APUAMA: a software tool for reaction rate calculations

Reaction of the N Atom with Electronically Excited O2 Revisited: A Theoretical Study

The kinetics of the reaction of N with electronically excited O₂ (singlet a¹Δ_g and b¹Σ_g⁺ states), potentially relevant for NO_x formation in nonthermal air plasma, is theoretically studied using the multireference second-order perturbation theory. The corresponding thermodynamically and kinetically favored reaction pathways together with possible intersystem crossings are identified. It has been revealed that the energy barrier for the N + O₂(a¹Δ_g) → NO + O reaction is approximately twice the barrier height for the counterpart process with O₂(X³Σ_g^-). The molecular oxygen in the b¹Σ_g⁺ state, in turn, proved to be even less reactive to atomic nitrogen than O₂(a¹Δ_g). Appropriate thermal rate constants for specified reaction channels are calculated by the variational transition-state theory incorporating corrections for the tunneling effect, nonadiabatic transitions, and anharmonicity of vibrations for transition states and reactants. The corresponding three-parameter Arrhenius expressions for the broad temperature range (T = 300-4000 K) are reported. At last, post-transition-state molecular dynamics simulations indicate that the N + O₂(a¹Δ_g) reaction produces vibrationally much colder NO molecules than the N + O₂(X³Σ_g^-) process.

"Transitivity": A Code for Computing Kinetic and Related Parameters in Chemical Transformations and Transport Phenomena

The Transitivity function, defined in terms of the reciprocal of the apparent activation energy, measures the propensity for a reaction to proceed and can provide a tool for implementing phenomenological kinetic models. Applications to systems which deviate from the Arrhenius law at low temperature encouraged the development of a user-friendly graphical interface for estimating the kinetic and thermodynamic parameters of physical and chemical processes. Here, we document the Transitivity code, written in Python, a free open-source code compatible with Windows, Linux and macOS platforms. Procedures are made available to evaluate the phenomenology of the temperature dependence of rate constants for processes from the Arrhenius and Transitivity plots. Reaction rate constants can be calculated by the traditional Transition-State Theory using a set of one-dimensional tunneling corrections (Bell (1935), Bell (1958), Skodje and Truhlar and, in particular, the deformed ( d -TST) approach). To account for the solvent effect on reaction rate constant, implementation is given of the Kramers and of Collins-Kimball formulations. An input file generator is provided to run various molecular dynamics approaches in CPMD code. Examples are worked out and made available for testing. The novelty of this code is its general scope and particular exploit of d -formulations to cope with non-Arrhenius behavior at low temperatures, a topic which is the focus of recent intense investigations. We expect that this code serves as a quick and practical tool for data documentation from electronic structure calculations: It presents a very intuitive graphical interface which we believe to provide an excellent working tool for researchers and as courseware to teach statistical thermodynamics, thermochemistry, kinetics, and related areas.