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An J, Nie Y, Xu Y. Structural insights into alcohol dehydrogenases catalyzing asymmetric reductions. Crit Rev Biotechnol 2019; 39:366-379. [DOI: 10.1080/07388551.2019.1566205] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Jianhong An
- School of Biotechnology and Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China
- School of Ophthalmology and Optometry, and Eye Hospital, Wenzhou Medical University, Wenzhou, China
- State Key Laboratory of Optometry, Ophthalmology and Vision Science, Wenzhou, China
| | - Yao Nie
- School of Biotechnology and Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China
- International Joint Research Laboratory for Brewing Microbiology, Applied Enzymology at Jiangnan University, Wuxi, China
| | - Yan Xu
- School of Biotechnology and Key Laboratory of Industrial Biotechnology, Ministry of Education, Jiangnan University, Wuxi, China
- International Joint Research Laboratory for Brewing Microbiology, Applied Enzymology at Jiangnan University, Wuxi, China
- State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi, China
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2
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The use of marine-derived fungi for preparation of enantiomerically pure alcohols. Appl Microbiol Biotechnol 2017; 102:1317-1330. [DOI: 10.1007/s00253-017-8707-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Revised: 11/27/2017] [Accepted: 12/11/2017] [Indexed: 10/18/2022]
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3
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Zhang D, Chen X, Chi J, Feng J, Wu Q, Zhu D. Semi–Rational Engineering a Carbonyl Reductase for the Enantioselective Reduction of β-Amino Ketones. ACS Catal 2015. [DOI: 10.1021/acscatal.5b00226] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Dalong Zhang
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Xi Chen
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Jing Chi
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jinhui Feng
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Qiaqing Wu
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
| | - Dunming Zhu
- National
Engineering Laboratory for Industrial Enzymes and Tianjin Engineering
Center for Biocatalytic Technology, Tianjin Institute of Industrial
Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
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Enantioselectivity and Enzyme-Substrate Docking Studies of a Ketoreductase from Sporobolomyces salmonicolor (SSCR) and Saccharomyces cerevisiae (YOL151w). INTERNATIONAL SCHOLARLY RESEARCH NOTICES 2014; 2014:124289. [PMID: 27350963 PMCID: PMC4897451 DOI: 10.1155/2014/124289] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/25/2014] [Revised: 05/26/2014] [Accepted: 06/04/2014] [Indexed: 11/18/2022]
Abstract
Models for two ketoreductases were created and used to predict the stereoselectivity of the enzymes. One was based on the crystal structure of Sporobolomyces salmonicolor. This model was used to predict the stereoselectivity for 46 ketone reductions using this enzyme; only 6 were incorrectly predicted. The stereochemistries of the products were compared to the experimental values found in the literature. The Prelog rules were also used to predict the stereoselectivity for this enzyme; however the Prelog rules seem to be highly substrate dependent. As a result, predicting stereoselectivity of KREDs is more complicated than is allowed for with just substrate size and geometry. This enzyme showed Prelog docking geometry for 13 substrates if the enzyme is assumed to prefer an anti-Prelog docking geometry. For SSCR the molecular modeling proved to be a better method for predicting stereoselectivity of the enzymes. The second model was a homology model for YOL151w based on the enzyme crystal structure of Sporobolomyces salmonicolor carbonyl reductase, SSCR. In this homology model, 14 compounds were docked and the predicted stereochemistry was compared to the literature values. Of these, 5 were incorrectly predicted.
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Saravanan T, Selvakumar R, Doble M, Chadha A. Stereochemical preference of Candida parapsilosis ATCC 7330 mediated deracemization: E- versus Z-aryl secondary alcohols. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/j.tetasy.2012.09.014] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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García-Urdiales E, Alfonso I, Gotor V. Update 1 of: Enantioselective Enzymatic Desymmetrizations in Organic Synthesis. Chem Rev 2011; 111:PR110-80. [DOI: 10.1021/cr100330u] [Citation(s) in RCA: 130] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Eduardo García-Urdiales
- Departamento de Química
Orgánica e Inorgánica, Facultad de Química, Universidad
de Oviedo, Julián Clavería, 8, 33006 Oviedo, Spain,
and
| | - Ignacio Alfonso
- Departamento de Química Biológica
y Modelización Molecular, Instituto de Química Avanzada
de Cataluña (IQAC, CSIC), Jordi Girona, 18-26, 08034, Barcelona,
Spain
| | - Vicente Gotor
- Departamento de Química
Orgánica e Inorgánica, Facultad de Química, Universidad
de Oviedo, Julián Clavería, 8, 33006 Oviedo, Spain,
and
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7
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Li H, Yang Y, Zhu D, Hua L, Kantardjieff K. Highly Enantioselective Mutant Carbonyl Reductases Created via Structure-Based Site-Saturation Mutagenesis. J Org Chem 2010; 75:7559-64. [DOI: 10.1021/jo101541n] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hongmei Li
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Yan Yang
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Dunming Zhu
- State Engineering Laboratory for Industrial Enzymes, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Ling Hua
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
- China Research Center, Genencor, A Danisco Division, Shanghai 200335, China
| | - Katherine Kantardjieff
- Department of Chemistry, California State Polytechnic University, Pomona, California 91768, United States
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Jung J, Park HJ, Uhm KN, Kim D, Kim HK. Asymmetric synthesis of (S)-ethyl-4-chloro-3-hydroxy butanoate using a Saccharomyces cerevisiae reductase: enantioselectivity and enzyme-substrate docking studies. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2010; 1804:1841-9. [PMID: 20601218 DOI: 10.1016/j.bbapap.2010.06.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2010] [Revised: 06/05/2010] [Accepted: 06/14/2010] [Indexed: 11/25/2022]
Abstract
Ethyl (S)-4-chloro-3-hydroxy butanoate (ECHB) is a building block for the synthesis of hypercholesterolemia drugs. In this study, various microbial reductases have been cloned and expressed in Escherichia coli. Their reductase activities toward ethyl-4-chloro oxobutanoate (ECOB) have been assayed. Amidst them, Baker's yeast YDL124W, YOR120W, and YOL151W reductases showed high activities. YDL124W produced (S)-ECHB exclusively, whereas YOR120W and YOL151W made (R)-form alcohol. The homology models and docking models with ECOB and NADPH elucidated their substrate specificities and enantioselectivities. A glucose dehydrogenase-coupling reaction was used as NADPH recycling system to perform continuously the reduction reaction. Recombinant E. coli cell co-expressing YDL124W and Bacillus subtilis glucose dehydrogenase produced (S)-ECHB exclusively.
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Affiliation(s)
- Jihye Jung
- Division of Biotechnology, The Catholic University of Korea, Bucheon 420-743, Republic of Korea
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Zhang S, Shi Y, Jin H, Liu Z, Zhang L, Zhang L. Covalent complexes of proteasome model with peptide aldehyde inhibitors MG132 and MG101: docking and molecular dynamics study. J Mol Model 2009; 15:1481-90. [DOI: 10.1007/s00894-009-0515-0] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2009] [Accepted: 04/01/2009] [Indexed: 01/23/2023]
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10
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Zhu D, Yang Y, Majkowicz S, Pan THY, Kantardjieff K, Hua L. Inverting the Enantioselectivity of a Carbonyl Reductase via Substrate−Enzyme Docking-Guided Point Mutation. Org Lett 2008; 10:525-8. [DOI: 10.1021/ol702638j] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Dunming Zhu
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
| | - Yan Yang
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
| | - Stephanie Majkowicz
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
| | - Thoris Hsin-Yuan Pan
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
| | - Katherine Kantardjieff
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
| | - Ling Hua
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, and W. M. Keck Foundation Center for Molecular Structure and Department of Chemistry and Biochemistry, California State UniversityFullerton, Fullerton, California 92834
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