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Gadd GM, Fomina M, Pinzari F. Fungal biodeterioration and preservation of cultural heritage, artwork, and historical artifacts: extremophily and adaptation. Microbiol Mol Biol Rev 2024; 88:e0020022. [PMID: 38179930 PMCID: PMC10966957 DOI: 10.1128/mmbr.00200-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2023] [Accepted: 09/11/2023] [Indexed: 01/06/2024] Open
Abstract
SUMMARYFungi are ubiquitous and important biosphere inhabitants, and their abilities to decompose, degrade, and otherwise transform a massive range of organic and inorganic substances, including plant organic matter, rocks, and minerals, underpin their major significance as biodeteriogens in the built environment and of cultural heritage. Fungi are often the most obvious agents of cultural heritage biodeterioration with effects ranging from discoloration, staining, and biofouling to destruction of building components, historical artifacts, and artwork. Sporulation, morphological adaptations, and the explorative penetrative lifestyle of filamentous fungi enable efficient dispersal and colonization of solid substrates, while many species are able to withstand environmental stress factors such as desiccation, ultra-violet radiation, salinity, and potentially toxic organic and inorganic substances. Many can grow under nutrient-limited conditions, and many produce resistant cell forms that can survive through long periods of adverse conditions. The fungal lifestyle and chemoorganotrophic metabolism therefore enable adaptation and success in the frequently encountered extremophilic conditions that are associated with indoor and outdoor cultural heritage. Apart from free-living fungi, lichens are a fungal growth form and ubiquitous pioneer colonizers and biodeteriogens of outdoor materials, especially stone- and mineral-based building components. This article surveys the roles and significance of fungi in the biodeterioration of cultural heritage, with reference to the mechanisms involved and in relation to the range of substances encountered, as well as the methods by which fungal biodeterioration can be assessed and combated, and how certain fungal processes may be utilized in bioprotection.
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Affiliation(s)
- Geoffrey Michael Gadd
- Geomicrobiology Group, School of Life Sciences, University of Dundee, Dundee, United Kingdom
- State Key Laboratory of Heavy Oil Processing, Beijing Key Laboratory of Oil and Gas Pollution Control, College of Chemical Engineering and Environment, China University of Petroleum, Beijing, China
| | - Marina Fomina
- Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, Kyiv, Ukraine
- National Reserve “Sophia of Kyiv”, Kyiv, Ukraine
| | - Flavia Pinzari
- Institute for Biological Systems (ISB), Council of National Research of Italy (CNR), Monterotondo (RM), Italy
- Natural History Museum, London, United Kingdom
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Ramamoorthy NK, Pallam RB, Subash Chandrabose K, Sahadevan R, Vemuri VS. A critical process variable-regulated, parameter-balancing auxostat, performed using disposed COVID-19 personal protective equipment-based substrate mixture, yields sustained and improved endoglucanase titers. Prep Biochem Biotechnol 2024; 54:19-38. [PMID: 37149786 DOI: 10.1080/10826068.2023.2204479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Fifty percent of the overall operational expenses of biorefineries are incurred during enzymatic-saccharification processes. Cellulases have a global-market value of $1621 USD. Dearth of conventional lignocelluloses have led to the exploration of their waste stream-based, unconventional sources. Native fungus-employing cellulase-production batches fail to yield sustained enzyme titers. It could be attributed to variations in the enzyme-production broth's quasi-dilatant behavior, its fluid and flow properties; heat and oxygen transfer regimes; kinetics of fungal growth; and nutrient utilization. The current investigation presents one of the first-time usages of a substrate mixture, majorly comprising disposed COVID-19 personal protective-equipment (PPE). To devise a sustainable and scalable cellulase-production process, various variable-regulated, continuous-culture auxostats were performed. The glucose concentration-maintaining auxostat recorded consistent endoglucanase titers throughout its feeding-cum-harvest cycles; furthermore, it enhanced oxygen transfer, heat transfer co-efficient, and mass transfer co-efficient by 91.5, 36, and 77%, respectively. Substrate-characterization revealed that an unintended, autoclave-based organsolv pretreatment caused unanticipated increases in endoglucanase titers. The cumulative lab-scale cellulase-production cost was found to be $16.3. The proposed approach is economical, and it offers a pollution-free waste management process, thereby generating carbon credits.
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Affiliation(s)
- Navnit Kumar Ramamoorthy
- Fungal Biotechnology Laboratory, Department of Biotechnology, Pondicherry University, Kalapet, India
| | - Revanth Babu Pallam
- Fungal Biotechnology Laboratory, Department of Biotechnology, Pondicherry University, Kalapet, India
| | | | | | - Venkateswara Sarma Vemuri
- Fungal Biotechnology Laboratory, Department of Biotechnology, Pondicherry University, Kalapet, India
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Ramamoorthy NK, Pallam RB, Renganathan S, Sarma VV. Cellulase production from disposed COVID-19 personal protective equipment (PPE) using cyclic fed-batch strategies. Process Biochem 2023. [DOI: 10.1016/j.procbio.2023.02.013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 02/15/2023]
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Ramamoorthy NK, Vengadesan V, Pallam RB, Sadras SR, Sahadevan R, Sarma VV. A pilot-scale sustainable biorefinery, integrating mushroom cultivation and in-situ pretreatment-cum-saccharification for ethanol production. Prep Biochem Biotechnol 2023; 53:954-967. [PMID: 36633578 DOI: 10.1080/10826068.2022.2162922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Biomass pretreatment incurs 40% of the overall cost of biorefinery operations. The usage of mushroom cultivation as a pretreatment/delignification technique, and bio-ethanol production from spent mushroom substrates, after subsequent pretreatment, saccharification and fermentation processes, have been reported earlier. However, the present pilot-scale, entirely-organic demonstration is one of the very first biorefinery models, which efficiently consolidates: biomass pretreatment; in-situ cellulase production and saccharification; mushroom cultivation, thereby improving the overall operational economy. During pretreatment, the oyster mushroom, Pluerotus florida VS-6, matures into distinct substrate mycelia and fruiting bodies. Consequential variations in the kinetics of growth, biomass degradation/substrate utilization, oxygen uptake and transfer rates, and enzyme production, have been analyzed. Signifying the first-time usage of a biomass mixture, comprising vegetative waste and e-commerce packaging waste, the 30 day-long, bio-economical, non-inhibitor-generating, catabolite repression-limited, solid-state in-situ pretreatment-cum-saccharification, resulted in: 78% lignin degradation; 13.25% soluble-sugar release; 18.25% mushroom yield; 0.88 FPU/g.ds cellulase secretion. The in-situ saccharified biomass, when sequentially subjected to ex-situ enzymatic hydrolysis and fermentation, showed 37.35% saccharification, and a bio-ethanol yield of 0.425 g per g of glucose, respectively. Apart from yielding engine-ready bio-ethanol, the model doubles as an agripreneurial proposition, and encourages mushroom cultivation and consumption.
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Affiliation(s)
- Navnit Kumar Ramamoorthy
- Department of Biotechnology, Fungal Biotechnology Laboratory, Pondicherry University, Kalapet, Pondicherry, India
| | - Vinoth Vengadesan
- Department of Biochemistry and Molecular Biology, Pondicherry University, Kalapet, Pondicherry, India
| | - Revanth Babu Pallam
- Department of Biotechnology, Fungal Biotechnology Laboratory, Pondicherry University, Kalapet, Pondicherry, India
| | - Sudha Rani Sadras
- Department of Biochemistry and Molecular Biology, Pondicherry University, Kalapet, Pondicherry, India
| | | | - Vemuri Venkateswara Sarma
- Department of Biotechnology, Fungal Biotechnology Laboratory, Pondicherry University, Kalapet, Pondicherry, India
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Stephenson KS, Gow NAR, Davidson FA, Gadd GM. Regulation of vectorial supply of vesicles to the hyphal tip determines thigmotropism in Neurospora crassa. Fungal Biol 2014; 118:287-94. [PMID: 24607352 DOI: 10.1016/j.funbio.2013.12.007] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2013] [Revised: 12/19/2013] [Accepted: 12/22/2013] [Indexed: 01/03/2023]
Abstract
Thigmotropism is the ability of an organism to respond to a topographical stimulus by altering its axis of growth. The thigmotropic response of the model fungus Neurospora crassa was quantified using microfabricated glass slides with ridges of defined height. We show that the polarity machinery at the hyphal tip plays a role in the thigmotropic response of N. crassa. Deletion of N. crassa genes encoding the formin, BNI-1, and the Rho-GTPase, CDC-42, an activator of BNI-1 in yeast, CDC-24, its guanine nucleotide exchange factor (GEF), and BEM-1, a scaffold protein in the same pathway, were all shown to significantly decrease the thigmotropic response. In contrast, deletion of genes encoding the cell end-marker protein, TEA-1, and KIP-1, the kinesin responsible for the localisation of TEA-1, significantly increased the thigmotropic response. These results suggest a mechanism of thigmotropism involving vesicle delivery to the hyphal tip via the actin cytoskeleton and microtubules. Neurospora crassa thigmotropic response differed subtly from that of Candida albicans where the stretch-activated calcium channel, Mid1, has been linked with thigmotropic behaviour. The MID-1 deficient mutant of N. crassa (Δmid-1) and the effects of calcium depletion were examined here but no change in the thigmotropic response was observed. However, SPRAY, a putative calcium channel protein, was shown to be required for N. crassa thigmotropism. We propose that the thigmotropic response is a result of changes in the polarity machinery at the hyphal tip which are thought to be downstream effects of calcium signalling pathways triggered by mechanical stress at the tip.
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Affiliation(s)
- Karen S Stephenson
- Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee, DD1 5EH Scotland, United Kingdom
| | - Neil A R Gow
- The Aberdeen Fungal Group, School of Medical Sciences, Institute of Medical, Sciences, University of Aberdeen, Aberdeen, AB25 2ZD Scotland, United Kingdom
| | - Fordyce A Davidson
- Division of Mathematics, University of Dundee, Dundee, DD14HN Scotland, United Kingdom
| | - Geoffrey M Gadd
- Geomicrobiology Group, College of Life Sciences, University of Dundee, Dundee, DD1 5EH Scotland, United Kingdom.
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Gadd GM, Rhee YJ, Stephenson K, Wei Z. Geomycology: metals, actinides and biominerals. ENVIRONMENTAL MICROBIOLOGY REPORTS 2012; 4:270-96. [PMID: 23760792 DOI: 10.1111/j.1758-2229.2011.00283.x] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Geomycology can be simply defined as 'the scientific study of the roles of fungi in processes of fundamental importance to geology' and the biogeochemical importance of fungi is significant in several key areas. These include nutrient and element cycling, rock and mineral transformations, bioweathering, mycogenic biomineral formation and interactions of fungi with clay minerals and metals. Such processes can occur in aquatic and terrestrial habitats, but it is in the terrestrial environment where fungi probably have the greatest geochemical influence. Of special significance are the mutualistic relationships with phototrophic organisms, lichens (algae, cyanobacteria) and mycorrhizas (plants). Central to many geomycological processes are transformations of metals and minerals, and fungi possess a variety of properties that can effect changes in metal speciation, toxicity and mobility, as well as mineral formation or mineral dissolution or deterioration. Some fungal transformations have beneficial applications in environmental biotechnology, e.g. in metal and radionuclide leaching, recovery, detoxification and bioremediation, and in the production or deposition of biominerals or metallic elements with catalytic or other properties. Metal and mineral transformations may also result in adverse effects when these processes result in spoilage and destruction of natural and synthetic materials, rock and mineral-based building materials (e.g. concrete), acid mine drainage and associated metal pollution, biocorrosion of metals, alloys and related substances, and adverse effects on radionuclide speciation, mobility and containment. The ubiquity and importance of fungi in biosphere processes underlines the importance of geomycology as an interdisciplinary subject area within microbiology and mycology.
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Affiliation(s)
- Geoffrey Michael Gadd
- Division of Molecular Microbiology, College of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland, UK
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