1
|
Baranowska M, Behnke-Borowczyk J, Barzdajn W, Szmyt J, Korzeniewicz R, Łukowski A, Memišević-Hodžić M, Kartawik N, Kowalkowski W. Effects of nursery production methods on fungal community diversity within soil and roots of Abies alba Mill. Sci Rep 2023; 13:21284. [PMID: 38042872 PMCID: PMC10693611 DOI: 10.1038/s41598-023-48047-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 11/21/2023] [Indexed: 12/04/2023] Open
Abstract
The aim of this study was to elucidate how different nursery production methods influence the composition of and relationship between soil and root community levels of Abies alba. In the Międzylesie Forest District, we quantified the responses of samples of both community-level fine roots and surrounding soil to environmental changes evoked by various seedling production methods. Fungi levels were identified based on their ITS 1 region and 5.8 S rDNA component. Analysis was conducted using Illumina SBS technology, and the obtained sequences were compared with reference samples deposited in the UNITE. Chemical analysis of the soil was also performed. Different nursery production methods resulted in a strong decoupling in the responses of fungal community levels between soil and roots. Changes in growth conditions imposed by production methods were significant in determining species composition. We found differences in fungal communities among functional groups of samples. In the soil, the dominant species of mycorrhizal fungi were Tylospora asterophora, Amanita rubescens, and Russula ionochlora. Mycorrhizal fungi in roots included Tuber anniae, Thelephoraceae sp., and Acephala applanata. Specific soil substrate conditions significantly influenced fungal community composition, leading to an increase in abundance of mycorrhizal fungi, specifically T. anniae.
Collapse
Affiliation(s)
- Marlena Baranowska
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Jolanta Behnke-Borowczyk
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Władysław Barzdajn
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Janusz Szmyt
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Robert Korzeniewicz
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Adrian Łukowski
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Mirzeta Memišević-Hodžić
- Faculty of Forestry, University of Sarajevo, Zagrebačka 20, 71000, Sarajevo, Bosnia and Herzegovina
| | - Natalia Kartawik
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland
| | - Wojciech Kowalkowski
- Faculty of Forestry and Wood Technology, Poznań University of Life Sciences, Wojska Polskiego 71a, 60-625, Poznan, Poland.
| |
Collapse
|
2
|
Aranguren R, Voyron S, Ungaro F, Cañón J, Lumini E. Metabarcoding Reveals Impact of Different Land Uses on Fungal Diversity in the South-Eastern Region of Antioquia, Colombia. PLANTS (BASEL, SWITZERLAND) 2023; 12:1126. [PMID: 36903986 PMCID: PMC10005449 DOI: 10.3390/plants12051126] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/14/2023] [Revised: 02/20/2023] [Accepted: 02/28/2023] [Indexed: 06/18/2023]
Abstract
Changes in soil fungal communities caused by land use have not been sufficiently studied in South American Andosols, which are considered key food production areas. Since fungal communities play an important role in soil functionality, this study analysed 26 soil samples of Andosols collected from locations devoted to conservation, agriculture and mining activities in Antioquia, Colombia, to establish differences between fungal communities as indicators of soil biodiversity loss using Illumina MiSeq metabarcoding on nuclear ribosomal ITS2 region. A non-metric multidimensional scaling allowed to explore driver factors of changes in fungal communities, while the significance of these variations was assessed by PERMANOVA. Furthermore, the effect size of land use over relevant taxa was quantified. Our results suggest a good coverage of fungal diversity with a detection of 353,312 high-quality ITS2 sequences. We found strong correlations of Shannon and Fisher indexes with dissimilarities on fungal communities (r = 0.94). These correlations allow grouping soil samples according to land use. Variations in temperature, air humidity and organic matter content lead to changes in abundances of relevant orders (Wallemiales and Trichosporonales). The study highlights specific sensitivities of fungal biodiversity features in tropical Andosols, which may serve as a basis for robust assessments of soil quality in the region.
Collapse
Affiliation(s)
- Raul Aranguren
- GAIA Research Group, Universidad de Antioquia, Medellín 050010, Colombia
| | - Samuele Voyron
- Department of Life Sciences and Systems Biology, University of Turin, 10124 Turin, Italy
- Institute for Sustainable Plant Protection (IPSP), National Research Council (CNR), 10125 Turin, Italy
| | - Fabrizio Ungaro
- Institute for Bio-Economy (IBE), National Research Council (CNR), 50018 Florence, Italy
| | - Julio Cañón
- GAIA Research Group, Universidad de Antioquia, Medellín 050010, Colombia
| | - Erica Lumini
- Institute for Sustainable Plant Protection (IPSP), National Research Council (CNR), 10125 Turin, Italy
| |
Collapse
|
3
|
Carrell AA, Hicks BB, Sidelinger E, Johnston ER, Jawdy SS, Clark MM, Klingeman DM, Cregger MA. Nitrogen addition alters soil fungal communities, but root fungal communities are resistant to change. Front Microbiol 2023; 13:1033631. [PMID: 36762095 PMCID: PMC9905728 DOI: 10.3389/fmicb.2022.1033631] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 12/16/2022] [Indexed: 01/26/2023] Open
Abstract
Plants are colonized by numerous microorganisms serving important symbiotic functions that are vital to plant growth and success. Understanding and harnessing these interactions will be useful in both managed and natural ecosystems faced with global change, but it is still unclear how variation in environmental conditions and soils influence the trajectory of these interactions. In this study, we examine how nitrogen addition alters plant-fungal interactions within two species of Populus - Populus deltoides and P. trichocarpa. In this experiment, we manipulated plant host, starting soil (native vs. away for each tree species), and nitrogen addition in a fully factorial replicated design. After ~10 weeks of growth, we destructively harvested the plants and characterized plant growth factors and the soil and root endosphere fungal communities using targeted amplicon sequencing of the ITS2 gene region. Overall, we found nitrogen addition altered plant growth factors, e.g., plant height, chlorophyll density, and plant N content. Interestingly, nitrogen addition resulted in a lower fungal alpha diversity in soils but not plant roots. Further, there was an interactive effect of tree species, soil origin, and nitrogen addition on soil fungal community composition. Starting soils collected from Oregon and West Virginia were dominated by the ectomycorrhizal fungi Inocybe (55.8% relative abundance), but interestingly when P. deltoides was grown in its native West Virginia soil, the roots selected for a high abundance of the arbuscular mycorrhizal fungi, Rhizophagus. These results highlight the importance of soil origin and plant species on establishing plant-fungal interactions.
Collapse
Affiliation(s)
- Alyssa A. Carrell
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Brittany B. Hicks
- Department of Civil and Environmental Engineering, University of Michigan, Ann Arbor, MI, United States
| | - Emilie Sidelinger
- Department of Environmental Engineering and Earth Sciences, Clemson University, Clemson, SC, United States
| | - Eric R. Johnston
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Sara S. Jawdy
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Miranda M. Clark
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Dawn M. Klingeman
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States
| | - Melissa A. Cregger
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, United States,*Correspondence: Melissa A. Cregger ✉
| |
Collapse
|
4
|
Baeza-Guzmán Y, Medel-Ortiz R, Trejo Aguilar D, Garibay-Orijel R. Medium-distance soil foragers dominate the Pinus hartwegii ectomycorrhizal community at the 3900 m Neotropical treeline. Symbiosis 2022. [DOI: 10.1007/s13199-022-00869-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
5
|
Unipartite and bipartite mycorrhizal networks of Abies religiosa forests: Incorporating network theory into applied ecology of conifer species and forest management. ECOLOGICAL COMPLEXITY 2022. [DOI: 10.1016/j.ecocom.2022.101002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
6
|
Páez CP, Healy RA, Guevara G, Orijel RG, Castellano MA, Cázares E, Trappe JM. Greetings from belowground: two new species of truffles in the genus Pachyphlodes (Pezizaceae, Pezizales) from México. MycoKeys 2021; 82:159-171. [PMID: 34475801 PMCID: PMC8384826 DOI: 10.3897/mycokeys.82.67685] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2021] [Accepted: 06/15/2021] [Indexed: 11/12/2022] Open
Abstract
Pachyphlodes is a lineage of ectomycorrhizal, hypogeous, sequestrate ascomycete fungi native to temperate and subtropical forests in the Northern Hemisphere. Pachyphlodes species form ectomycorrhizae mainly with Fagales hosts. Here we describe two new species of Pachyphlodes, P.brunnea, and P.coalescens, based on morphological and phylogenetic analysis. Pachyphlodesbrunnea is distributed in the states of Tamaulipas and Nuevo León in northern México, occurring with Quercus and Juglans species. It is characterized by its dark brown peridium, white gleba, and spores with capitate columns. Pachyphlodescoalescens is distributed in the states of Michoacán and Tlaxcala in central and southwestern México co-occurring with Quercus and is distinguished by its reddish-brown peridium, light yellow gleba, and spore ornamentation. Both species, along with P.marronina, constitute the Marronina clade. This clade contains North American species characterized by a brown peridium and spores ornamented with capitate spines to coalesced spine tips that form a partial perispore.
Collapse
Affiliation(s)
- Carolina Piña Páez
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria Delegación Coyoacán, C.P. 04510, Ciudad de México, México.,Department of Botany and Plant Pathology, Oregon State University, Corvallis, 97331, Oregon, USA
| | - Rosanne A Healy
- Department of Plant Pathology, University of Florida. 2550 Hull Rd, Gainesville, 32607, Florida, USA
| | - Gonzalo Guevara
- Instituto Tecnológico de Ciudad Victoria. Av. Portes Gil 1301 Poniente, C.P. 87010 Ciudad Victoria, Tamaulipas, México
| | - Roberto Garibay Orijel
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria Delegación Coyoacán, C.P. 04510, Ciudad de México, México
| | - Michael A Castellano
- USDA Forest Service, Northern Research Station, 3200 Jefferson Way, Corvallis, 97331, Oregon, USA
| | - Efrén Cázares
- Department of Forest Ecosystems and Society, Oregon State University, Corvallis, 97331, Oregon, USA
| | - James M Trappe
- USDA Forest Service, Northern Research Station, 3200 Jefferson Way, Corvallis, 97331, Oregon, USA
| |
Collapse
|
7
|
Rodríguez-Gutiérrez I, Garibay-Orijel R, Santiago-Morales B, Lindig-Cisneros R. Comparación entre las abundancias de esporomas y ectomicorrizas del género Laccaria en Ixtlán de Juárez, Oaxaca. REV MEX BIODIVERS 2020. [DOI: 10.22201/ib.20078706e.2020.91.3340] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
|
8
|
Páez CP, Bonito GM, Guevara-Guerrero G, Castellano MA, Garibay-Orijel R, Trappe JM, Rámirez RP. Description and distribution of Tuberincognitum sp. nov. and Tuberanniae in the Transmexican Volcanic Belt. MycoKeys 2018:17-27. [PMID: 30344441 PMCID: PMC6194138 DOI: 10.3897/mycokeys.41.28130] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Accepted: 09/12/2018] [Indexed: 11/12/2022] Open
Abstract
The genus Tuber is a lineage of diverse ectomycorrhizal, hypogeous, sequestrate ascomycete fungi that are native to temperate forests in the Northern Hemisphere. Recently, many new species of Tuber have been described in North America and Asia, based on morphological characteristics and molecular data. Here we describe and illustrate a new species, Tuberincognitum, based upon phylogenetic analysis and morphological description. We also present a new record for Tuberanniae in México. These two Tuber species are distributed in the Transmexican Volcanic Belt in the states of México, Michoacán, Guanajuato, Querétaro and Tlaxcala at altitudes between 2,000 and 3,200 meters. These species are associated with Pinus (T.anniae) and Quercus forests (T.incognitum).
Collapse
Affiliation(s)
- Carolina Piña Páez
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria Delegación Coyoacán, A.P. 70-233, C.P. 04510 Ciudad de México, México
| | - Gregory M Bonito
- Department of Plant, Soil and Microbial Sciences, Michigan State University, East Lansing, MI 48824, USA
| | - Gonzalo Guevara-Guerrero
- Instituto Tecnológico de Ciudad Victoria. Av. Portes Gil 1301 Poniente, 87010 Ciudad Victoria, Tamaulipas, México
| | - Michael A Castellano
- US Department of Agriculture, Forest Service, Northern Research Station, Forestry Sciences Laboratory, Corvallis, Oregon, 97331, USA
| | - Roberto Garibay-Orijel
- Instituto de Biología, Universidad Nacional Autónoma de México, Tercer Circuito s/n, Ciudad Universitaria Delegación Coyoacán, A.P. 70-233, C.P. 04510 Ciudad de México, México
| | - James M Trappe
- US Department of Agriculture, Forest Service, Northern Research Station, Forestry Sciences Laboratory, Corvallis, Oregon, 97331, USA
| | - Rafael Peña Rámirez
- Instituto Tecnológico de Ciudad Victoria. Av. Portes Gil 1301 Poniente, 87010 Ciudad Victoria, Tamaulipas, México
| |
Collapse
|