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Biaggne A, Spear L, Barcenas G, Ketteridge M, Kim YC, Melinger JS, Knowlton WB, Yurke B, Li L. Data-Driven and Multiscale Modeling of DNA-Templated Dye Aggregates. Molecules 2022; 27:3456. [PMID: 35684394 PMCID: PMC9182218 DOI: 10.3390/molecules27113456] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Revised: 05/21/2022] [Accepted: 05/23/2022] [Indexed: 02/04/2023] Open
Abstract
Dye aggregates are of interest for excitonic applications, including biomedical imaging, organic photovoltaics, and quantum information systems. Dyes with large transition dipole moments (μ) are necessary to optimize coupling within dye aggregates. Extinction coefficients (ε) can be used to determine the μ of dyes, and so dyes with a large ε (>150,000 M−1cm−1) should be engineered or identified. However, dye properties leading to a large ε are not fully understood, and low-throughput methods of dye screening, such as experimental measurements or density functional theory (DFT) calculations, can be time-consuming. In order to screen large datasets of molecules for desirable properties (i.e., large ε and μ), a computational workflow was established using machine learning (ML), DFT, time-dependent (TD-) DFT, and molecular dynamics (MD). ML models were developed through training and validation on a dataset of 8802 dyes using structural features. A Classifier was developed with an accuracy of 97% and a Regressor was constructed with an R2 of above 0.9, comparing between experiment and ML prediction. Using the Regressor, the ε values of over 18,000 dyes were predicted. The top 100 dyes were further screened using DFT and TD-DFT to identify 15 dyes with a μ relative to a reference dye, pentamethine indocyanine dye Cy5. Two benchmark MD simulations were performed on Cy5 and Cy5.5 dimers, and it was found that MD could accurately capture experimental results. The results of this study exhibit that our computational workflow for identifying dyes with a large μ for excitonic applications is effective and can be used as a tool to develop new dyes for excitonic applications.
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Affiliation(s)
- Austin Biaggne
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
| | - Lawrence Spear
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
| | - German Barcenas
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
| | - Maia Ketteridge
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
| | - Young C. Kim
- Materials Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC 20375, USA;
| | - Joseph S. Melinger
- Electronics Science and Technology Division, U.S. Naval Research Laboratory, Washington, DC 20375, USA;
| | - William B. Knowlton
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA
| | - Bernard Yurke
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
- Department of Electrical and Computer Engineering, Boise State University, Boise, ID 83725, USA
| | - Lan Li
- Micron School of Materials Science and Engineering, Boise State University, Boise, ID 83725, USA; (A.B.); (L.S.); (G.B.); (M.K.); (W.B.K.); (B.Y.)
- Center for Advanced Energy Studies, Idaho Falls, ID 83401, USA
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Afolabi SO, Semire B, Idowu MA. Electronic and optical properties' tuning of phenoxazine-based D-A 2-π-A 1 organic dyes for dye-sensitized solar cells. DFT/TDDFT investigations. Heliyon 2021; 7:e06827. [PMID: 33981890 PMCID: PMC8082551 DOI: 10.1016/j.heliyon.2021.e06827] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2020] [Revised: 12/13/2020] [Accepted: 04/13/2021] [Indexed: 12/01/2022] Open
Abstract
Modulation of molecular features of metal free organic dyes is important to present sensitizers with competing electronic and optical properties for dye sensitized solar cells (DSSCs). The D-A2-π-A1 molecular design based on phenothiazine skeleton (D) connected with benzothiadiazole (A2) linked with furan π-spacer and acceptor unit of cynoacrylic acid (A1) were fabricated and examined theoretically for possible use as DSSCs. Density functional theory (DFT) and time dependent density functional theory TDDFT were used to study the effect of additional donors on the photophysical properties of the dyes. Eight (8) different donor subunits were introduced at C7 of phenoxazine based dye skeleton to extend the π-conjugation, lower HOMO-LUMO gap (Eg) and improve photo-current efficiency of the dye sensitizer. All the dye sensitizers (except P3 and P4) exhibited capability of injecting electrons into the conduction band of the semiconductor (TiO2) and regenerated via redox potential (I−/I3-) electrode. Attachment of 2-hexylthiophene (P2) remarkably lowered the Eg, extended π-electron delocalization, hence, gives higher absorption wavelength (λmax) at 752 nm. The donor subunit containing 2-hexylthiophene (P2) presented the best chemical hardness, open circuit voltage (Voc), and other comparable electronic properties, making P2 the best DSSC candidate amongst the optimized dyes. The reported dyes would be interesting for further experimental research.
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Affiliation(s)
| | - Banjo Semire
- Department of Pure and Applied Chemistry, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - Mopelola Abidemi Idowu
- Department of Chemistry, Federal University of Agriculture, P.M.B. 2240, Abeokuta, Nigeria
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Divya VV, Suresh CH. Tuning the donating strength of dye sensitizers using molecular electrostatic potential analysis. NEW J CHEM 2021. [DOI: 10.1039/d0nj04797j] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The significance of electron releasing groups at the donors of D–π–A systems for improving the donating strength and power conversion efficiency of photosensitizers.
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Affiliation(s)
- Velayudhan V. Divya
- Chemical Sciences and Technology Division
- CSIR-National Institute for Interdisciplinary Science and Technology
- Thiruvananthapuram
- India
- Academy of Scientific and Innovative Research (AcSIR)
| | - Cherumuttathu H. Suresh
- Chemical Sciences and Technology Division
- CSIR-National Institute for Interdisciplinary Science and Technology
- Thiruvananthapuram
- India
- Academy of Scientific and Innovative Research (AcSIR)
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Paul A, Furmanchuk A, Liao W, Choudhary A, Agrawal A. Property Prediction of Organic Donor Molecules for Photovoltaic Applications Using Extremely Randomized Trees. Mol Inform 2019; 38:e1900038. [DOI: 10.1002/minf.201900038] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2019] [Accepted: 07/18/2019] [Indexed: 01/16/2023]
Affiliation(s)
- Arindam Paul
- Department of Electrical and Computer Engineering Northwestern University Evanston IL, 60208 USA
| | - Alona Furmanchuk
- Institute for Public Health and Medicine, Feinberg School of Medicine, Center for Health Information Partnerships Northwestern University Chicago IL, 60611 USA
| | - Wei‐keng Liao
- Department of Electrical and Computer Engineering Northwestern University Evanston IL, 60208 USA
| | - Alok Choudhary
- Department of Electrical and Computer Engineering Northwestern University Evanston IL, 60208 USA
| | - Ankit Agrawal
- Department of Electrical and Computer Engineering Northwestern University Evanston IL, 60208 USA
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Zarate X, Claveria-Cadiz F, Arias-Olivares D, Rodriguez-Serrano A, Inostroza N, Schott E. Effects of the acceptor unit in dyes with acceptor–bridge–donor architecture on the electron photo-injection mechanism and aggregation in DSSCs. Phys Chem Chem Phys 2016; 18:24239-51. [DOI: 10.1039/c6cp04662b] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The photo-injection mechanism is influenced by the acceptor motif of dyes in dye-sensitized solar cells (DSSCs).
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Affiliation(s)
- Ximena Zarate
- Instituto de Ciencias Químicas Aplicadas
- Facultad de Ingeniería
- Santiago
- Chile
| | - Francisca Claveria-Cadiz
- Doctorado en Fisicoquímica Molecular
- Facultad de Ciencias Exactas
- Universidad Andres Bello
- Santiago
- Chile
| | - David Arias-Olivares
- Doctorado en Fisicoquímica Molecular
- Facultad de Ciencias Exactas
- Universidad Andres Bello
- Santiago
- Chile
| | | | - Natalia Inostroza
- Instituto de Ciencias Químicas Aplicadas
- Facultad de Ingeniería
- Santiago
- Chile
| | - Eduardo Schott
- Departamento de Química Inorgánica
- Facultad de Química
- Santiago
- Chile
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