Aptamer-based fluorescent platform for ultrasensitive adenosine detection utilizing Fe3O4 magnetic nanoparticles and silver nanoparticles

A fluorescent probe for protein tyrosine kinase 7 detection in serum and cell imaging

Tyrosine protein kinase 7 (PTK7) is overexpressed in breast cancer, which is considered as a cancer marker for breast cancer diagnosis. Therefore, a simple fluorescent probe for PTK7 detection and cell imaging was developed. In the developed probe, Fe₃O₄ magnetic nanoparticles were used as the fluorescent separator, and the fluorescence of carbon dots were used as the detection signal. The probe was worked by control the configurations of the aptamer of PTK7, the aptamer would be open chains by recognition of PTK7, which bond with carbon dots and show fluorescent signal. Based on the remarkably high affinity and selectivity of aptamer for PTK7, the excellent fluorescence property of carbon dots and the outstanding magnetism of Fe₃O₄ magnetic nanoparticles, the developed probe showed satisfied results for PTK7 detection in serum and MCF-7 cell imaging. The probe detected PTK7 in the range of 0.2-200 ng mL^-1 with a detection limit of 0.0347 ng mL^-1, and successfully imaged the cancer cell expressed PTK7. The results indicate that the nano-fluorescent probe has great potential for clinical applications.

Near-infrared carbon dots for cell imaging and detecting ciprofloxacin by label-free fluorescence sensor based on aptamer

A label-free fluorescence sensor based on near-infrared carbon dots (NIR-CDs) and aptamer is described for the highly sensitive and selective detection of ciprofloxacin (CIP). NIR-CDs were synthesized from polyethyleneimine and reduced glutathione by one-step hydrothermal method. The electrostatic interaction between the positively charged carbon dots and the negatively charged aptamer resulted in fluorescence quenching. After the addition of CIP, the specific binding between CIP aptamer and CIP was stronger, resulting in fluorescence recovery. Under the optimal experimental conditions, the recovered fluorescence intensity has a linear relationship with the concentration of CIP in the range 0.5-800 ng/mL, and the detection limit is 0.167 ng/mL. The prepared carbon dots have excellent optical properties and biocompatibility, and due to their emission characteristics in the near-infrared window, they can be used for biological imaging, which has also been confirmed in the experiment. The feasibility of the label-free fluorescence sensor for the detection of CIP is also proved by confocal fluorescence imaging. The detection results of CIP determination in milk by this sensor are satisfactory, indicating that the developed sensor has great application potential.

Empirical Expression of AC Susceptibility of Magnetic Nanoparticles and Potential Application in Biosensing

Magnetic nanoparticles (MNPs) have been widely studied for use in biomedical and industrial applications. The frequency dependence of the magnetization of magnetic nanoparticles is analyzed for different AC excitation fields. We employ a Fokker-Planck equation, which accurately describes AC magnetization dynamics and analyze the difference in AC susceptibility between Fokker-Planck equation and Debye model. Based on these results we proposed a simple, empirical AC susceptibility model. Simulation and experimental results showed that the proposed empirical model accurately describes AC susceptibility, and the AC susceptibility constructed with the proposed empirical equation based on Debye model agrees well with the measured results. Therefore, we can utilize the proposed empirical model in biomedical applications, such as the estimation of the hydrodynamic size and temperature, which is expected to apply to biologicals assays and hyperthermia.

Aptamer Turn-On SERS/RRS/Fluorescence Tri-mode Platform for Ultra-trace Urea Determination Using Fe/N-Doped Carbon Dots

Sensitive and selective methods for the determination of urea in samples such as dairy products are important for quality control and health applications. Using ammonium ferric citrate as a precursor, Fe/N-codoped carbon dots (CD_FeN) were prepared by a hydrothermal procedure and characterized in detail. CD_FeN strongly catalyzes the oxidation of 3,3′,5,5′-tetramethylbenzidine (TMB) by H₂O₂ to turn on an indicator molecular reaction, forming an oxidized tetramethylbenzidine (TMB_ox) probe with surface-enhanced Raman scattering, resonance Rayleigh scattering, and fluorescence (SERS, RRS, and FL) signals at 1,598 cm⁻¹, 370 nm, and 405 nm, respectively. The urea aptamer (Apt) can turn off the indicator reaction to reduce the tri-signals, and the addition of urea turns on the indicator reaction to linearly enhance the SERS/RRS/FL intensity. Thus, a novel Apt turn-on tri-mode method was developed for the assay determination of ultra-trace urea with high sensitivity, good selectivity, and accuracy. Trace adenosine triphosphate and estradiol can also be determined by the Apt-CD_FeN catalytic analytical platform.

Multi-carbon dots and aptamer based signal amplification ratiometric fluorescence probe for protein tyrosine kinase 7 detection

Background

Protein tyrosine kinase 7 (PTK 7) is a membrane receptor, which can be found in various kinds of cancers. In view of this, detection of PTK 7 in the peripheral circulation would be an effective way for the early diagnosis of cancer.

Results

In this work, a multi-carbon dots and aptamer-based signal amplification ratiometric fluorescence probe was developed. The fluorescence of the aptamer-modified y-CDs and b-CDs were respectively chosen as the detection signal and interior label. The fluorescence of y-CDs was quenched by Fe₃O₄ and cDNA (complement to aptamer) compound without PTK 7, but recovered by the addition of PTK 7. Then, the free aptamer was cut by DNase I, which amplified the detection signal. The ratiometric fluorescence sensor for PTK 7 was established with the LOD of 0.016 ng mL⁻¹.

Conclusions

Summary, a multi-carbon dots and aptamer-based signal amplification ratiometric fluorescence probe was developed for the detection of protein tyrosine kinase 7. The developed probe was applied to PTK 7 detection in MCF-7 cells and human serum with satisfying results, thus indicating that this probe has huge potential in clinical practice.

Alginate-based magnetic nanosorbent immobilized with aptamer for selective and high adsorption of Hg2+ in water samples

Alginate-coated magnetic nanocluster (MNC) immobilized with Hg²⁺-specific aptamer was synthesized to obtain the nanosorbent with high adsorption capacity and high selectivity for trace analysis of inorganic mercury (Hg²⁺) in water samples. Magnetite nanoparticle was first synthesized by a co-precipitation of iron precursors in the presence of alginate to obtain alginate-coated MNC, followed by immobilization with avidin. Hg²⁺-Specific DNA aptamer labeled with biotin was then conjugated on the MNC surface via specific avidin-biotin interaction to form aptamer-immobilized MNC. Coating the MNC with alginate can improve its water dispersibility and also increase its adsorption capacity toward Hg²⁺ (350 mg/g). It exhibited high selectivity through thymine-Hg²⁺-thymine (T-Hg²⁺-T) interaction with high tolerance to other foreign ions. This nanosorbent showed linearity over the Hg²⁺ concentration range of 0.2-10 μg/L with a correlation coefficient of 0.9977, limit of detection of 0.46 μg/L, and enrichment factor of 13. Moreover, it also showed a potential for detection of Hg²⁺ in drinking and tap water samples with satisfactory recoveries.

Target-triggered aggregation of gold nanoparticles for photothermal quantitative detection of adenosine using a thermometer as readout

Colorimetric platform using the aggregation of gold nanoparticles (AuNPs) is a pretty simple method for biosensing, but advanced instruments such as specterophotometer is still needed to achieve accurately quantitative readout. Aggregated AuNPs exhibit excellent photothermal properties under near-infrared laser irradiation, which is significantly different from non-aggregated AuNPs. Herein, given the different photothermal effect, we translated the AuNPs-based colorimetric assay into a photothermal assay for the quantitative detection of adenosine using a thermometer as readout. Short single-stranded DNA (ssDNA, adenosine aptamer) was adsorbed on the surface of AuNPs and hence prevented the aggregation of AuNPs under high ionic concentration. The presence of adenosine caused the structural change of ssDNA and the AuNPs became aggregated. The enhanced temperature under NIR-laser irradiation has a linear response to the concentration of adenosine in the range of 2.0-50.0 μM. The detection limit was 1.7 μM. This proposed method is portable, easy and applicable to the quantitative assay of other targets by simply replacing of the sequence of ssDNA.

Fluorometric label-free aptasensor for detection of the pesticide acetamiprid by using cationic carbon dots prepared with cetrimonium bromide

A fluorometric aptamer-based method is described for sensitive detection of the pesticide acetamiprid. Cationic carbon dots (cCDs) with blue fluorescence were synthesized from cetrimonium bromide (CTAB) by a hydrothermal method. In the presence of the acetamiprid aptamers with a negative charge, the aptamers bind to the surface of the cCDs due to electrostatic attraction. As a result, the fluorescence of the cCDs is quenched partially (the best measurement was done at excitation/emission wavelengths of 360/445 nm). If acetamiprid is added to the above system, the aptamer binds to acetamiprid as a target with strong and specific affinity. Therefore, fluorescence increases proportionally to the acetamiprid concentrations. The aptasensor has a detection limit of 0.3 nM with a dynamic range from 1.6 to 120 nM which reveals that the method is sensitive in comparison to the other techniques. The selectivity of the method towards various pesticides was also studied and found to be adequate. The sensor was applied for the determination of acetamiprid in (spiked) wastewater, tap water, and tomatoes to underpin its practicability. Graphical abstract Cationic CDs (cCDs) were synthesized from cetrimonium bromide by a hydrothermal method. The addition of the negatively charged acetamiprid aptamer to a solution containing cCDs, the cCDs will be coated by the aptamer. This causes the blue fluorescence of the cCDs partially is quenched. If acetamiprid (ACP) is then added, the aptamer will bind to acetamiprid with strong and specific affinity. Hence, fluorescence will be gradually restored.

A split aptamer-labeled ratiometric fluorescent biosensor for specific detection of adenosine in human urine

A dual-emission ratiometric fluorometric aptasensor is presented for highly specific detection of adenosine. An adenosine binding aptamer (ABA) was split into two halves (termed as ABA1 and ABA2). ABA1 was covalently bound to blue-emitting carbon dots (with excitation/emission maxima at 365/440 nm) as responsive fluorophore (referred to as ABA1-CDs). ABA2 was linked to red-emitting silica-coated CdTe quantum dots (with excitation/emission maxima at 365/613 nm) acting as internal reference and referred to as ABA2-QDs@SiO₂. Upon addition of graphene oxide, the fluorescence of ABA1-CDs is quenched. After subsequent addition of ABA2-QDs@SiO₂ and different amounts of adenosine, the blue fluorescence is recovered and causes a color change from red to royal blue. The method represents a ratiometric turn-on assay for visual, colorimetric and fluorometric determination of adenosine. The limit of detection is as low as 2.4 nM in case of ratiometric fluorometry. The method was successfully applied to the determination of adenosine in (spiked) human urine. Recoveries range from 98.8% to 102%. Graphical abstract Adenosine binding aptamer1-carbon dots (ABA1-CDs) can absorb on graphene oxide (GO) via π stacking. This causes fluorescence to be quenched by fluorescence resonance energy transfer (FRET). After addition of ABA2-silica-coated quantum dots (ABA2-QDs@SiO₂) and adenosine, binding of adenosine to two pieces of aptamers forms a complex (ABA1-CD/adenosine/ABA2-QD@SiO₂) which dissociates from GO. As a result, fluorescence is recovered.

Fluorometric determination of quercetin by using graphitic carbon nitride nanoparticles modified with a molecularly imprinted polymer

The authors describe a fluorescent probe for sensitive and selective determination of quercetin, an indicator for the freshness of drinks. The probe consists of silica ball encapsulated graphitic carbon nitride (g-C₃N₄) modified with a molecularly imprinted polymer (MIP). It was synthesized via reverse microemulsion. The resulting MIP@g-C₃N₄ nanocomposite was characterized by fluorescence spectroscopy, transmission electron microscopy, Fourier transform infrared spectroscopy, and X-ray powder diffraction. Quercetin quenches the fluorescence of the MIP@g-C₃N₄ probe. The effect was used to quantify quercetin in grape juice, tea juice, black tea, and red wine by fluorometry (λ_exc = 350 nm, λ_em = 460 nm). Response is linear in the 10-1000 ng mL^-1 quercetin concentration range. The detection limit is 2.5 ng mL^-1, recoveries range between 90.7 and 94.1%, and relative standard deviations are between 2.1 and 5.5%. Graphical abstract Schematic of the synthesis of the MIP@g-C₃N₄ by a reverse microemulsion method. The probe was applied for the selective recognition and fluorometric determination of quercetin.

Colorimetric adenosine aptasensor based on DNA cycling amplification and salt-induced aggregation of gold nanoparticles

An aptamer based assay is described for the colorimetric detection of adenosine. The presence of adenosine triggers the deformation of hairpin DNA oligonucleotide (HP1) containing adenosine aptamer and then hybridizes another unlabeled hairpin DNA oligonucleotide (HP2). This leads to the formation of a double strand with a blunt 3' terminal. After exonuclease III (Exo III)-assisted degradation, the guanine-rich strand (GRS) is released from HP2. Hence, the adenosine-HP1 complex is released to the solution where it can hybridize another HP2 and initiate many cycles of the digestion reaction with the assistance of Exo III. This leads to the generation of a large number of GRS strands after multiple cycles. The GRS stabilize the red AuNPs against aggregation in the presence of potassium ions. If, however, GRS forms a G-quadruplex, it loses its ability to protect gold nanoparticles (AuNPs) from salt-induced AuNP aggregation. Therefore, the color of the solution changes from red to blue which can be visually observed. This colorimetric assay has a 0.13 nM detection limit and a wide linear range that extends from 5 nM to 1 μM. Graphical abstract Schematic presentation of a colorimetric aptamer biosensor for adenosine detection based on DNA cycling amplification and salt-induced aggregation of gold nanoparticles.

Colorimetric immunoassay for Listeria monocytogenes by using core gold nanoparticles, silver nanoclusters as oxidase mimetics, and aptamer-conjugated magnetic nanoparticles

The authors describe a rapid colorimetric assay for Listeria monocytogenes (L. monocytogenes) based on the o-phenylenediamine-mediated deaggregation of gold nanoparticles. Silver nanoclusters are used as an artificial enzyme that can oxidize o-phenylenediamine to form o-benzoquinone diamine. Aptamer and IgY antibodies were chosen to conjugate with magnetic beads and silver nanoclusters, respectively, which can recognize and bind L. monocytogenes at different specific binding sites. This results in the disassembly of colloidal gold nanoparticles which is accompanied by a color change from blue to red, with peaks at 730 and 525 nm, respectively. The method allows L. monocytogenes to be colorimetrically determined in the 10 to 10⁶ cfu·mL^-1 concentration range without pre-enrichment, and the limit of detection is as low as 10 cfu·mL^-1. Recoveries ranging from 97.4 to 101.3% are found when analyzing spiked food samples. The assay is rapid, sensitive and specific. Graphical abstract Schematic illustration of a colorimetric method for detection of L. monocytogenes based on silver nanoclusters-catalyzed oxidation of OPD and de-aggregation of GNPs. A color change from blue to red can be observed and correlated to the concentration of L. monocytogenes.