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Ranjith P, Ignatious A, Panicker CY, Sureshkumar B, Armakovic S, Armakovic SJ, Van Alsenoy C, Anto P. Spectroscopic investigations, DFT calculations, molecular docking and MD simulations of 3-[(4-Carboxyphenyl) carbamoyl]-4-hydroxy-2-oxo-1, 2-dihydroxy quinoline-6-carboxylic acid. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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2
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Structural, spectroscopic, and in silico studies of 3-(dimethylamino)-1-(thiophen-2-yl)propan-1-ol: A potential antidepressant agent. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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3
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Mary YS, Mary YS, Armaković S, Armaković SJ, Yadav R, Celik I, Mane P, Chakraborty B. Stability and reactivity study of bio-molecules brucine and colchicine towards electrophile and nucleophile attacks: Insight from DFT and MD simulations. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.116192] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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4
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Liu Y, Wang W. Atmospheric oxidation chemistry of hexafluoroisobutylene initiated by OH radical: Kinetics and mechanism. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2020.113137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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5
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Experimental and computational analysis of 1-(4-chloro-3-nitrophenyl)-3-(3,4-dichlorophenyl)thiourea. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127587] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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6
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Zhang W, Kong X, Liu S, Zhao Y. Multi‐coefficients correlation methods. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1474] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Wenna Zhang
- The Institute of Technological Sciences, Wuhan University Wuhan Hubei People's Republic of China
| | - Xirui Kong
- The Institute of Technological Sciences, Wuhan University Wuhan Hubei People's Republic of China
| | - Sheng Liu
- The Institute of Technological Sciences, Wuhan University Wuhan Hubei People's Republic of China
| | - Yan Zhao
- The Institute of Technological Sciences, Wuhan University Wuhan Hubei People's Republic of China
- State Key Laboratory of Advanced Technology for Materials Synthesis and Processing Wuhan University of Technology Wuhan Hubei People's Republic of China
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7
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Beegum S, Mary YS, Mary YS, Thomas R, Armaković S, Armaković SJ, Zitko J, Dolezal M, Van Alsenoy C. Exploring the detailed spectroscopic characteristics, chemical and biological activity of two cyanopyrazine-2-carboxamide derivatives using experimental and theoretical tools. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 224:117414. [PMID: 31376725 DOI: 10.1016/j.saa.2019.117414] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Revised: 07/13/2019] [Accepted: 07/21/2019] [Indexed: 06/10/2023]
Abstract
This article represents the spectroscopic and computational studies of two new pyrazine compounds. In order to establish the structure and functional nature of the compounds, we have employed Fourier transformed infrared (FT-IR) and Raman spectra, nuclear magnetic resonance (NMR) spectra, and ultraviolet (UV) absorptions and have compared them with the simulated computational spectra and found that they are in the agreeable range. Simulated hyperpolarisability values are used to obtain the nonlinear optic (NLO) activity of the compound, to be used in organic electronic materials. The charge transfer and related properties was investigated by the simulation of electronic spectrum with time dependent density functional theory (TD-DFT). Natural transition orbitals (NTO) provides information about which region of the molecules are more involved in the electronic transitions and the charge transfer properties for the lowest energy excitation have been analyzed on the basis of electron density variation. Molecular dynamics simulations provide information about the behavior of the molecule in solutions. Frontier orbital analysis and study of various reactivity descriptors like ALIE and Fukui provided deep knowledge on the reactivity side. Molecular docking has been also performed to investigate the interaction between title molecules and exhibits inhibitory activity against Pseudomonas aeruginosa Enoyl-Acyl carrier protein reductase (Fabl).
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Affiliation(s)
- Shargina Beegum
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - Y Sheena Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - Y Shyma Mary
- Department of Physics, Fatima Mata National College, Kollam, Kerala, India
| | - Renjith Thomas
- Department of Chemistry, St Berchmans College (Autonomous), Changanassery, Kerala, India 686101.
| | - Stevan Armaković
- University of Novi Sad, Faculty of Sciences, Department of Physics, Trg D. Obradovića 4, 21000 Novi Sad, Serbia
| | - Sanja J Armaković
- University of Novi Sad, Faculty of Sciences, Department of Chemistry, Biochemistry and Environmental Protection, Trg D. Obradovića 3, 21000 Novi Sad, Serbia
| | - Jan Zitko
- Faculty of Pharmacy in Hradec Kralove, Charles University in Prague, Heyrovskeho 1203, Hradec Kralove 500 05, Czech Republic
| | - Martin Dolezal
- Faculty of Pharmacy in Hradec Kralove, Charles University in Prague, Heyrovskeho 1203, Hradec Kralove 500 05, Czech Republic
| | - C Van Alsenoy
- Department of Chemistry, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerp, Belgium
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8
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Quinoline derivatives as possible lead compounds for anti-malarial drugs: Spectroscopic, DFT and MD study. ARAB J CHEM 2020. [DOI: 10.1016/j.arabjc.2017.07.006] [Citation(s) in RCA: 74] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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9
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Synthesis, conformational, characterization and reactivity study of 1,7-bis(4-bromophenyl)heptane-1,7-dione. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
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10
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Sureshkumar B, Mary Y, Resmi K, Suma S, Armaković S, Armaković SJ, Van Alsenoy C, Narayana B, Sobhana D. Spectroscopic characterization of hydroxyquinoline derivatives with bromine and iodine atoms and theoretical investigation by DFT calculations, MD simulations and molecular docking studies. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.04.077] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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11
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Synthesis of nano-sized zeolite-Y functionalized with 5-amino-3-thiomethyl 1H-pyrazole-4-carbonitrile for effective Fe(III)-chelating strategy. RESEARCH ON CHEMICAL INTERMEDIATES 2018. [DOI: 10.1007/s11164-018-3418-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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12
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Murthy PK, Smitha M, Sheena Mary Y, Armaković S, Armaković SJ, Rao RS, Suchetan P, Giri L, Pavithran R, Van Alsenoy C. Supramolecular architecture of 5-bromo-7-methoxy-1-methyl-1 H -benzoimidazole.3H 2 O: Synthesis, spectroscopic investigations, DFT computation, MD simulations and docking studies. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.08.038] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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13
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Sureshkumar B, Sheena Mary Y, Panicker CY, Resmi K, Suma S, Armaković S, Armaković SJ, Van Alsenoy C. Spectroscopic analysis of 8-hydroxyquinoline-5-sulphonic acid and investigation of its reactive properties by DFT and molecular dynamics simulations. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.09.014] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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14
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Sultan MA, Almansour AI, Pillai RR, Kumar RS, Arumugam N, Armaković S, Armaković SJ, Soliman SM. Synthesis, theoretical studies and molecular docking of a novel chlorinated tetracyclic: (Z/E)-3-(1,8-dichloro-9,10-dihydro-9,10-ethanoanthracen-11-yl)acrylaldehyde. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.08.101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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15
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Mary YS, Mary YS, Panicker CY, Armaković S, Armaković SJ, Narayana B, Sarojini B, Van Alsenoy C. Investigation of reactive and spectroscopic properties of oxobutanoic acid derivative: Combined spectroscopic, DFT, MD and docking study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.07.052] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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16
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Prasad KS, Nayak N, Pillai RR, Armaković S, Armaković SJ. Novel synthetic approach, spectroscopic characterization and theoretical studies on global and local reactive properties of a bibenzimidazolyl derivative. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.06.073] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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17
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Aswathy V, Alper-Hayta S, Yalcin G, Mary YS, Panicker CY, Jojo P, Kaynak-Onurdag F, Armaković S, Armaković SJ, Yildiz I, Van Alsenoy C. Modification of benzoxazole derivative by bromine-spectroscopic, antibacterial and reactivity study using experimental and theoretical procedures. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.04.010] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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18
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Mary YS, Al-Omary FA, Mostafa GA, El-Emam AA, Manjula P, Sarojini B, Narayana B, Armaković S, Armaković SJ, Van Alsenoy C. Insight into the reactive properties of newly synthesized 1,2,4-triazole derivative by combined experimental (FT-IR and FR-Raman) and theoretical (DFT and MD) study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.04.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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19
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20
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Ranjith P, Al-Abdullah ES, Al-Omary FA, El-Emam AA, Anto P, Sheena MY, Armaković S, Armaković SJ, Zitko J, Dolezal M, Van Alsenoy C. FT-IR and FT-Raman characterization and investigation of reactive properties of N-(3-iodo-4-methylphenyl)pyrazine-2-carboxamide by molecular dynamics simulations and DFT calculations. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.079] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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21
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New quinolone derivative: Spectroscopic characterization and reactivity study by DFT and MD approaches. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.045] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
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22
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Spectroscopic and reactive properties of a newly synthesized quinazoline derivative: Combined experimental, DFT, molecular dynamics and docking study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.032] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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23
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El-Azab AS, Mary YS, Mary YS, Panicker CY, Abdel-Aziz AAM, El-Sherbeny MA, Armaković S, Armaković SJ, Van Alsenoy C. Newly synthesized dihydroquinazoline derivative from the aspect of combined spectroscopic and computational study. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.01.044] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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24
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Benzon K, Sheena MY, Panicker CY, Armaković S, Armaković SJ, Pradhan K, Nanda AK, Van Alsenoy C. Studies on the synthesis, spectroscopic analysis, molecular docking and DFT calculations on 1-hydroxy-2-(4-hydroxyphenyl)-4,5-dimethyl-imidazol 3-oxide. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2016.11.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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25
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Bauzá A, Frontera A. Theoretical study on σ- and π-hole carbon⋯carbon bonding interactions: implications in CFC chemistry. Phys Chem Chem Phys 2016; 18:32155-32159. [DOI: 10.1039/c6cp06449c] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this manuscript the ability of CO2 and several CFCs to establish noncovalent carbon⋯carbon interactions with atmospheric gases CO, ethene and ethyne has been studied at the RI-MP2/def2-TZVPD level of theory.
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Affiliation(s)
- Antonio Bauzá
- Department of Chemistry Universitat de les Illes Balears
- 07122 Palma
- Spain
| | - Antonio Frontera
- Department of Chemistry Universitat de les Illes Balears
- 07122 Palma
- Spain
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26
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Vereecken L, Crowley JN, Amedro D. Theoretical study of the OH-initiated atmospheric oxidation mechanism of perfluoro methyl vinyl ether, CF3OCFCF2. Phys Chem Chem Phys 2015; 17:28697-704. [DOI: 10.1039/c5cp04839g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fluorinated product glycolaldehyde can be catalytically converted to glyoxal + HF by H2O.
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Affiliation(s)
- L. Vereecken
- Max Planck Institute for Chemistry
- Atmospheric Sciences
- Mainz
- Germany
| | - J. N. Crowley
- Max Planck Institute for Chemistry
- Atmospheric Sciences
- Mainz
- Germany
| | - D. Amedro
- Max Planck Institute for Chemistry
- Atmospheric Sciences
- Mainz
- Germany
- Division of Chemistry and Chemical Engineering
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