1
|
Kavitha P, Ayyappan G, Jayagopal P, Mathivanan SK, Mallik S, Al-Rasheed A, Alqahtani MS, Soufiene BO. Detection for melanoma skin cancer through ACCF, BPPF, and CLF techniques with machine learning approach. BMC Bioinformatics 2023; 24:458. [PMID: 38053030 DOI: 10.1186/s12859-023-05584-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2023] [Accepted: 11/27/2023] [Indexed: 12/07/2023] Open
Abstract
Intense sun exposure is a major risk factor for the development of melanoma, an abnormal proliferation of skin cells. Yet, this more prevalent type of skin cancer can also develop in less-exposed areas, such as those that are shaded. Melanoma is the sixth most common type of skin cancer. In recent years, computer-based methods for imaging and analyzing biological systems have made considerable strides. This work investigates the use of advanced machine learning methods, specifically ensemble models with Auto Correlogram Methods, Binary Pyramid Pattern Filter, and Color Layout Filter, to enhance the detection accuracy of Melanoma skin cancer. These results suggest that the Color Layout Filter model of the Attribute Selection Classifier provides the best overall performance. Statistics for ROC, PRC, Kappa, F-Measure, and Matthews Correlation Coefficient were as follows: 90.96% accuracy, 0.91 precision, 0.91 recall, 0.95 ROC, 0.87 PRC, 0.87 Kappa, 0.91 F-Measure, and 0.82 Matthews Correlation Coefficient. In addition, its margins of error are the smallest. The research found that the Attribute Selection Classifier performed well when used in conjunction with the Color Layout Filter to improve image quality.
Collapse
Affiliation(s)
- P Kavitha
- Department of Artificial Intelligence and Data Science, Panimalar Engineering College, Chennai, India
| | - G Ayyappan
- Department of Information Technology, Prince Shri Venkateshwara Padmavathy Engineering College, Chennai, India
| | - Prabhu Jayagopal
- School of Computer Science Engineering and Information Systems, Vellore Institute of Technology, Vellore, Tamil Nadu, 632014, India
| | - Sandeep Kumar Mathivanan
- School of Computing Science and Engineering, Galgotias University, Greater Noida, Uttar Pradesh, 203201, India
| | - Saurav Mallik
- Department of Environmental Health, Harvard T H Chan School of Public Health, Boston, MA, 02115, USA
- Department of Pharmacology and Toxicology, The University of Arizona, Tucson, AZ, 85721, USA
| | - Amal Al-Rasheed
- Department of Information Systems, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, P.O. Box 84428, 11671, Riyadh, Saudi Arabia
| | - Mohammed S Alqahtani
- Radiological Sciences Department, College of Applied Medical Sciences, King Khalid University, 61421, Abha, Saudi Arabia
- BioImaging Unit, Space Research Centre, University of Leicester, Michael Atiyah Building, Leicester, LE1 7RH, UK
| | - Ben Othman Soufiene
- PRINCE Laboratory Research, ISITcom, Hammam Sousse, University of Sousse, Sousse, Tunisia.
| |
Collapse
|
2
|
Cheng Y, Xia Y, Wang X. Bayesian multitask learning for medicine recommendation based on online patient reviews. Bioinformatics 2023; 39:btad491. [PMID: 37551956 PMCID: PMC10425196 DOI: 10.1093/bioinformatics/btad491] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 05/21/2023] [Accepted: 08/06/2023] [Indexed: 08/09/2023] Open
Abstract
MOTIVATION We propose a drug recommendation model that integrates information from both structured data (patient demographic information) and unstructured texts (patient reviews). It is based on multitask learning to predict review ratings of several satisfaction-related measures for a given medicine, where related tasks can learn from each other for prediction. The learned models can then be applied to new patients for drug recommendation. This is fundamentally different from most recommender systems in e-commerce, which do not work well for new customers (referred to as the cold-start problem). To extract information from review texts, we employ both topic modeling and sentiment analysis. We further incorporate variable selection into the model via Bayesian LASSO, which aims to filter out irrelevant features. To our best knowledge, this is the first Bayesian multitask learning method for ordinal responses. We are also the first to apply multitask learning to medicine recommendation. The sample code and data are made available at GitHub: https://github.com/thrushcyc-github/BMull. RESULTS We evaluate the proposed method on two sets of drug reviews involving 17 depression/high blood pressure-related drugs. Overall, our method performs better than existing benchmark methods in terms of accuracy and AUC (area under the receiver operating characteristic curve). It is effective even with a small sample size and only a few available features, and more robust to possible noninformative covariates. Due to our model explainability, insights generated from our model may work as a useful reference for doctors. In practice, however, a final decision should be carefully made by combining the information from the proposed recommender with doctors' domain knowledge and past experience. AVAILABILITY AND IMPLEMENTATION The sample code and data are publicly available at GitHub: https://github.com/thrushcyc-github/BMull.
Collapse
Affiliation(s)
- Yichen Cheng
- Institute for Insight, Robinson College of Business, Georgia State University, Atlanta, GA 30303, United States
| | - Yusen Xia
- Institute for Insight, Robinson College of Business, Georgia State University, Atlanta, GA 30303, United States
| | - Xinlei Wang
- Department of Mathematics, University of Texas at Arlington, Arlington, TX 76019, United States
- Center for Data Science Research and Education, College of Science, University of Texas at Arlington, Arlington, TX 76019, United States
| |
Collapse
|
3
|
Palanivinayagam A, Kumar VV, Mahesh TR, Singh KK, Singh A. Machine Learning-Based COVID-19 Classification Using E-Adopted CT Scans. INTERNATIONAL JOURNAL OF E-ADOPTION 2022. [DOI: 10.4018/ijea.310001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
In recent years, several machine learning models were successfully deployed in various fields. However, a huge quantity of data is required for training good machine learning. Data are distributivity stored across multiple sources and centralizing those data leads to privacy and security issues. To solve this problem, the proposed federated-based method works by exchanging the parameters of three locally trained machine learning models without compromising privacy. Each machine learning model uses the e-adoption of CT scans for improving their training knowledge. The CT scans are electronically transferred between various medical centers. Proper care is taken to prevent identify loss from the e-adopted data. To normalize the parameters, a novel weighting scheme is also exchanged along with the parameters. Thus, the global model is trained with more heterogeneous samples to increase performance. Based on the experiment, the proposed algorithm has obtained 89% of accuracy, which is 32% more than the existing machine learning models.
Collapse
|
4
|
Analysis on COVID-19 Infection Spread Rate during Relief Schemes Using Graph Theory and Deep Learning. COMPUTATIONAL AND MATHEMATICAL METHODS IN MEDICINE 2022; 2022:8131193. [PMID: 35991144 PMCID: PMC9391156 DOI: 10.1155/2022/8131193] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 07/28/2022] [Indexed: 12/04/2022]
Abstract
The novel coronavirus 2019 (COVID-19) disease is a pandemic which affects thousands of people throughout the world. It has rapidly spread throughout India since the first case in India was reported on 30 January 2020. The official report says that totally 4, 11,773 cases are positive, 2, 28,307 recovered, and the country reported 12,948 deaths as of 21 June 2020. Vaccination is the only way to prevent the spreading of COVID-19 disease. Due to various reasons, there is vaccine hesitancy across many people. Hence, the Indian government has the solution to avoid the spread of the disease by instructing their citizens to maintain social distancing, wearing masks, avoiding crowds, and cleaning your hands. Moreover, lots of poverty cases are reported due to social distancing, and hence, both the center government and the respective state governments decide to issue relief funds to all its citizens. The government is unable to maintain social distancing during the relief schemes as the population is huge and available support staffs are less. In this paper, the proposed algorithm makes use of graph theory to schedule the timing of the relief funds so that with the available support staff, the government would able to implement its relief scheme while maintaining social distancing. Furthermore, we have used LSTM deep learning model to predict the spread rate and analyze the daily positive COVID cases.
Collapse
|