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Li Z, Song LF, Li P, Merz KM. Parametrization of Trivalent and Tetravalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models. J Chem Theory Comput 2021; 17:2342-2354. [PMID: 33793233 DOI: 10.1021/acs.jctc.0c01320] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Commonly seen in rare-earth chemistry and materials science, highly charged metal ions play key roles in many chemical processes. Computer simulations have become an important tool for scientific research nowadays. Meaningful simulations require reliable parameters. In the present work, we parametrized 18 M(III) and 6 M(IV) metal ions for four new water models (OPC3, OPC, TIP3P-FB, TIP4P-FB) in conjunction with each of the 12-6 and 12-6-4 nonbonded models. Similar to what was observed previously, issues with the 12-6 model can be fixed by using the 12-6-4 model. Moreover, the four new water models showed comparable performance or considerable improvement over the previous water models (TIP3P, SPC/E, and TIP4PEW) in the same category (3-point or 4-point water models, respectively). Finally, we reported a study of a metalloprotein system demonstrating the capability of the 12-6-4 model to model metalloproteins. The reported parameters will facilitate accurate simulations of highly charged metal ions in aqueous solution.
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Affiliation(s)
- Zhen Li
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Lin Frank Song
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States
| | - Pengfei Li
- Department of Chemistry, Yale University, New Haven, Connecticut 06511, United States.,Department of Chemistry and Biochemistry, Loyola University Chicago, Chicago, Illinois 60660, United States
| | - Kenneth M Merz
- Department of Chemistry, Michigan State University, East Lansing, Michigan 48824, United States.,Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824, United States
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Shor AM, Ivanova-Shor EA, Chiorescu I, Krüger S, Rösch N. Hydration Structure and Hydrolysis of U(IV) and Np(IV) Ions: A Comparative Density Functional Study Using a Modified Continuum Solvation Approach. J Phys Chem A 2020; 124:3805-3814. [PMID: 32302136 DOI: 10.1021/acs.jpca.9b11862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We studied the hydration and the first hydrolysis reaction of U(IV) and Np(IV) ions in an aqueous environment, applying a relativistic density functional method together with a recently proposed variant of a continuum solvation model where the solute cavities are constructed with effective atomic radii, based on charge-dependent scaling factors. In this way, one obtains improved solvation energies of charged species. We demonstrate that solute cavities, constructed with scaled atomic radii as described, permit one to calculate hydrolysis constants of acceptable accuracy. As a consequence, one is also able to estimate free hydration energies of U(IV) and Np(IV) in adequate agreement with empirical data. According to the model calculations, U(IV) is coordinated by eight to nine water molecules, while the preferred coordination number of Np(IV) is 8. For the highly charged ions under study, the modified solvation model simultaneously yields improved geometries, hydration energies, and hydrolysis constants.
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Affiliation(s)
- Aleksey M Shor
- Institute of Chemistry and Chemical Technology SB RAS, Federal Research Center "Krasnoyarsk Scientific Center SB RAS", 660036 Krasnoyarsk, Russia
| | - Elena A Ivanova-Shor
- Institute of Chemistry and Chemical Technology SB RAS, Federal Research Center "Krasnoyarsk Scientific Center SB RAS", 660036 Krasnoyarsk, Russia
| | - Ion Chiorescu
- Department Chemie, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Sven Krüger
- Department Chemie, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
| | - Notker Rösch
- Department Chemie, Technische Universität München, Lichtenbergstr. 4, 85747 Garching, Germany
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3
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Ma J, Yang C, Han J, Yu J, Hu S, Yu H, Long X. Density Functional Theory Investigations on the Mechanism of Formation of Pa(V) Ion in Hydrous Solutions. Molecules 2019; 24:E1169. [PMID: 30934559 PMCID: PMC6471942 DOI: 10.3390/molecules24061169] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Revised: 03/18/2019] [Accepted: 03/19/2019] [Indexed: 11/16/2022] Open
Abstract
Due to the enormous threat of protactinium to the environment and human health, its disposal and chemistry have long been important topics in nuclear science. [PaO(H₂O)₆]3+ is proposed as the predominant species in hydrous and acidic solutions, but little is known about its formation mechanism. In this study, density functional theory (DFT) calculations demonstrate a water coordination-proton transfer-water dissociation mechanism for the formation of PaO3+ in hydrous solutions. First, Pa(V) ion preferentially forms hydrated complexes with a coordination number of 10. Through hydrogen bonding, water molecules in the second coordination sphere easily capture two protons on the same coordinated H₂O ligand to form [PaO(H₂O)₉]3+. Water dissociation then occurs to generate the final [PaO(H₂O)₆]3+, which is the thermodynamic product of Pa(V) in hydrous solutions.
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Affiliation(s)
- Jun Ma
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, Sichuan, China.
| | - Chuting Yang
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, Sichuan, China.
| | - Jun Han
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, Sichuan, China.
| | - Jie Yu
- Department of Chemistry and Center for Atomic Engineering of Advanced Materials, Anhui University, Hefei 230601, China.
| | - Sheng Hu
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, Sichuan, China.
| | - Haizhu Yu
- Department of Chemistry and Center for Atomic Engineering of Advanced Materials, Anhui University, Hefei 230601, China.
| | - Xinggui Long
- Institute of Nuclear Physics and Chemistry, China Academy of Engineering Physics, Mianyang 621900, Sichuan, China.
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Wang B, Xia CJ, Fang HL, Chen WJ, Zhang YF, Huang X. Mononuclear thorium halide clusters ThX 4 (X = F, Cl): gas-phase hydrolysis reactions. Phys Chem Chem Phys 2018; 20:21184-21193. [PMID: 30083693 DOI: 10.1039/c8cp03071e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Density functional theory (DFT) calculations have been performed to explore the gas-phase hydrolysis reaction of mononuclear thorium halide clusters ThX4 (X = F, Cl). We have found that the hydrolysis of ThCl4 is easier than that of ThF4. Furthermore, their hydrolysis reactions favor pathways of direct dehydration of Th(OH)4 instead of further hydrolysis of ThOX2. There are some differences between the hydrolysis of ThCl4 and that of MCl4 (M = Ti, Zr and Hf). The X-HY (X = F, Cl; Y = F, Cl and OH) hydrogen bonds play an important role in the hydrogen transfer process of the hydrolysis reaction. The differences in the steric effects and bonding may be important factors that are related to the disparities in the hydrolysis of the above-mentioned metal halides.
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Affiliation(s)
- Bin Wang
- College of Chemistry, Fuzhou University, Fuzhou, Fujian 350116, P. R. China.
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Montagna M, Spezia R, Bodo E. Solvation Properties of the Actinide Ion Th(IV) in DMSO and DMSO:Water Mixtures through Polarizable Molecular Dynamics. Inorg Chem 2017; 56:11929-11937. [DOI: 10.1021/acs.inorgchem.7b01900] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Maria Montagna
- Chemistry Department, University of Rome “La Sapienza”, P. A. Moro 5, 00185, Rome, Italy
| | - Riccardo Spezia
- LAMBE, Université d’Evry Val d’Essonne, CEA, CNRS, Université Paris Saclay, F-91025 Evry, France
| | - Enrico Bodo
- Chemistry Department, University of Rome “La Sapienza”, P. A. Moro 5, 00185, Rome, Italy
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