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Dinius A, Kozanecka ZJ, Hoffmann KP, Krull R. Intensification of bioprocesses with filamentous microorganisms. PHYSICAL SCIENCES REVIEWS 2023. [DOI: 10.1515/psr-2022-0112] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/25/2023]
Abstract
Abstract
Many industrial biotechnological processes use filamentous microorganisms to produce platform chemicals, proteins, enzymes and natural products. Product formation is directly linked to their cellular morphology ranging from dispersed mycelia over loose clumps to compact pellets. Therefore, the adjustment and control of the filamentous cellular morphology pose major challenges for bioprocess engineering. Depending on the filamentous strain and desired product, optimal morphological shapes for achieving high product concentrations vary. However, there are currently no overarching strain- or product-related correlations to improve process understanding of filamentous production systems. The present book chapter summarizes the extensive work conducted in recent years in the field of improving product formation and thus intensifying biotechnological processes with filamentous microorganisms. The goal is to provide prospective scientists with an extensive overview of this scientifically diverse, highly interesting field of study. In the course of this, multiple examples and ideas shall facilitate the combination of their acquired expertise with promising areas of future research. Therefore, this overview describes the interdependence between filamentous cellular morphology and product formation. Moreover, the currently most frequently used experimental techniques for morphological structure elucidation will be discussed in detail. Developed strategies of morphology engineering to increase product formation by tailoring and controlling cellular morphology and thus to intensify processes with filamentous microorganisms will be comprehensively presented and discussed.
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Affiliation(s)
- Anna Dinius
- Institute of Biochemical Engineering , Technische Universität Braunschweig , Rebenring 56 , 38106 Braunschweig , Germany
- Center of Pharmaceutical Engineering , Technische Universität Braunschweig , Franz-Liszt-Str. 35a , 38106 Braunschweig , Germany
| | - Zuzanna J. Kozanecka
- Institute of Biochemical Engineering , Technische Universität Braunschweig , Rebenring 56 , 38106 Braunschweig , Germany
- Center of Pharmaceutical Engineering , Technische Universität Braunschweig , Franz-Liszt-Str. 35a , 38106 Braunschweig , Germany
| | - Kevin P. Hoffmann
- Institute of Biochemical Engineering , Technische Universität Braunschweig , Rebenring 56 , 38106 Braunschweig , Germany
- Center of Pharmaceutical Engineering , Technische Universität Braunschweig , Franz-Liszt-Str. 35a , 38106 Braunschweig , Germany
| | - Rainer Krull
- Institute of Biochemical Engineering , Technische Universität Braunschweig , Rebenring 56 , 38106 Braunschweig , Germany
- Center of Pharmaceutical Engineering , Technische Universität Braunschweig , Franz-Liszt-Str. 35a , 38106 Braunschweig , Germany
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Benavides V, Pinto-Ibieta F, Serrano A, Rubilar O, Ciudad G. Use of Anthracophyllum Discolor and Stereum Hirsutum as a Suitable Strategy for Delignification and Phenolic Removal of Olive Mill Solid Waste. Foods 2022; 11:foods11111587. [PMID: 35681337 PMCID: PMC9180551 DOI: 10.3390/foods11111587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2022] [Revised: 05/19/2022] [Accepted: 05/25/2022] [Indexed: 02/04/2023] Open
Abstract
This study evaluated the use of the white-rot fungi (WRF) Anthracophyllum discolor and Stereum hirsutum as a biological pretreatment for olive mill solid mill waste (OMSW). The WRF strains proposed were added directly to OMSW. The assays consisted of determining the need to add supplementary nutrients, an exogenous carbon source or use agitation systems, and evaluating WRF growth, enzyme activity, phenolic compound removal and lignin degradation. The highest ligninolytic enzyme activity was found at day 10, reaching 176.7 U/L of manganese-independent peroxidase (MniP) produced by A. discolor, and the highest phenolic removal (more than 80% with both strains) was reached after 24 days of incubation. The confocal laser scanning microscopy analysis (CLSM) confirmed lignin degradation through the drop in lignin relative fluorescence units (RFU) from 3967 for untreated OMSW to 235 and 221 RFU, showing a lignin relative degradation of 94.1% and 94.4% after 24 days of treatment by A. discolor and S. hirsutum, respectively. The results demonstrate for the first time that A. discolor and S. hirsutum were able to degrade lignin and remove phenolic compounds from OMSW using this as the sole substrate without adding other nutrients or using agitation systems. This work indicates that it could be possible to design an in situ pretreatment of the valorization of OMSW, avoiding complex systems or transportation. In this sense, future research under non-sterile conditions is needed to evaluate the competition of WRF with other microorganisms present in the OMSW. The main drawbacks of this work are associated with both the low reaction time and the water addition. However, OMSW is seasonal waste produced in one season per year, being stored for a long time. In terms of water addition, the necessary optimization will be addressed in future research.
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Affiliation(s)
- Viviana Benavides
- Programa de Doctorado en Ciencias de Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Casilla 54-D, Temuco 4780000, Chile;
| | - Fernanda Pinto-Ibieta
- Departamento de Ingeniería Química, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile; (F.P.-I.); (O.R.)
- Departamento de Procesos Industriales, Facultad de Ingeniería, Universidad Católica de Temuco, Casilla 15-D, Temuco 4780000, Chile
| | - Antonio Serrano
- Departamento de Microbiología, Facultad de Farmacia, Campus Universitario de Cartuja s/n, Universidad de Granada, 18011 Granada, Spain;
- Instituto de Investigación del Agua, Universidad de Granada, 18071 Granada, Spain
| | - Olga Rubilar
- Departamento de Ingeniería Química, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile; (F.P.-I.); (O.R.)
- Scientific and Technological Bioresources Nucleus (BIOREN), Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile
| | - Gustavo Ciudad
- Departamento de Ingeniería Química, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile; (F.P.-I.); (O.R.)
- Scientific and Technological Bioresources Nucleus (BIOREN), Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile
- Instituto del Medio Ambiente (IMA), Universidad de La Frontera, Avenida Francisco Salazar #01145, Casilla 54-D, Temuco 4780000, Chile
- Correspondence: ; Tel.: +56-45-2325556
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Birch D, Diedrichsen RG, Christophersen PC, Mu H, Nielsen HM. Evaluation of drug permeation under fed state conditions using mucus-covered Caco-2 cell epithelium. Eur J Pharm Sci 2018. [DOI: 10.1016/j.ejps.2018.02.032] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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Saiu G, Tronci S, Grosso M, Cadoni E, Curreli N. Pyrene and Chrysene Tolerance and Biodegradation Capability of Pleurotus Sajor-Caju. ACTA ACUST UNITED AC 2018. [DOI: 10.2174/1874123101812010024] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Introduction:
The present work focused on the biodegradation capability of a white-rot fungus, the Pleurotus sajor-caju, when exposed to polycyclic aromatic hydrocarbons.
Methods:
The research was carried out by using in vitro systems developed on Petri dishes, to evaluate the fungal tolerance to pyrene and chrysene, followed by experiments in liquid medium. The first experimental campaign was necessary to evaluate the conditions promoting fungal growth and tolerance (presence of surfactants, peptone, copper sulphate and lecithin) and it was designed and analysed using statistical techniques.
Results:
It was found that the fungal population growth is strongly inhibited by chrysene presence. On the other hand, pyrene had a mild negative impact on the mycelia growth, which seemed to be positively influenced by the presence of Tween 80 and copper sulphate. Starting from these results, the behaviour of Pleurotus sajor-caju in presence of pyrene was investigated in liquid medium. Results showed that the depletion of pyrene was evident during a period of 20 days, and removal efficiency was greater than 90%.
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Suzuki H, Hamao S, Seto Y, Sato H, Wong J, Prud’homme RK, Chan HK, Onoue S. New nano-matrix oral formulation of nanoprecipitated cyclosporine A prepared with multi-inlet vortex mixer. Int J Pharm 2017; 516:116-119. [DOI: 10.1016/j.ijpharm.2016.11.031] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Revised: 10/27/2016] [Accepted: 11/10/2016] [Indexed: 11/16/2022]
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Immobilization of the white-rot fungus Anthracophyllum discolor to degrade the herbicide atrazine. AMB Express 2016; 6:104. [PMID: 27815917 PMCID: PMC5097060 DOI: 10.1186/s13568-016-0275-z] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Accepted: 10/27/2016] [Indexed: 11/10/2022] Open
Abstract
Herbicides cause environmental concerns because they are toxic and accumulate in the environment, food products and water supplies. There is a need to develop safe, efficient and economical methods to remove them from the environment, often by biodegradation. Atrazine is such herbicide. White-rot fungi have the ability to degrade herbicides of potential utility. This study formulated a novel pelletized support to immobilize the white-rot fungus Anthracophyllum discolor to improve its capability to degrade the atrazine using a biopurification system (BS). Different proportions of sawdust, starch, corn meal and flaxseed were used to generate three pelletized supports (F1, F2 and F3). In addition, immobilization with coated and uncoated pelletized supports (CPS and UPS, respectively) was assessed. UPS-F1 was determined as the most effective system as it provided high level of manganese peroxidase activity and fungal viability. The half-life (t1/2) of atrazine decreased from 14 to 6 days for the control and inoculated samples respectively. Inoculation with immobilized A. discolor produced an increase in the fungal taxa assessed by DGGE and on phenoloxidase activity determined. The treatment improves atrazine degradation and reduces migration to surface and groundwater.
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Bustamante M, Rubilar O, Diez MC. Effect of Soya Lecithin on Solubilization and Biodegradation of Pentachlorophenol by <i>Anthracophyllum discolor</i>. ACTA ACUST UNITED AC 2014. [DOI: 10.4236/ajac.2014.51005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Yang SS, Liu ZW, Yi XP, Zhang AL, Zhang TY, Luo JX, Zhang ZH, Shen JC, Yin HX, Chen LP. Isolation of laccase gene from Bacillus subtilis and analysis of its physicochemical properties. Gene 2011; 491:49-52. [PMID: 21983598 DOI: 10.1016/j.gene.2011.09.006] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2011] [Revised: 09/04/2011] [Accepted: 09/09/2011] [Indexed: 11/26/2022]
Abstract
The present study reports the cloning and sequencing of lac2 from Bacillus subtilis. The gene is composed of 1542 bp and encodes a 514-amino acid protein. The gene has 86% homology with a published laccase with GeneID 936023. The lac2 gene was deposited in GenBank as a new nucleotide sequence. This new sequence was cloned into the multiple cloning site of pPIC9K to generate pPIC9K-lac2, which was then transformed into Pichia pastoris GS115 via electroporation. The recombinant GS115 (pPIC9K-lac2) was grown initially in BMGY medium and transferred to BMMY to induce gene expression for 48 h. The recombinant Lac2 protein shows laccase activity with α-naphthol and guaiacol as substrates. The optimal pH is between 3.2 and 4.7, and the optimal temperature is 25°C for enzyme reaction.
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Affiliation(s)
- Sui-Shan Yang
- Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, Hainan, China
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