A deep learning classifier for sentence classification in biomedical and computer science abstracts

DDFC: deep learning approach for deep feature extraction and classification of brain tumors using magnetic resonance imaging in E-healthcare system

This research explores the use of gated recurrent units (GRUs) for automated brain tumor detection using MRI data. The GRU model captures sequential patterns and considers spatial information within individual MRI images and the temporal evolution of lesion characteristics. The proposed approach improves the accuracy of tumor detection using MRI images. The model's performance is benchmarked against conventional CNNs and other recurrent architectures. The research addresses interpretability concerns by employing attention mechanisms that highlight salient features contributing to the model's decisions. The proposed model attention-gated recurrent units (A-GRU) results show promising results, indicating that the proposed model surpasses the state-of-the-art models in terms of accuracy and obtained 99.32% accuracy. Due to the high predictive capability of the proposed model, we recommend it for the effective diagnosis of Brain tumors in the E-healthcare system.

Temporal trends of land-use favourability for the strongly declining little bustard: assessing the role of protected areas

The little bustard (Tetrax tetrax) is a steppe bird strongly and negatively influenced by agricultural intensification in Europe. Here, we use the little bustard as a model species to examine how favourability (relative occurrence likelihood of a species based on environmental characteristics, such as habitat availability) varies regionally with degree of protection in north-western Spain. The Natura2000 network is one of the main biodiversity conservation tools of the European Union, aiming to protect areas hosting species of conservation concern from unfavourable land-use changes. The network covers many landscapes across the continent, including farmland. Additionally, we examine the relationship between trends in land-use favourability and little bustard population trends over a decade in the Nature Reserve of Lagunas de Villafáfila, a protected area also in the Natura2000 network where active and intense management focused on steppe bird conservation is carried out. Favourability was much greater in Villafáfila than in both protected areas with lower degree of protection and in non-protected areas. Land-use favourability increased slightly between 2011 and 2020 both in and out of protected areas, whereas little bustard populations declined sharply in that period, even in Villafáfila. Spatial variations in little bustard abundance within Villafáfila depended on social attraction (increasing with the number of neighbouring males) but not significantly on small-scale variations in land-use favourability. These results suggest that land-use management in Natura2000 areas needs to be more conservation-focused, favouring natural and seminatural habitats and traditional farming practices to improve land-use favourability for little bustards and other steppe birds. Additional factors, such as field-level agricultural management or social interaction variables that may cause an Allee effect, should be incorporated in little bustard favourability models to improve their use in conservation planning.

A model for the identification of the functional structures of unstructured abstracts in the social sciences

Purpose

Reorganising unstructured academic abstracts according to a certain logical structure can help scholars not only extract valid information quickly but also facilitate the faceted search of academic literature. This study aims to build a high-performance model for identifying of the functional structures of unstructured abstracts in the social sciences.

Design/methodology/approach

This study first investigated the structuring of abstracts in academic articles in the field of social sciences, using large-scale statistical analyses. Then, the functional structures of sentences in the abstract in a corpus of more than 3.5 million abstracts were identified from sentence classification and sequence tagging by using several models based on either machine learning or a deep learning approach, and the results were compared.

Findings

The results demonstrate that the functional structures of sentences in abstracts in social science manuscripts include the background, purpose, methods, results and conclusions. The experimental results show that the bidirectional encoder representation from transformers exhibited the best performance, the overall F1 score of which was 86.23%.

Originality/value

The data set of annotated social science abstract is generated and corresponding models are trained on the basis of the data set, both of which are available on Github (https://github.com/Academic-Abstract-Knowledge-Mining/SSCI_Abstract_Structures_Identification). Based on the optimised model, a Web application for the identification of the functional structures of abstracts and their faceted search in social sciences was constructed to enable rapid and convenient reading, organisation and fine-grained retrieval of academic abstracts.

The design, construction and evaluation of annotated Arabic cyberbullying corpus

Cyberbullying (CB) is classified as one of the severe misconducts on social media. Many CB detection systems have been developed for many natural languages to face this phenomenon. However, Arabic is one of the under-resourced languages suffering from the lack of quality datasets in many computational research areas. This paper discusses the design, construction, and evaluation of a multi-dialect, annotated Arabic Cyberbullying Corpus (ArCybC), a valuable resource for Arabic CB detection and motivation for future research directions in Arabic Natural Language Processing (NLP). The study describes the phases of ArCybC compilation. By way of illustration, it explores the corpus to discover strategies used in rendering Arabic CB tweets pulled from four Twitter groups, including gaming, sports, news, and celebrities. Based on thorough analysis, we discovered that these groups were the most susceptible to harassment and cyberbullying. The collected tweets were filtered based on a compiled harassment lexicon, which contains a list of multi-dialectical profane words in Arabic compiled from four categories: sexual, racial, physical appearance, and intelligence. To annotate ArCybC, we asked five annotators to classify 4,505 tweets into two classes manually: Offensive/non-Offensive and CB/non-CB. We conducted a rigorous comparison of different machine learning approaches applied on ArCybC to detect Arabic CB using two language models: bag-of-words (BoW) and word embedding. The experiments showed that Support Vector Machine (SVM) with word embedding achieved an accuracy rate of 86.3% and an F1-score rate of 85%. The main challenges encountered during the ArCybC construction were the scarcity of freely available Arabic CB texts and the deficiency of annotating the texts.

Classification of Ear Imagery Database using Bayesian Optimization based on CNN-LSTM Architecture

The external and middle ear conditions are diagnosed using a digital otoscope. The clinical diagnosis of ear conditions is suffered from restricted accuracy due to the increased dependency on otolaryngologist expertise, patient complaint, blurring of the otoscopic images, and complexity of lesions definition. There is a high requirement for improved diagnosis algorithms based on otoscopic image processing. This paper presented an ear diagnosis approach based on a convolutional neural network (CNN) as feature extraction and long short-term memory (LSTM) as a classifier algorithm. However, the suggested LSTM model accuracy may be decreased by the omission of a hyperparameter tuning process. Therefore, Bayesian optimization is used for selecting the hyperparameters to improve the results of the LSTM network to obtain a good classification. This study is based on an ear imagery database that consists of four categories: normal, myringosclerosis, earwax plug, and chronic otitis media (COM). This study used 880 otoscopic images divided into 792 training images and 88 testing images to evaluate the approach performance. In this paper, the evaluation metrics of ear condition classification are based on a percentage of accuracy, sensitivity, specificity, and positive predictive value (PPV). The findings yielded a classification accuracy of 100%, a sensitivity of 100%, a specificity of 100%, and a PPV of 100% for the testing database. Finally, the proposed approach shows how to find the best hyperparameters concerning the Bayesian optimization for reliable diagnosis of ear conditions under the consideration of LSTM architecture. This approach demonstrates that CNN-LSTM has higher performance and lower training time than CNN, which has not been used in previous studies for classifying ear diseases. Consequently, the usefulness and reliability of the proposed approach will create an automatic tool for improving the classification and prediction of various ear pathologies.

Analysing the requirements for an Open Research Knowledge Graph: use cases, quality requirements, and construction strategies

Current science communication has a number of drawbacks and bottlenecks which have been subject of discussion lately: Among others, the rising number of published articles makes it nearly impossible to get a full overview of the state of the art in a certain field, or reproducibility is hampered by fixed-length, document-based publications which normally cannot cover all details of a research work. Recently, several initiatives have proposed knowledge graphs (KG) for organising scientific information as a solution to many of the current issues. The focus of these proposals is, however, usually restricted to very specific use cases. In this paper, we aim to transcend this limited perspective and present a comprehensive analysis of requirements for an Open Research Knowledge Graph (ORKG) by (a) collecting and reviewing daily core tasks of a scientist, (b) establishing their consequential requirements for a KG-based system, (c) identifying overlaps and specificities, and their coverage in current solutions. As a result, we map necessary and desirable requirements for successful KG-based science communication, derive implications, and outline possible solutions.

Deep learning in electron microscopy

Deep learning is transforming most areas of science and technology, including electron microscopy. This review paper offers a practical perspective aimed at developers with limited familiarity. For context, we review popular applications of deep learning in electron microscopy. Following, we discuss hardware and software needed to get started with deep learning and interface with electron microscopes. We then review neural network components, popular architectures, and their optimization. Finally, we discuss future directions of deep learning in electron microscopy.

Hardware implementation of radial-basis neural networks with Gaussian activation functions on FPGA

This article introduces a method for realizing the Gaussian activation function of radial-basis (RBF) neural networks with their hardware implementation on field-programmable gaits area (FPGAs). The results of modeling of the Gaussian function on FPGA chips of different families have been presented. RBF neural networks of various topologies have been synthesized and investigated. The hardware component implemented by this algorithm is an RBF neural network with four neurons of the latent layer and one neuron with a sigmoid activation function on an FPGA using 16-bit numbers with a fixed point, which took 1193 logic matrix gate (LUTs—LookUpTable). Each hidden layer neuron of the RBF network is designed on an FPGA as a separate computing unit. The speed as a total delay of the combination scheme of the block RBF network was 101.579 ns. The implementation of the Gaussian activation functions of the hidden layer of the RBF network occupies 106 LUTs, and the speed of the Gaussian activation functions is 29.33 ns. The absolute error is ± 0.005. The Spartan 3 family of chips for modeling has been used to get these results. Modeling on chips of other series has been also introduced in the article. RBF neural networks of various topologies have been synthesized and investigated. Hardware implementation of RBF neural networks with such speed allows them to be used in real-time control systems for high-speed objects.