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Jabłoński M. Halogen Bond to Experimentally Significant N-Heterocyclic Carbenes (I, IMe 2, I iPr 2, I tBu 2, IPh 2, IMes 2, IDipp 2, IAd 2; I = Imidazol-2-ylidene). Int J Mol Sci 2023; 24:ijms24109057. [PMID: 37240403 DOI: 10.3390/ijms24109057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 05/15/2023] [Accepted: 05/18/2023] [Indexed: 05/28/2023] Open
Abstract
The subjects of the article are halogen bonds between either XCN or XCCH (X = Cl, Br, I) and the carbene carbon atom in imidazol-2-ylidene (I) or its derivatives (IR2) with experimentally significant and systematically increased R substituents at both nitrogen atoms: methyl = Me, iso-propyl = iPr, tert-butyl = tBu, phenyl = Ph, mesityl = Mes, 2,6-diisopropylphenyl = Dipp, 1-adamantyl = Ad. It is shown that the halogen bond strength increases in the order Cl < Br < I and the XCN molecule forms stronger complexes than XCCH. Of all the carbenes considered, IMes2 forms the strongest and also the shortest halogen bonds with an apogee for complex IMes2⋯ICN for which D0 = 18.71 kcal/mol and dC⋯I = 2.541 Å. In many cases, IDipp2 forms as strong halogen bonds as IMes2. Quite the opposite, although characterized by the greatest nucleophilicity, ItBu2 forms the weakest complexes (and the longest halogen bonds) if X ≠ Cl. While this finding can easily be attributed to the steric hindrance exerted by the highly branched tert-butyl groups, it appears that the presence of the four C-H⋯X hydrogen bonds may also be of importance here. Similar situation occurs in the case of complexes with IAd2.
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Affiliation(s)
- Mirosław Jabłoński
- Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Torun, Poland
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Multicenter (FX) n/NH₃ Halogen Bonds (X = Cl, Br and n = 1-5). QTAIM Descriptors of the Strength of the X∙∙∙N Interaction. Molecules 2017; 22:molecules22112034. [PMID: 29165403 PMCID: PMC6150306 DOI: 10.3390/molecules22112034] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Revised: 11/14/2017] [Accepted: 11/14/2017] [Indexed: 11/16/2022] Open
Abstract
In the present work an in depth deep electronic study of multicenter XBs (FX)n/NH3 (X = Cl, Br and n = 1–5) is conducted. The ways in which X∙∙∙X lateral contacts affect the electrostatic or covalent nature of the X∙∙∙N interactions are explored at the CCSD(T)/aug-cc-pVTZ level and in the framework of the quantum theory of atoms in molecules (QTAIM). Calculations show that relatively strong XBs have been found with interaction energies lying between −41 and −90 kJ mol−1 for chlorine complexes, and between −56 and −113 kJ mol−1 for bromine complexes. QTAIM parameters reveal that in these complexes: (i) local (kinetics and potential) energy densities measure the ability that the system has to concentrate electron charge density at the intermolecular X∙∙∙N region; (ii) the delocalization indices [δ(A,B)] and the exchange contribution [VEX(X,N)] of the interacting quantum atoms (IQA) scheme, could constitute a quantitative measure of the covalence of these molecular interactions; (iii) both classical electrostatic and quantum exchange show high values, indicating that strong ionic and covalent contributions are not mutually exclusive.
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Yang X, Yan CX, Yang F, Zhou DG, Zhou PP, Liu S. Linear σ-Hole Bonding Dimers and Trimers Between Dihalogen Molecules XY (X, Y=Cl, Br) and Carbon Monoxide. ChemistrySelect 2017. [DOI: 10.1002/slct.201700075] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Xing Yang
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Chao-Xian Yan
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Fan Yang
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Da-Gang Zhou
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Pan-Pan Zhou
- State Key Laboratory of Applied Organic Chemistry; Key Laboratory of NonferrousMetal Chemistry and Resources Utilization of Gansu Province; College ofChemistry and Chemical Engineering; Lanzhou University; 222 South TianshuiRoad 730000 Lanzhou P. R. China
| | - Shubin Liu
- Research Computing Center; University of North Carolina; Chapel Hill, NC 27599 USA
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Dominikowska J, Bickelhaupt FM, Palusiak M, Fonseca Guerra C. Source of Cooperativity in Halogen-Bonded Haloamine Tetramers. Chemphyschem 2016; 17:474-80. [PMID: 26732989 DOI: 10.1002/cphc.201501130] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2015] [Indexed: 11/07/2022]
Abstract
Inspired by the isostructural motif in α-bromoacetophenone oxime crystals, we investigated halogen-halogen bonding in haloamine quartets. Our Kohn-Sham molecular orbital and energy decomposition analysis reveal a synergy that can be traced to a charge-transfer interaction in the halogen-bonded tetramers. The halogen lone-pair orbital on one monomer donates electrons into the unoccupied σ*N-X orbital on the perpendicular N-X bond of the neighboring monomer. This interaction has local σ symmetry. Interestingly, we discovered a second, somewhat weaker donor-acceptor interaction of local π symmetry, which partially counteracts the aforementioned regular σ-symmetric halogen-bonding orbital interaction. The halogen-halogen interaction in haloamines is the first known example of a halogen bond in which back donation takes place. We also find that this cooperativity in halogen bonds results from the reduction of the donor-acceptor orbital-energy gap that occurs every time a monomer is added to the aggregate.
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Affiliation(s)
- Justyna Dominikowska
- Department of Theoretical and Structural Chemistry, Faculty of Chemistry, University of Łódź, Pomorska 163/165, 90-236, Łódź, Poland.
| | - F Matthias Bickelhaupt
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands.,Institute for Molecules and Materials (IMM), Radboud University Nijmegen, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands
| | - Marcin Palusiak
- Department of Theoretical and Structural Chemistry, Faculty of Chemistry, University of Łódź, Pomorska 163/165, 90-236, Łódź, Poland
| | - Célia Fonseca Guerra
- Department of Theoretical Chemistry and Amsterdam Center for Multiscale Modeling (ACMM), VU University Amsterdam, De Boelelaan 1083, 1081 HV, Amsterdam, The Netherlands.
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Yang X, Yan CX, Zhou DG, Yang F, Zhou PP. Cooperative halogen bonds in V-shaped H3N·X1X2·X3Y (X1, X2, X3 = Cl and Br; Y = F, Cl and Br) complexes. RSC Adv 2016. [DOI: 10.1039/c6ra21018j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The dihalogen molecule can simultaneously interact with NH3 and another dihalogen molecule, forming a V-shaped trimer via cooperative halogen bonds.
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Affiliation(s)
- Xing Yang
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Chao-Xian Yan
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Da-Gang Zhou
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Fan Yang
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
| | - Pan-Pan Zhou
- Key Laboratory of Nonferrous Metal Chemistry and Resources Utilization of Gansu Province
- State Key Laboratory of Applied Organic Chemistry
- College of Chemistry and Chemical Engineering
- Lanzhou University
- Lanzhou
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Parra RD. Cooperative effects and energy barriers to bromonium ion transfer in cyclic (BrX)n halogen-bonded clusters (X=F, OH, or NH2; n=3–5): An ab initio study. COMPUT THEOR CHEM 2015. [DOI: 10.1016/j.comptc.2015.05.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Esrafili MD, Nurazar R, Mohammadian-Sabet F. Cooperative effects between tetrel bond and other σ–hole bond interactions: a comparative investigation. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1053550] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Esrafili MD, Mohammadian-Sabet F. Prediction and characterisation of a chalcogen···π interaction with acetylene as a potential electron donor in XHS···HCCH and XHSe···HCCH (X = F, Cl, Br, CN, OH, OCH3, NH2, CH3) σ-hole complexes. Mol Phys 2015. [DOI: 10.1080/00268976.2015.1039619] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Zhuo H, Li Q. Novel pnicogen bonding interactions with silylene as an electron donor: covalency, unusual substituent effects and new mechanisms. Phys Chem Chem Phys 2015; 17:9153-60. [PMID: 25758936 DOI: 10.1039/c5cp00187k] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An analogue of carbene, singlet silylene (H3P=N)2Si, was paired with the mono-substituted phosphines XH2Y (X = P, As, and Sb; Y = F, Cl, Br, and I) to form unconventional pnicogen-bonded complexes. All structures have Cs symmetry except the Sb complex, showing a deviation from this symmetry due to the coexistence of H···H interactions. The P and As complexes have different geometries from conventional pnicogen-bonded ones because the Y-X···Si line shows a large deviation from the molecular plane composed of two N atoms and one Si atom of (H3P=N)2Si. This deviation can be attributed to a new formation mechanism of the pnicogen bond due to the combined result of the LPSi→ BD*X-Y and LPX→ LP*Si orbital interactions. Generally, the pnicogen bond becomes stronger in the order of F < Cl < Br < I and weaker in the order of P > As > Sb, exhibiting an unexpected substitution effect and dependence on the nature of the pnicogen atom. These orders are inconsistent with the MEP on the X atom but can be better explained by the above orbital interactions. The Si···X interaction displays a character of covalent or partially covalent interaction, evidenced by the high interaction energy of -59.9 to -105.4 kJ mol(-1) as well as the negative energy density and the great charge transfer.
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Affiliation(s)
- Hongying Zhuo
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai 264005, People's Republic of China.
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Samimi HA, Esrafili MD, Mohammadian-Sabet F, Haddadi H. Theoretical study on cooperative interplay between anion–π and chalcogen-bonding interactions. Mol Phys 2015. [DOI: 10.1080/00268976.2014.1002551] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Asiabar BM, Esrafili MD, Mohammadian-Sabet F, Sobhi HR, Javaheri M. An ab initio study on the concerted interaction between chalcogen and pnicogen bonds. J Mol Model 2014; 20:2545. [DOI: 10.1007/s00894-014-2545-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2014] [Accepted: 11/24/2014] [Indexed: 11/25/2022]
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Esrafili MD, Mohammadirad N. Halogen bond interactions enhanced by sodium bonds — Theoretical evidence for cooperative and substitution effects in NCX···NCNa···NCY complexes (X = F, Cl, Br, I; Y = H, F, OH). CAN J CHEM 2014. [DOI: 10.1139/cjc-2014-0163] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Quantum chemical calculations are performed to study cooperativity and substituent effects between halogen bond and sodium bond interactions in NCX···NCNa···NCY complexes, where X = F, Cl, Br, I and Y = H, F, OH. These effects are studied in terms of equilibrium geometry, interaction energy, 15N nuclear magnetic resonance (NMR) parameters, and electron density analysis of the complexes at the MP2/aug-cc-pVTZ level. The X···N and Na···N bond lengths in the ternary systems are always shorter than those in the corresponding dyads. In each triad, the decrease in the halogen bond length is far greater than that of the sodium bond. In all triads studied, a favorable cooperativity is found with values that range between –0.30 and –1.72 kcal/mol. It is revealed that NMR parameters at the site of the nitrogen atom of the NCNa molecule can be regarded as a good description to quantify the degree of cooperative effects in the NCX···NCNa···NCY systems. The nature of halogen bond and sodium bond interactions of the complexes is analyzed using parameters derived from the quantum theory of atoms in molecules methodology and energy decomposition analysis.
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Affiliation(s)
- Mehdi D. Esrafili
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
| | - Nafiseh Mohammadirad
- Laboratory of Theoretical Chemistry, Department of Chemistry, University of Maragheh, Maragheh, Iran
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Lv H, Zhuo HY, Li QZ, Yang X, Li WZ, Cheng JB. Halogen bonds with N-heterocyclic carbenes as halogen acceptors: a partially covalent character. Mol Phys 2014. [DOI: 10.1080/00268976.2014.926031] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Esrafili MD, Vakili M. Halogen bonds enhanced by σ-hole and π-hole interactions: a comparative study on cooperativity and competition effects between X∙∙∙N and S∙∙∙N interactions in H3N∙∙∙XCN∙∙∙SF2 and H3N∙∙∙XCN∙∙∙SO2 complexes (X = F, Cl, Br and I). J Mol Model 2014; 20:2291. [DOI: 10.1007/s00894-014-2291-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2014] [Accepted: 05/05/2014] [Indexed: 11/29/2022]
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Esrafili MD, Vakili M. Cooperativity effects betweenσ-hole interactions: a theoretical evidence for mutual influence between chalcogen bond and halogen bond interactions in F2S···NCX···NCY complexes (X = F, Cl, Br, I; Y = H, F, OH). Mol Phys 2014. [DOI: 10.1080/00268976.2014.909057] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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A B3LYP and MP2(full) theoretical investigation on the cooperativity effect between hydrogen-bonding and cation-molecule interactions and thermodynamic property in the 1: 2 (Na+: N-(Hydroxymethyl)acetamide) ternary complex. J Mol Model 2014; 20:2154. [DOI: 10.1007/s00894-014-2154-3] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2013] [Accepted: 01/27/2014] [Indexed: 11/25/2022]
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Theoretical study of the complementarity in halogen–bonded complexes involving nitrogen and halogen as negative sites. J Mol Model 2014; 20:2101. [DOI: 10.1007/s00894-014-2101-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2013] [Accepted: 11/30/2013] [Indexed: 10/25/2022]
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