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Makshakova ON, Gafurov MR, Goldberg MA. The Mutual Incorporation of Mg 2+ and CO 32- into Hydroxyapatite: A DFT Study. MATERIALS (BASEL, SWITZERLAND) 2022; 15:9046. [PMID: 36556852 PMCID: PMC9781354 DOI: 10.3390/ma15249046] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/10/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
Hydroxyapatite (HA) with a stoichiometry composition of Ca10(PO4)6(OH)2 is widely applied for various biomedical issues, first of all for bone defect substitution, as a catalyst, and as an adsorbent for soil and water purification. The incorporation of foreign ions changes the acid-base relation, microstructure, porosity, and other properties of the HA materials. Here, we report the results of calculations of the density functional theory and analyze the possibility of two foreign ions, CO32- and Mg2+, to be co-localized in the HA structure. The Na+ was taken into account for charge balance preservation. The analysis revealed the favorable incorporation of CO32- and Mg2+ as a complex when they interact with each other. The energy gain over the sole ion incorporation was pronounced when CO32- occupied the A position and Mg2+ was in the Ca(2) position and amounted to -0.31 eV. In the most energy-favorable complex, the distance between Mg2+ and the O atom of carbonate ion decreased compared to Mg…O distances to the surrounding phosphate or hydroxide ions, and amounted to 1.98 Å. The theoretical calculations agree well with the experimental data reported earlier. Understating the structure-properties relationship in HA materials varying in terms of composition, stoichiometry, and morphology paves the way to rational designs of efficient bio-based catalytic systems.
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Affiliation(s)
- Olga N. Makshakova
- Kazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia
| | - Marat R. Gafurov
- Institute of Physics, Kazan Federal University, 420008 Kazan, Russia
| | - Margarita A. Goldberg
- A.A. Baikov Institute of Metallurgy and Materials Science, Russian Academy of Sciences, 119334 Moscow, Russia
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Wang J, Wang R, Yang M, Xu D. Understanding Zinc-Doped Hydroxyapatite Structures Using the First-Principles Calculations and Convolutional Neural Network Algorithm. J Mater Chem B 2022; 10:1281-1290. [DOI: 10.1039/d1tb02687a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Element doping is widely used to improve the performance of materials by changing their intrinsic properties. However, the lack of direct crystallographic structures for dopants has restricted the effective high-throughput...
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Zhu C, Zhou X, Liu Z, Chen H, Wu H, Yang X, Zhu X, Ma J, Dong H. The Morphology of Hydroxyapatite Nanoparticles Regulates Cargo Recognition in Clathrin-Mediated Endocytosis. Front Mol Biosci 2021; 8:627015. [PMID: 33748189 PMCID: PMC7969717 DOI: 10.3389/fmolb.2021.627015] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2020] [Accepted: 01/15/2021] [Indexed: 01/06/2023] Open
Abstract
The clathrin-associated protein adaptin-2 (AP2) is a distinctive member of the hetero-tetrameric clathrin adaptor complex family. It plays a crucial role in many intracellular vesicle transport pathways. The hydroxyapatite (HAp) nanoparticles can enter cells through clathrin-dependent endocytosis, induce apoptosis, and ultimately inhibit tumor metastasis. Exploring the micro process of the binding of AP2 and HAp is of great significance for understanding the molecular mechanism of HAp's anti-cancer ability. In this work, we used molecular modeling to study the binding of spherical, rod-shaped, and needle-shaped HAps toward AP2 protein at the atomic level and found that different nanoparticles' morphology can determine their binding specificity through electrostatic interactions. Our results show that globular HAp significantly changes AP2 protein conformation, while needle-shaped HAP has more substantial binding energy with AP2. Therefore, this work offers a microscopic picture for cargo recognition in clathrin-mediated endocytosis, clarifies the design principles and possible mechanisms of high-efficiency nano-biomaterials, and provides a basis for their potential anti-tumor therapeutic effects.
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Affiliation(s)
- Cheng Zhu
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
- Tianjin Key Laboratory of Function and Application of Biological Macromolecular Structures, School of Life Sciences, Tianjin University, Tianjin, China
| | - Xuejie Zhou
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
| | - Ziteng Liu
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
| | - Hongwei Chen
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
| | - Hongfeng Wu
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, China
| | - Xiao Yang
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, China
| | - Xiangdong Zhu
- National Engineering Research Center for Biomaterials, Sichuan University, Chengdu, China
| | - Jing Ma
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, China
- Nanxin Pharm. Co., Ltd., Nanjing, China
| | - Hao Dong
- Kuang Yaming Honors School, Nanjing University, Nanjing, China
- Nanxin Pharm. Co., Ltd., Nanjing, China
- Institute for Brain Sciences, Nanjing University, Nanjing, China
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