of the classifiers indicated that KNN could classify RGB and NIR images of samples in the training phase with 100% accuracy. However, KNN's accuracy for different samples in the test phase was between 71.31% and 88.10%. The RBF neural network achieved the highest accuracy in training, test, and total phases. The accuracy of 99.52% and 94.74% was obtained using the features extracted from RGB and spectral images, respectively. So, soft computing models are helpful tools for detecting and classifying fake and genuine saffron based on RGB and spectral images.
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Affiliation(s)
- Pejman Alighaleh
- Department of Biosystems Engineering, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad P.O. Box 9177948974, Iran
| | - Reyhaneh Pakdel
- Department of Biosystems Engineering, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad P.O. Box 9177948974, Iran
| | - Narges Ghanei Ghooshkhaneh
- Department of Biosystems Engineering, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad P.O. Box 9177948974, Iran
| | - Soodabeh Einafshar
- Department of Agricultural Engineering Institute, Khorasan Razavi Agricultural and Natural Resources Research and Education Center, AREEO, Mashhad P.O. Box 9177335488, Iran
| | - Abbas Rohani
- Department of Biosystems Engineering, Faculty of Agriculture, Ferdowsi University of Mashhad, Mashhad P.O. Box 9177948974, Iran
| | - Mohammad Hossein Saeidirad
- Department of Agricultural Engineering Institute, Khorasan Razavi Agricultural and Natural Resources Research and Education Center, AREEO, Mashhad P.O. Box 9177335488, Iran
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Pourramezan MR, Rohani A, Keramat Siavash N, Zarein M. Evaluation of lubricant condition and engine health based on soft computing methods. Neural Comput Appl 2022. [DOI: 10.1007/s00521-021-06688-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Canbek G, Taskaya Temizel T, Sagiroglu S. BenchMetrics: a systematic benchmarking method for binary classification performance metrics. Neural Comput Appl 2021. [DOI: 10.1007/s00521-021-06103-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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